🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jacob Verburgt

University of Indianapolis

ORCID: 0000-0002-8524-1342

Also affiliated with Indiana University – Purdue University Fort Wayne, Purdue University West Lafayette, Computing Center

Biochemistry, Genetics and Molecular BiologyMaterials ScienceComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
6.5Author DataRank

Indexed papers

5in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Papers

Driven by 18 papers — median percentile 77. Top paper: “Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment”.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26609
Top 11%
1.9DataRank
Top 11%81 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7
Top 23%
0.871DataRank
Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study

PROTEOMICS(2023)10.1002/pmic.202200323
Top 25%
0.815DataRank
Top 25%26 citations

Qifang Xu, Gerardo Tauriello, Lorenzo Pantolini, Torsten Schwede, Frédéric Cazals +41 more

Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment

Utrecht University Repository (Utrecht University)(2023)10.22541/au.168888815.53957253/v1
Top 36%
0.540DataRank
Top 36%17 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Research Square(2024)10.21203/rs.3.rs-3864137/v1
N/A
0DataRank · unranked
2 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent Chen +76 more

AlphaFold Model Quality Self-Assessment Improvement Via Deep Graph Learning

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.18.604136
N/A
0DataRank · unranked
2 citations

Zicong Zhang, Daisuke Kihara, Jacob Verburgt

Structure Modeling Protocols for Protein Multimer and RNA in CASP16 With Enhanced MSAs , Model Ranking, and Deep Learning

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70033
N/A
0DataRank · unranked
6 citations

Tsukasa Nakamura, Jacob Verburgt, Anika Jain, Genki Terashi, Pranav Punuru +6 more

AlphaFold model quality self‐assessment improvement via deep graph learning

Protein Science(2025)10.1002/pro.70274
N/A
0DataRank · unranked
3 citations

Zicong Zhang, Daisuke Kihara, Jacob Verburgt

Integrative Protein Assembly With LZerD and Deep Learning in CAPRI 47–55

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.26818
N/A
0DataRank · unranked
3 citations

Yuki Kagaya, Jacob Verburgt, Genki Terashi, Woong‐Hee Shin, Anika Jain +8 more

Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70079
N/A
0DataRank · unranked
1 citations

Elisa Posani, Eugene F. Baulin, Janusz M. Bujnicki, Giovanni Bussi, Thomas E. Cheatham +46 more

Learning with Privileged Knowledge Distillation for Improved Peptide–Protein Docking

ACS Omega(2025)10.1021/acsomega.5c00967
N/A
0DataRank · unranked
2 citations

Jacob Verburgt, Yuki Kagaya, Charles Christoffer, Daisuke Kihara, Zicong Zhang

Structure Modeling Protocols for Protein Multimer and RNA in CASP16 with Enhanced MSAs, Model Ranking, and Deep Learning

(2025)10.22541/au.174478900.09405488/v1
N/A
0DataRank · unranked
0 citations

Tsukasa Nakamura, Jacob Verburgt, Anika Jain J, Genki Terashi, Pranav Punuru +6 more

Blind prediction of complex water and ion ensembles around RNA in CASP16

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.03.685595
N/A
0DataRank · unranked
0 citations

Elisa Posani, Eugene F. Baulin, Janusz M. Bujnicki, Giovanni Bussi, Thomas E. Cheatham +46 more

Mass spectrometry‐based proteomic platforms for better understanding of SARS‐CoV‐2 induced pathogenesis and potential diagnostic approaches

PROTEOMICS(2021)10.1002/pmic.202000279
N/A
0DataRank · unranked
36 citations

R. Shyama Prasad Rao, Rashaun S. Wilson, Ujwal Punyamurtula, Fernanda Salvato, Max Petersen +9 more

Evolutionary dynamics of indels in SARS-CoV-2 spike glycoprotein

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.30.454557
N/A
0DataRank · unranked
2 citations

Nagib Ahsan, Chunhui Xu, Lingtao Su, Jacob Verburgt, Luca Fornelli +3 more

Recent Deep Learning Applications to Structure-Based Drug Design

Methods in molecular biology(2023)10.1007/978-1-0716-3441-7_13
N/A
0DataRank · unranked
4 citations

Anika Jain, Daisuke Kihara, Jacob Verburgt

Improved Peptide Docking with Privileged Knowledge Distillation using Deep Learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.01.569671
N/A
0DataRank · unranked
4 citations

Jacob Verburgt, Yuki Kagaya, Charles Christoffer, Daisuke Kihara, Zicong Zhang