Fengzhu Sun

Also affiliated with Biologie Computationnelle, Quantitative et Synthétique

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 31 papers. Top paper: “Effective binning of metagenomic contigs using contrastive multi-view representation learning”.

Effective binning of metagenomic contigs using contrastive multi-view representation learning

Nature Communications(2024)10.1038/s41467-023-44290-z

N/A

1.7DataRank · unranked

79 citations

Ronghui You, Haitao Han, Wei Liu, Fengzhu Sun, Shanfeng Zhu +1 more

Identifying viruses from metagenomic data using deep learning

Quantitative Biology(2020)10.1007/s40484-019-0187-4

N/A

0.973DataRank · unranked

656 citations

Kai Song, Chao Deng, Nathan A. Ahlgren, Jed A. Fuhrman, Yi Li +4 more

A network-based integrated framework for predicting virus–prokaryote interactions

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa044

N/A

0DataRank · unranked

147 citations

Jie Ren, Kujin Tang, Emily Dart, J. Cesar Ignacio‐Espinoza, Jed A. Fuhrman +4 more

Rapid diagnosis and comprehensive bacteria profiling of sepsis based on cell-free DNA

Journal of Translational Medicine(2020)10.1186/s12967-019-02186-x

N/A

0DataRank · unranked

17 citations

Shuo Li, Wenyuan Li, Jie Ren, Fengzhu Sun, Rui Liu +2 more

KIMI: Knockoff Inference for Motif Identification from molecular sequences with controlled false discovery rate

Bioinformatics(2020)10.1093/bioinformatics/btaa912

N/A

0DataRank · unranked

5 citations

Jie Ren, Yingying Fan, Fengzhu Sun, Xin Bai

CRAFT: Compact genome Representation toward large-scale Alignment-Free daTabase

Bioinformatics(2020)10.1093/bioinformatics/btaa699

N/A

0DataRank · unranked

5 citations

Jiaxing Bai, Yiwen Wang, Ying Wang, Fengzhu Sun, Yang Young Lu

Confidence intervals for Markov chain transition probabilities based on next generation sequencing reads data

Quantitative Biology(2020)10.1007/s40484-020-0200-y

N/A

0DataRank · unranked

4 citations

Xin Kang, Jie Ren, Fengzhu Sun, Lin Wan

Improving brain age estimates with deep learning leads to identification of novel genetic factors associated with brain aging

Neurobiology of Aging(2021)10.1016/j.neurobiolaging.2021.03.014

N/A

0DataRank · unranked

37 citations

Ben A. Duffy, Meredith Franklin, William Matloff, Lu Zhao, Nibal Arzouni +3 more

Decreased secondary faecal bile acids in children with ulcerative colitis and Clostridioides difficile infection

Alimentary Pharmacology & Therapeutics(2021)10.1111/apt.16496

N/A

0DataRank · unranked

16 citations

Beibei Wang, Christopher P. Gayer, Riddhi Parsana, Yihui Luan, Fengzhu Sun +2 more

DeepMicroClass sorts metagenomes into prokaryotes, eukaryotes and viruses, with marine applications

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.26.466018

N/A

0DataRank · unranked

9 citations

Tianqi Tang, Siliangyu Cheng, Ting Chen, Jed A. Fuhrman, Fengzhu Sun +1 more

HiCBin: Binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.22.436521

N/A

0DataRank · unranked

6 citations

Fengzhu Sun, Yuxuan Du

DeepMicrobeFinder Sorts Metagenomes into Prokaryotes, Eukaryotes and Viruses, with Marine Applications

Research Square(2021)10.21203/rs.3.rs-1016976/v1

N/A

0DataRank · unranked

3 citations

Siliangyu Cheng, Ting Chen, Jed A. Fuhrman, Fengzhu Sun, Shengwei Hou

16S rRNA and metagenomic shotgun sequencing data revealed consistent patterns of gut microbiome signature in pediatric ulcerative colitis

Scientific Reports(2022)10.1038/s41598-022-07995-7

N/A

0DataRank · unranked

86 citations

Beibei Wang, Xin Bai, Yihui Luan, Yingying Fan, Sonia Michail +2 more

HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps

Genome biology(2022)10.1186/s13059-022-02626-w

N/A

0DataRank · unranked

52 citations

Fengzhu Sun, Yuxuan Du

Metagenomic Analyses of Multiple Gut Datasets Revealed the Association of Phage Signatures in Colorectal Cancer

Frontiers in Cellular and Infection Microbiology(2022)10.3389/fcimb.2022.918010

N/A

0DataRank · unranked

39 citations

Sonia Michail, Fengzhu Sun, Wenxuan Zuo

Phage–bacterial contig association prediction with a convolutional neural network

Bioinformatics(2022)10.1093/bioinformatics/btac239

N/A

0DataRank · unranked

11 citations

Shengwei Hou, Jed A. Fuhrman, Fengzhu Sun, Tianqi Tang

HiFine: integrating Hi-C-based and shotgun-based methods to refine binning of metagenomic contigs

Bioinformatics(2022)10.1093/bioinformatics/btac295

N/A

0DataRank · unranked

6 citations

Fengzhu Sun, Yuxuan Du

The Machine-Learning-Mediated Interface of Microbiome and Genetic Risk Stratification in Neuroblastoma Reveals Molecular Pathways Related to Patient Survival

Cancers(2022)10.3390/cancers14122874

N/A

0DataRank · unranked

16 citations

Xiaoqi Wang, Ruihao Huang, Andres Stucky, Xuelian Chen, Lan Sun +11 more

MLR-OOD: A Markov Chain Based Likelihood Ratio Method for Out-Of-Distribution Detection of Genomic Sequences

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167586

N/A

0DataRank · unranked

5 citations

Jie Ren, Fengzhu Sun, Xin Bai

Sparse logistic regression revealed the associations between HBV PreS quasispecies and hepatocellular carcinoma

Virology Journal(2022)10.1186/s12985-022-01836-9

N/A

0DataRank · unranked

4 citations

Shuqin Zhang, Xin Bai, Meng Fang, Shipeng Chen, Xiaotao Liang +7 more

A model-based approach to assess reproducibility for large-scale high-throughput MRI-based studies

NeuroImage(2022)10.1016/j.neuroimage.2022.119166

N/A

0DataRank · unranked

6 citations

Yinglei Lai, Jujiao Kang, Weikang Gong, Liang Ma, Tianye Jia +9 more

Batch Normalization Followed by Merging Is Powerful for Phenotype Prediction Integrating Multiple Heterogeneous Studies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.28.509843

N/A

0DataRank · unranked

0 citations

Fengzhu Sun, Yilin Gao

ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data

Nature Communications(2023)10.1038/s41467-023-35945-y

N/A

0DataRank · unranked

38 citations

Jed A. Fuhrman, Fengzhu Sun, Yuxuan Du

MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data

Nature Communications(2023)10.1038/s41467-023-41209-6

N/A

0DataRank · unranked

23 citations

Fengzhu Sun, Yuxuan Du

Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies

PLoS Computational Biology(2023)10.1371/journal.pcbi.1010608

N/A

0DataRank · unranked

7 citations

Fengzhu Sun, Yilin Gao

Gut metabolomic profiles in paediatric ulcerative colitis patients prior to and after receiving faecal microbiota transplants

Gut Microbiome(2023)10.1017/gmb.2023.15

N/A

0DataRank · unranked

3 citations

Beibei Wang, Yihui Luan, Fengzhu Sun, Sonia Michail, Parastou S. Khalessi Hosseini

DeepDecon accurately estimates cancer cell fractions in bulk RNA-seq data

Patterns(2024)10.1016/j.patter.2024.100969

N/A

0DataRank · unranked

4 citations

Yuxuan Du, Andres Stucky, Kevin R. Kelly, Jiang F. Zhong, Fengzhu Sun +1 more

Fecal bile acid profiles before and after fecal microbial transplant in pediatric onset ulcerative colitis

Gut Microbes Reports(2024)10.1080/29933935.2024.2393219

N/A

0DataRank · unranked

1 citations

Patil Kavarian, Beibei Wang, Riddhi Parsana, Ramón Durazo-Arvizú, Fengzhu Sun +2 more

Analysis of metagenomic data

Nature Reviews Methods Primers(2025)10.1038/s43586-024-00376-6

N/A

0DataRank · unranked

62 citations

Judith Rodríguez, Viorel Munteanu, Cynthia Ronkowski, Nitesh Kumar Sharma, Mohammed Alser +35 more

Exploring treatment-driven subclonal evolution of prognostic triple biomarkers: Dual gene fusions and chimeric RNA variants in novel subtypes of acute myeloid leukemia patients with KMT2A rearrangement

Drug Resistance Updates(2025)10.1016/j.drup.2024.101199

N/A

0DataRank · unranked

3 citations

Shengwen Calvin Li, Jeffrey Xiao, Qian Liu, Durga Cherukuri, Yan Liu +20 more

Association of relative brain age with tobacco smoking, alcohol consumption, and genetic variants

Scientific Reports(2020)10.1038/s41598-019-56089-4

N/A

0DataRank · unranked

163 citations

Lu Zhao, William Matloff, Fengzhu Sun, Arthur W. Toga, Kaida Ning