Julio Saez-Rodriguez

Also affiliated with Heidelberg University, University Hospital Heidelberg, Heidelberg University of Education, Heidelberg Engineering (Germany), Bioinformatics Institute, Heidelberg University

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

10.6Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nature Communications(2019)10.1038/s41467-019-09799-2

Top 4%

5.0DataRank

Top 4%368 citations

Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan +426 more

Papers

Driven by 48 papers — median percentile 63. Top paper: “The Global Phosphorylation Landscape of SARS-CoV-2 Infection”.

The Global Phosphorylation Landscape of SARS-CoV-2 Infection

Cell(2020)10.1016/j.cell.2020.06.034

N/A

10.3DataRank · unranked

1152 citations

Danish Memon, Bjoern Meyer, Kris M. White, Veronica V. Rezelj, Miguel Correa Marrero +73 more

Metrics reloaded: recommendations for image analysis validation

Nature Methods(2024)10.1038/s41592-023-02151-z

N/A

9.2DataRank · unranked

411 citations

Annika Reinke, Patrick Godau, Minu D. Tizabi, Florian Buettner, Evangelia Christodoulou +68 more

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

Genome biology(2020)10.1186/s13059-020-1949-z

N/A

7.7DataRank · unranked

360 citations

Jovan Tanevski, Javier Perales-Patón, Jan Gleixner, Manu P. Kumar, Elisabetta Mereu +7 more

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nature Communications(2019)10.1038/s41467-019-09799-2

Top 4%

5.0DataRank

Top 4%368 citations

Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan +426 more

Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis

Molecular Systems Biology(2021)10.15252/msb.20209923

Top 5%

4.4DataRank

Top 5%380 citations

Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio‐Escat, Michal Klein, Olga Ivanova +7 more

The orchestra of lipid-transfer proteins at the crossroads between metabolism and signaling

Progress in Lipid Research(2016)10.1016/j.plipres.2015.10.004

N/A

4.0DataRank · unranked

122 citations

Kenji Maeda, Denes Turei, Julio Saez-Rodriguez, Anne-Claude Gavin, Antonella Chiapparino

Adult human kidney organoids originate from CD24+ cells and represent an advanced model for adult polycystic kidney disease

Nature Genetics(2022)10.1038/s41588-022-01202-z

N/A

1.5DataRank · unranked

64 citations

Christoph Kuppe, Javier Perales-Patón, Sikander Hayat, Jennifer Kranz, Ali T. Abdallah +34 more

Towards multimodal foundation models in molecular cell biology

Nature(2025)10.1038/s41586-025-08710-y

N/A

1.2DataRank · unranked

88 citations

Alejandro Tejada-Lapuerta, Maria Brbić, Julio Saez-Rodriguez, Simona Cristea, Hani Goodarzi +4 more

Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics

Cell Systems(2020)10.1016/j.cels.2020.06.013

N/A

1.1DataRank · unranked

32 citations

Francesca Petralia, Zhi Li, Hongyang Li, Weiping Ma, Xiaoyu Song +87 more

Best practices for single-cell analysis across modalities

Nature Reviews Genetics(2023)10.1038/s41576-023-00586-w

N/A

1.0DataRank · unranked

1013 citations

Anna Christina Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia +34 more

Defining and benchmarking open problems in single-cell analysis

Nature Biotechnology(2025)10.1038/s41587-025-02694-w

N/A

0.937DataRank · unranked

29 citations

Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt, Nikolay S. Markov, Luke Zappia +48 more

Community assessment of methods to deconvolve cellular composition from bulk gene expression

Nature Communications(2024)10.1038/s41467-024-50618-0

N/A

0.867DataRank · unranked

34 citations

Aurélien de Reyniès, Aaron M. Newman, Joshua J. Waterfall, Andrew Lamb, Florent Petitprez +63 more

Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling

BMC Systems Biology(2009)10.1186/1752-0509-3-98

N/A

0.831DataRank · unranked

254 citations

Jan Krumsiek, Julio Saez-Rodriguez, Douglas A. Lauffenburger, Steffen Klamt, Fabian Joachim Theis +1 more

A Community Challenge for Pancancer Drug Mechanism of Action Inference from Perturbational Profile Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.21.423514

Top 32%

0.625DataRank

Top 32%20 citations

Robert J. Allaway, Bence Szalai, Wenyu Wang, Tingzhong Tian, Adrià Fernández‐Torras +23 more

Defining and benchmarking open problems in single-cell analysis

Research Square(2024)10.21203/rs.3.rs-4181617/v1

N/A

0.603DataRank · unranked

17 citations

Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay S. Markov +45 more

Single‐cell biology: what does the future hold?

Molecular Systems Biology(2023)10.15252/msb.202311799

N/A

0.464DataRank · unranked

21 citations

Jingyi Hou, M. Madan Babu, Prisca Liberali, Ido Amit, Bart Deplancke +7 more

OmniPath: integrated knowledgebase for multi-omics analysis

Nucleic Acids Research(2025)10.1093/nar/gkaf1126

Top 43%

0.433DataRank

Top 43%15 citations

Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár, Yunfan Bai, Francesco Ceccarelli +27 more

A Human Glomerular Disease Atlas defines the APOL1-JAK-STAT feed forward loop in focal segmental glomerulosclerosis

medRxiv(2025)10.1101/2025.09.12.25335572

Top 65%

0.208DataRank

Top 65%3 citations

Charlotte Boys, Somenath Datta, Viji Nair, Edgar A. Otto, Damian Fermin +24 more

Cross-regional homeostatic and reactive glial signatures in multiple sclerosis

Acta Neuropathologica(2022)10.1007/s00401-022-02497-2

N/A

0DataRank · unranked

42 citations

Amel Zulji, Nikolas A Stevens, Sophia Schwarz, Sven Wischnewski, Mikail Öztürk +6 more

Metrics reloaded: Recommendations for image analysis validation

arXiv (Cornell University)(2022)10.48550/arxiv.2206.01653

N/A

0DataRank · unranked

62 citations

Annika Reinke, Patrick Godau, Minu D. Tizabi, Florian Buettner, Evangelia Christodoulou +69 more

Community assessment of methods to deconvolve cellular composition from bulk gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.03.494221

N/A

0DataRank · unranked

11 citations

Aurélien de Reyniès, Aaron M. Newman, Joshua J. Waterfall, Andrew Lamb, Florent Petitprez +35 more

Spatial cell type mapping of multiple sclerosis lesions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.03.514906

N/A

0DataRank · unranked

16 citations

Pau Badia-i-Mompel, Ricardo O. Ramirez Flores, Patricia Sekol, Annika Hofmann, Thomas Thäwel +11 more

Deep Phosphoproteomic Elucidation of Metformin-Signaling in Heterogenous Colorectal Cancer Cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.07.499038

N/A

0DataRank · unranked

0 citations

Erli Gao, Sophia Müller-Dott, Wenxue Li, Aurelien Dugourd, George Rosenberger +3 more

Metabolic Communication by SGLT2 Inhibition

Circulation(2023)10.1161/circulationaha.123.065517

N/A

0DataRank · unranked

136 citations

Young Chul Kim, Søren Gullaksen, Benedikt Schrage, Janice Raabe, Arvid Hutzfeldt +30 more

International Society of Nephrology first consensus guidance for preclinical animal studies in translational nephrology

Kidney International(2023)10.1016/j.kint.2023.03.007

N/A

0DataRank · unranked

37 citations

A. Richard Kitching, Peter Boor, Alessia Fornoni, Jürgen Floege, P. Toby Coates +63 more

Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities

Clinical and Translational Medicine(2023)10.1002/ctm2.1179

N/A

0DataRank · unranked

28 citations

Erli Gao, Sophia Müller-Dott, Wenxue Li, Carlos Chacon Cordon, Shisheng Wang +5 more

Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100602

N/A

0DataRank · unranked

20 citations

Weigang Ge, Yi Zhu, Azin Sayad, Augustin Luna, Mengge Lyu +17 more

A platform for the biomedical application of large language models

Nature Biotechnology(2025)10.1038/s41587-024-02534-3

N/A

0DataRank · unranked

53 citations

Shaohong Feng, Noah Bruderer, Andreas Maier, A. Dı́az, Amy Strange +38 more

Preventing chronic kidney disease and maintaining kidney health: conclusions from a Kidney Disease: Improving Global Outcomes (KDIGO) Controversies Conference

Kidney International(2025)10.1016/j.kint.2025.04.005

N/A

0DataRank · unranked

43 citations

José Manuel Arreola Guerra, Juliana C.N. Chan, Vivekanand Jha, Holly Kramer, Susanne B. Nicholas +62 more

Comprehensive evaluation of phosphoproteomic-based kinase activity inference

Nature Communications(2025)10.1038/s41467-025-59779-y

N/A

0DataRank · unranked

16 citations

Eric J. Jaehnig, Khoi Pham Munchic, Wen Jiang, Tomer M. Yaron, Sara R. Savage +12 more

Understanding metric-related pitfalls in image analysis validation

Nature Methods(2024)10.1038/s41592-023-02150-0

N/A

0DataRank · unranked

181 citations

Minu D. Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Ali Emre Kavur +65 more

OmniPath: integrated knowledgebase for multi-omics analysis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.11.675512

Top 100%

0DataRank

Top 100%0 citations

Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár, Yunfan Bai, Francesco Ceccarelli +27 more

BIAS: Transparent reporting of biomedical image analysis challenges

Medical Image Analysis(2020)10.1016/j.media.2020.101796

N/A

0DataRank · unranked

9 citations

Annika Reinke, Michal Kozubek, Anne L. Martel, Tal Arbel, Matthias Eisenmann +9 more

Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop

Briefings in Bioinformatics(2020)10.1093/bib/bbaa046

N/A

0DataRank · unranked

38 citations

Martin Kuiper, Marek Ostaszewski, Rahuman S. Malik‐Sheriff, Cristina Casals‐Casas, Denis Thieffry +14 more

Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data

Life Science Alliance(2020)10.26508/lsa.202000867

N/A

0DataRank · unranked

25 citations

Thin Nguyen, Buu Truong, Nikos Karaiskos, Mehmet Eren Ahsen, Xinyu Zhang +33 more

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST)

Bioinformatics(2020)10.1093/bioinformatics/btaa622

N/A

0DataRank · unranked

23 citations

Steven Vercruysse, Márcio Luís Acencio, Ruth C. Lovering, Sandra Orchard, Glyn Bradley +21 more

The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST)

Preprints.org(2020)10.20944/preprints202004.0480.v1

N/A

0DataRank · unranked

8 citations

Steven Vercruysse, Márcio Luís Acencio, Ruth C. Lovering, Sandra Orchard, Glyn Bradley +20 more

Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.08.416719

N/A

0DataRank · unranked

3 citations

Adrien Rougny, Jonathan R Karr, Julio Saez-Rodriguez, Marek Ostaszewski, Reinhard Schneider +1 more

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems

INRIA a CCSD electronic archive server(2020)10.5281/zenodo.4245269

N/A

0DataRank · unranked

0 citations

Tomáš Helikar, Matteo Barberis, Marc R. Birtwistle, Laurence Calzone, Claudine Chaouiya +7 more

Prediction of human population responses to toxic compounds by a collaborative competition

UNC Libraries(2020)10.17615/js8h-hg22

N/A

0DataRank · unranked

0 citations

Julio Saez-Rodriguez, Federica Eduati, Tao Wang

Inferring causal molecular networks: empirical assessment through a community-based effort

UNC Libraries(2020)10.17615/j5nb-5n89

N/A

0DataRank · unranked

0 citations

Steven M. Hill, Daoud Meerzaman, Venkateshan Kannan, Bahman Afsari, Takeshi Hase +95 more

Deciphering the signaling network of breast cancer improves drug sensitivity prediction

Cell Systems(2021)10.1016/j.cels.2021.04.002

N/A

0DataRank · unranked

42 citations

Attila Gábor, Mi Yang, Valentina Cappelletti, Jonas Windhager, Oscar M. Rueda +10 more

Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd

Molecular Systems Biology(2021)10.15252/msb.202110402

N/A

0DataRank · unranked

14 citations

Marco Tognetti, Alice Driessen, Jovan Tanevski, Baosen Guo, Wencai Cao +90 more

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems

Bioinformatics(2021)10.1093/bioinformatics/btab229

N/A

0DataRank · unranked

13 citations

Tomáš Helikar, Matteo Barberis, Marc R. Birtwistle, Laurence Calzone, Claudine Chaouiya +7 more

Reusability and composability in process description maps: RAS–RAF–MEK–ERK signalling

Briefings in Bioinformatics(2021)10.1093/bib/bbab103

N/A

0DataRank · unranked

7 citations

Adrien Rougny, Jonathan R Karr, Julio Saez-Rodriguez, Marek Ostaszewski, Reinhard Schneider +1 more

Cell-to-cell and type-to-type heterogeneity of signaling networks: Insights from the crowd

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.23.436603

N/A

0DataRank · unranked

3 citations

Marco Tognetti, Alice Driessen, Jovan Tanevski, Baosen Guo, Wencai Cao +6 more

A community challenge for a pancancer drug mechanism of action inference from perturbational profile data

Cell Reports Medicine(2022)10.1016/j.xcrm.2021.100492

N/A

0DataRank · unranked

69 citations

Robert J. Allaway, Bence Szalai, Wenyu Wang, Tingzhong Tian, Adrià Fernández‐Torras +23 more

Two heads are better than one: current landscape of integrating QSP and machine learning

Journal of Pharmacokinetics and Pharmacodynamics(2022)10.1007/s10928-022-09805-z

N/A

0DataRank · unranked

63 citations

Ioannis P. Androulakis, Peter L. Bonate, Limei Cheng, Tomáš Helikar, Jaimit Parikh +17 more

Julio Saez-Rodriguez

Indexed papers

Top data-sharing exemplar

Papers