Vedbar S. Khadka

Also affiliated with Cancer Center of Hawaii

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.8Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The landscape of bacterial presence in tumor and adjacent normal tissue across 9 major cancer types using TCGA exome sequencing

Computational and Structural Biotechnology Journal(2020)10.1016/j.csbj.2020.03.003

Top 8%

2.8DataRank

Top 8%58 citations

Brenda Y. Hernandez, Mark Menor, Youping Deng, Vedbar S. Khadka, Rebecca Rodriguez

Papers

Driven by 22 papers — median percentile 92. Top paper: “The landscape of bacterial presence in tumor and adjacent normal tissue across 9 major cancer types using TCGA exome sequencing”.

The landscape of bacterial presence in tumor and adjacent normal tissue across 9 major cancer types using TCGA exome sequencing

Computational and Structural Biotechnology Journal(2020)10.1016/j.csbj.2020.03.003

Top 8%

2.8DataRank

Top 8%58 citations

Brenda Y. Hernandez, Mark Menor, Youping Deng, Vedbar S. Khadka, Rebecca Rodriguez

Disabled Homolog 2 (DAB2) Protein in Tumor Microenvironment Correlates with Aggressive Phenotype in Human Urothelial Carcinoma of the Bladder

Diagnostics(2020)10.3390/diagnostics10010054

N/A

0DataRank · unranked

18 citations

Makito Miyake, Sayuri Ohnishi, Yoshihiro Tatsumi, Daisuke Gotoh, Shunta Hori +14 more

Tissue-associated microbial detection in cancer using human sequencing data

BMC Bioinformatics(2020)10.1186/s12859-020-03831-9

N/A

0DataRank · unranked

13 citations

Vedbar S. Khadka, Mark Menor, Brenda Y. Hernandez, Youping Deng, Rebecca Rodriguez

Ischemic heart injury leads to HIF1-dependent differential splicing of CaMK2γ

Scientific Reports(2021)10.1038/s41598-021-92426-2

N/A

0DataRank · unranked

22 citations

Chad B. Walton, Blake Pinell, Vedbar S. Khadka, Brandyn Dunn, Katie Lee +4 more

The miRNA Profile of Inflammatory Colorectal Tumors Identify TGF-β as a Companion Target for Checkpoint Blockade Immunotherapy

Frontiers in Cell and Developmental Biology(2021)10.3389/fcell.2021.754507

N/A

0DataRank · unranked

7 citations

Zitong Gao, Monique Schukking, Mark Menor, Vedbar S. Khadka, Muller Fabbri +3 more

Adaptive Thermogenesis in a Mouse Model Lacking Selenoprotein Biosynthesis in Brown Adipocytes

International Journal of Molecular Sciences(2021)10.3390/ijms22020611

N/A

0DataRank · unranked

6 citations

Ashley N. Ogawa-Wong, Lígia Moriguchi Watanabe, Vedbar S. Khadka, Mark Menor, Daniel J. Torres +4 more

T-cell activation decreases miRNA-15a/16 levels to promote MEK1–ERK1/2–Elk1 signaling and proliferative capacity

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.101634

N/A

0DataRank · unranked

16 citations

Chi Ma, FuKun W. Hoffmann, Lance G. A. Nunes, Johann Urschitz, Stefan Moisyadi +4 more

Source of Liquid Biopsy Biomarker: Exosome vs Whole Plasma, Fasting vs Non-fasting

Research Square(2022)10.21203/rs.3.rs-2383686/v1

N/A

0DataRank · unranked

0 citations

Vedbar S. Khadka, Mayumi Jijiwa, Ken Kobayashi, Youping Deng, Masaki Nasu

Circulating microRNA Biomarker for Detecting Breast Cancer in High-Risk Benign Breast Tumors

International Journal of Molecular Sciences(2023)10.3390/ijms24087553

N/A

0DataRank · unranked

20 citations

Masaki Nasu, Youping Deng, Mayumi Jijiwa, Vedbar S. Khadka

Exploring Optimal Biomarker Sources: A Comparative Analysis of Exosomes and Whole Plasma in Fasting and Non-Fasting Conditions for Liquid Biopsy Applications

International Journal of Molecular Sciences(2023)10.3390/ijms25010371

N/A

0DataRank · unranked

8 citations

Vedbar S. Khadka, Mayumi Jijiwa, Ken Kobayashi, Youping Deng, Masaki Nasu

sRNAfrag: a pipeline and suite of tools to analyze fragmentation in small RNA sequencing data

Briefings in Bioinformatics(2023)10.1093/bib/bbad515

N/A

0DataRank · unranked

3 citations

Mayumi Jijiwa, Vedbar S. Khadka, Masaki Nasu, Youping Deng, K. Nakatsu

Single-cell RNA sequencing reveals characteristics of myeloid cells in pulmonary post-acute sequelae of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.31.551349

N/A

0DataRank · unranked

2 citations

Logan S. Dean, Boonyanudh Jiyarom, Vedbar S. Khadka, Youping Deng, Vivek R. Nerurukar +6 more

sRNAfrag: A pipeline and suite of tools to analyze fragmentation in small RNA sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.19.553943

N/A

0DataRank · unranked

0 citations

Mayumi Jijiwa, Vedbar S. Khadka, Masaki Nasu, Matthew Huo, Youping Deng +1 more

Effects of Heat-Induced Oxidative Stress and Astaxanthin on the NF-kB, NFE2L2 and PPARα Transcription Factors and Cytoprotective Capacity in the Thymus of Broilers

Current Issues in Molecular Biology(2024)10.3390/cimb46080544

N/A

0DataRank · unranked

17 citations

Yuanyuan Fu, Masaki Nasu, Hua Yang, Vedbar S. Khadka, Youping Deng +1 more

Single‐cell RNA sequencing reveals characteristics of myeloid cells in post-acute sequelae of SARS-CoV-2 patients with persistent respiratory symptoms

Frontiers in Immunology(2024)10.3389/fimmu.2023.1268510

N/A

0DataRank · unranked

12 citations

Logan S. Dean, Boonyanudh Jiyarom, Vedbar S. Khadka, Youping Deng, Vivek R. Nerurkar +6 more

Use of Microalgae-Derived Astaxanthin to Improve Cytoprotective Capacity in the Ileum of Heat-Induced Oxidative Stressed Broilers

Animals(2024)10.3390/ani14131932

N/A

0DataRank · unranked

9 citations

Yuanyuan Fu, Masaki Nasu, Hua Yang, Vedbar S. Khadka, Youping Deng +1 more

Transcriptome-based identification of long noncoding RNAs (lncRNAs) across the genome of Anopheles gambiae

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.02.616138

N/A

0DataRank · unranked

1 citations

Kai Hu, Michelle M. Riehle, Vedbar S. Khadka, Jiannong Xu

Loss of PKM2 dysregulates inflammatory signaling in the infarcted murine heart

Physiological Reports(2025)10.14814/phy2.70193

N/A

0DataRank · unranked

7 citations

Allison L Williams, Akitoshi Hara, Vedbar S. Khadka, Jeffrey Hayashi, Ralph V. Shohet +1 more

Peripheral immune progression to long COVID is associated with mitochondrial gene transcription: A meta-analysis

Mitochondrion(2025)10.1016/j.mito.2025.102072

N/A

0DataRank · unranked

3 citations

Vedbar S. Khadka, Isam Mohd‐Ibrahim, Michael J. Peluso, Timothy J. Henrich, Youping Deng +2 more

Pre-Conception Maternal Obesity Confers Autism Spectrum Disorder-like Behaviors in Mice Offspring Through Neuroepigenetic Dysregulation

Cells(2025)10.3390/cells14151201

N/A

0DataRank · unranked

3 citations

Amada Torres, Michael J. Corley, Brennan Y. Yamamoto, Chantell Balaan, Yasuhiro Yamauchi +7 more

Zinc-limited Mycobacterium tuberculosis stimulate distinct responses in macrophages compared with standard zinc-replete bacteria

Infection and Immunity(2025)10.1128/iai.00578-24

N/A

0DataRank · unranked

0 citations

Allexa D. Burger, Kelly H. Chang, FuKun W. Hoffmann, Yuanyuan Fu, Vedbar S. Khadka +5 more

Identification of long noncoding RNAs (lncRNAs) and co-transcriptional analysis of mRNAs and lncRNAs in transcriptomes of Anopheles gambiae

Frontiers in RNA Research(2025)10.3389/frnar.2025.1555885

N/A

0DataRank · unranked

0 citations

Kai Hu, Michelle M. Riehle, Vedbar S. Khadka, Jiannong Xu

Vedbar S. Khadka

Indexed papers

Top data-sharing exemplar

Papers