Sean M. Gibbons

Also affiliated with University of Washington, University of Washington Medical Center, Institute for Systems Biology, InSysBio (Russia)

Biochemistry, Genetics and Molecular BiologyMedicineEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.9Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

Nature Communications(2017)10.1038/s41467-017-01973-8

Top 3%

6.9DataRank

Top 3%1042 citations

Sean M. Gibbons, Thomas Gurry, Rafael A. Irizarry, Eric J. Alm, Claire Duvallet

Papers

Driven by 31 papers — median percentile 97. Top paper: “Meta-analysis of gut microbiome studies identifies disease-specific and shared responses”.

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

Nature Communications(2017)10.1038/s41467-017-01973-8

Top 3%

6.9DataRank

Top 3%1042 citations

Sean M. Gibbons, Thomas Gurry, Rafael A. Irizarry, Eric J. Alm, Claire Duvallet

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

mSystems(2021)10.1128/msystems.01194-20

N/A

2.0DataRank · unranked

72 citations

Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg +37 more

Industrialization drives convergent microbial and physiological shifts in the human metaorganism

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.20.683358

N/A

0.241DataRank · unranked

4 citations

Malte Rühlemann, Ana Paula Schaan, Yue Ma, Lucas Moitinho‐Silva, Eike Matthias Wacker +61 more

Bifidobacterium infantis supplementation versus placebo in early life to improve immunity in infants exposed to HIV: a protocol for a randomized trial

BMC Complementary Medicine and Therapies(2023)10.1186/s12906-023-04208-0

N/A

0.186DataRank · unranked

2 citations

Lerato Rametse, Brandon Perumaul, Christian Diener, Sean M. Gibbons, Donald Nyangahu +4 more

Heterogeneity in statin responses explained by variation in the human gut microbiome

medRxiv(2021)10.1101/2021.12.02.21267193

N/A

0DataRank · unranked

10 citations

Sergey A. Kornilov, Christian Diener, Matthew P. Conomos, Jennifer C. Lovejoy, Paola Sebastiani +7 more

Genome–microbiome interplay provides insight into the determinants of the human blood metabolome

Nature Metabolism(2022)10.1038/s42255-022-00670-1

N/A

0DataRank · unranked

100 citations

Chengzhen L. Dai, Tomasz Wilmanski, Priyanka Baloni, Brett Smith, Noa Rappaport +4 more

Heterogeneity in statin responses explained by variation in the human gut microbiome

Med(2022)10.1016/j.medj.2022.04.007

N/A

0DataRank · unranked

68 citations

Sergey A. Kornilov, Christian Diener, Matthew P. Conomos, Jennifer C. Lovejoy, Paola Sebastiani +7 more

Healthy aging and the human gut microbiome: why we cannot just turn back the clock

Nature Aging(2022)10.1038/s43587-022-00294-w

N/A

0DataRank · unranked

58 citations

Sean M. Gibbons, Nathan D. Price, Tomasz Wilmanski

Genome-microbiome interplay provides insight into the determinants of the human blood metabolome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.04.479172

N/A

0DataRank · unranked

8 citations

Chengzhen L. Dai, Tomasz Wilmanski, Priyanka Baloni, Brett Smith, Noa Rappaport +4 more

Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention

Nature Medicine(2023)10.1038/s41591-023-02248-0

N/A

0DataRank · unranked

147 citations

Tomasz Wilmanski, Christian Diener, John C. Earls, Anat Zimmer, Briana Lincoln +8 more

Disease-specific loss of microbial cross-feeding interactions in the human gut

Nature Communications(2023)10.1038/s41467-023-42112-w

N/A

0DataRank · unranked

59 citations

Caitlin Welsh, Christian Diener, Emily L. Gulliver, Emily L. Rutten, Remy B. Young +5 more

More is Different: Metabolic Modeling of Diverse Microbial Communities

mSystems(2023)10.1128/msystems.01270-22

N/A

0DataRank · unranked

39 citations

Sean M. Gibbons, Christian Diener

Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes

Nature Communications(2023)10.1038/s41467-023-41424-1

N/A

0DataRank · unranked

24 citations

Christian Diener, James G. Wilson, Jacob J. Valenzuela, Nitin S. Baliga, Sean M. Gibbons +1 more

Coarse graining the human gut microbiome

Cell Host & Microbe(2023)10.1016/j.chom.2023.06.001

N/A

0DataRank · unranked

2 citations

Sean M. Gibbons, Christian Diener

A changing gut virome ecological landscape with longevity

Trends in Microbiology(2023)10.1016/j.tim.2023.07.013

N/A

0DataRank · unranked

2 citations

Sean M. Gibbons, Tomasz Wilmanski

Personalized Clostridioides difficile engraftment risk prediction and probiotic therapy assessment in the human gut

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.28.538771

N/A

0DataRank · unranked

10 citations

Nitin S. Baliga, Christian Diener, Sean M. Gibbons, Alex V. Carr

Generally-healthy individuals with aberrant bowel movement frequencies show enrichment for microbially-derived blood metabolites associated with reduced kidney function

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.04.531100

N/A

0DataRank · unranked

9 citations

Christian Diener, Anne E. Levine, Tomasz Wilmanski, David L. Suskind, Alexandra Ralevski +6 more

Microbial community-scale metabolic modeling predicts personalized short chain fatty acid production profiles in the human gut

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.28.530516

N/A

0DataRank · unranked

8 citations

Tomasz Wilmanski, Katherine Ramos Sarmiento, Lisa Levy, Johanna W. Lampe, Thomas Gurry +6 more

Island biogeography theory and the gut: why taller people tend to harbor more diverse gut microbiomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.08.552554

N/A

0DataRank · unranked

1 citations

Alex V. Carr, Christian Diener, Kenneth J. Locey, Sean M. Gibbons, Katherine Ramos Sarmiento

Microbial community-scale metabolic modelling predicts personalized short-chain fatty acid production profiles in the human gut

Nature Microbiology(2024)10.1038/s41564-024-01728-4

N/A

0DataRank · unranked

93 citations

Tomasz Wilmanski, Katherine Ramos Sarmiento, Lisa Levy, Johanna W. Lampe, Thomas Gurry +6 more

Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes

Nature Communications(2024)10.1038/s41467-024-51062-w

N/A

0DataRank · unranked

30 citations

Jaron Thompson, Yili Qian, Eugenio I. Vivas, Christian Diener, Sean M. Gibbons +3 more

Metagenomic estimation of dietary intake from human stool

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.02.578701

N/A

0DataRank · unranked

13 citations

Sean M. Gibbons, Christian Diener

Metagenomic estimation of absolute bacterial biomass in the mammalian gut through host-derived read normalization

mSystems(2025)10.1128/msystems.00984-25

N/A

0DataRank · unranked

13 citations

Alex V. Carr, Crystal Perez, Katherine Ramos Sarmiento, Lisa Levy, Johanna W. Lampe +3 more

Personalized Clostridioides difficile colonization risk prediction and probiotic therapy assessment in the human gut

Cell Systems(2025)10.1016/j.cels.2025.101367

N/A

0DataRank · unranked

9 citations

Nitin S. Baliga, Christian Diener, Sean M. Gibbons, Alex V. Carr

The human gut microbiome and sleep across adulthood: associations and therapeutic potential

Letters in Applied Microbiology(2025)10.1093/lambio/ovaf043

N/A

0DataRank · unranked

4 citations

Melissa Basso, Kathrin Cohen Kadosh, Sean M. Gibbons, Jacob Cavon

APOE genotype and biological age impact inter-omic associations related to bioenergetics

Aging(2025)10.18632/aging.206243

N/A

0DataRank · unranked

3 citations

Kengo Watanabe, Tomasz Wilmanski, Michael S. Lustgarten, Andres V Ardisson Korat, Gwênlyn Glusman +14 more

Metagenomic estimation of absolute bacterial biomass in the mammalian gut through host-derived read normalization

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.07.631807

N/A

0DataRank · unranked

5 citations

Alex V. Carr, Crystal Perez, Katherine Ramos Sarmiento, Lisa Levy, Johanna W. Lampe +3 more

Metabolic modeling reveals determinants of prebiotic and probiotic treatment efficacy across two human intervention trials

medRxiv(2025)10.1101/2025.06.24.25330246

N/A

0DataRank · unranked

0 citations

Alex V. Carr, Sean M. Gibbons, Nick Quinn-Bohmann

Gut Microbiome Pattern Reflects Healthy Aging and Predicts Extended Survival in Humans

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.26.966747

N/A

0DataRank · unranked

7 citations

Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus +16 more

Gut microbiome pattern reflects healthy ageing and predicts survival in humans

Nature Metabolism(2021)10.1038/s42255-021-00348-0

N/A

0DataRank · unranked

682 citations

Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus +16 more

Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut

Communications Biology(2021)10.1038/s42003-021-01841-8

N/A

0DataRank · unranked

6 citations

Anna C. H. Hoge, Sean M. Kearney, Ulrike Kusebauch, Sushmita Patwardhan, Robert L. Moritz +3 more

Sean M. Gibbons

Indexed papers

Top data-sharing exemplar

Papers