Benjamin J. Callahan

Also affiliated with North Central State College

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “DADA2: High-resolution sample inference from Illumina amplicon data”.

DADA2: High-resolution sample inference from Illumina amplicon data

Nature Methods(2016)10.1038/nmeth.3869

N/A

1.6DataRank · unranked

35281 citations

Paul J. McMurdie, Michael J. Rosen, Andrew W Han, Amy Jo A Johnson, Michael Rosen +3 more

Gardnerella diversity and ecology in pregnancy and preterm birth

mSystems(2024)10.1128/msystems.01339-23

N/A

0.634DataRank · unranked

17 citations

Daniela S. Aliaga Goltsman, Megan Anderson, David A. Relman, Benjamin J. Callahan, Hanna L. Berman

Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing

mSystems(2024)10.1128/msystems.00757-23

N/A

0.529DataRank · unranked

10 citations

Lyndy Harden, Siddhartha Thakur, Benjamin J. Callahan, Dmitry Grinevich

Ultra-accurate Microbial Amplicon Sequencing Directly from Complex Samples with Synthetic Long Reads

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.07.192286

N/A

0DataRank · unranked

11 citations

Dmitry Grinevich, Siddhartha Thakur, Michael A Balamotis, Tuval Ben Yehezkel, Benjamin J. Callahan

Ultra-accurate microbial amplicon sequencing with synthetic long reads

Microbiome(2021)10.1186/s40168-021-01072-3

N/A

0DataRank · unranked

133 citations

Dmitry Grinevich, Siddhartha Thakur, Michael A. Balamotis, Tuval Ben Yehezkel, Benjamin J. Callahan

Identification of microbial taxa present in Ctenocephalides felis (cat flea) reveals widespread co-infection and associations with vector phylogeny

Parasites & Vectors(2022)10.1186/s13071-022-05487-1

N/A

0DataRank · unranked

24 citations

Hanna L. Berman, Benjamin J. Callahan, Edward B. Breitschwerdt, William Swain, Kelli Ferris +3 more

Phylogeny-guided microbiome OTU-specific association test (POST)

Microbiome(2022)10.1186/s40168-022-01266-3

N/A

0DataRank · unranked

15 citations

Benjamin J. Callahan, Michael C. Wu, Shannon T. Holloway, Hayden Brochu, Wenbin Lu +3 more

Implications of taxonomic bias for microbial differential-abundance analysis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.19.504330

N/A

0DataRank · unranked

25 citations

Jacob T. Nearing, Amy D. Willis, Karen G. Lloyd, Benjamin J. Callahan, Michael R. McLaren

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

Molecular Ecology Resources(2023)10.1111/1755-0998.13847

N/A

0DataRank · unranked

79 citations

Alejandro Abdala Asbun, Davide Albanese, Maria Bernard, Dominik Buchner, Benjamin J. Callahan +21 more

Rookery through rehabilitation: Microbial community assembly in newborn harbour seals after maternal separation

Environmental Microbiology(2023)10.1111/1462-2920.16444

N/A

0DataRank · unranked

9 citations

Benjamin J. Callahan, Elizabeth K. Costello, Elisabeth M. Bik, Christine Fontaine, Frances M. D. Gulland +2 more

Evaluation of SARS-CoV-2 identification methods through surveillance of companion animals in SARS-CoV-2-positive homes in North Carolina, March to December 2020

PeerJ(2023)10.7717/peerj.16310

N/A

0DataRank · unranked

5 citations

Elizabeth Petzold, Diya M. Uthappa, Coralei E. Neighbors, Anna R. Borough, Craig Gin +8 more

Gardnerella Diversity and Ecology in Pregnancy and Preterm Birth

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.03.527032

N/A

0DataRank · unranked

3 citations

Daniela S. Aliaga Goltsman, Megan Anderson, David A. Relman, Benjamin J. Callahan, Hanna L. Berman

Serovar-level Identification of Bacterial Foodborne Pathogens From Full-length 16S rRNA Gene Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546915

N/A

0DataRank · unranked

2 citations

Lyndy Harden, Siddhartha Thakur, Benjamin J. Callahan, Dmitry Grinevich

Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella

PLoS Pathogens(2024)10.1371/journal.ppat.1012301

N/A

0DataRank · unranked

2 citations

Craig Gin, Benjamin J. Callahan, Emma K. Sheriff, Breck A. Duerkop, Manuel Kleiner +1 more

Clostridioides difficile carriage in animals and the associated changes in the host fecal microbiota

Anaerobe(2020)10.1016/j.anaerobe.2020.102279

N/A

0DataRank · unranked

17 citations

Michael R. McLaren, Alissa J. Rivera, A.D. Reed, Naga S. Betrapally, T. Burdette +5 more

Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy: a pilot study

Animal Microbiome(2020)10.1186/s42523-020-00036-6

N/A

0DataRank · unranked

25 citations

Megan E. Jacob, Benjamin J. Callahan, Karen R. Muñana