Giovanni Parmigiani

Also affiliated with Cancer Research And Biostatistics, Dana-Farber Cancer Institute, Dana-Farber/Harvard Cancer Center

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

11.9Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Consensus Coding Sequences of Human Breast and Colorectal Cancers

Science(2006)10.1126/science.1133427

Top 1%

11.9DataRank

Top 1%3178 citations

Siân Jones, Laura D. Wood, D. Williams Parsons, Jimmy Lin, Thomas D. Barber +26 more

Papers

Driven by 49 papers — median percentile 99. Top paper: “The Consensus Coding Sequences of Human Breast and Colorectal Cancers”.

The Consensus Coding Sequences of Human Breast and Colorectal Cancers

Science(2006)10.1126/science.1133427

Top 1%

11.9DataRank

Top 1%3178 citations

Siân Jones, Laura D. Wood, D. Williams Parsons, Jimmy Lin, Thomas D. Barber +26 more

Assessing Reproducibility of a Protein Dynamics Study Using in Vivo Labeling and Liquid Chromatography Tandem Mass Spectrometry

Analytical Chemistry(2005)10.1021/ac048204b

N/A

1.9DataRank · unranked

24 citations

Giovanni Parmigiani, Akhilesh Pandey, Henrik Molina

ComBat-seq: batch effect adjustment for RNA-seq count data

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa078

N/A

1.1DataRank · unranked

1629 citations

Giovanni Parmigiani, W. Evan Johnson, Yuqing Zhang

BRCA1 Recruitment to Transcriptional Pause Sites Is Required for R-Loop-Driven DNA Damage Repair

Molecular Cell(2015)10.1016/j.molcel.2015.01.011

N/A

0.924DataRank · unranked

473 citations

Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula +13 more

Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma

Cancer Research(2020)10.1158/0008-5472.can-20-0521

N/A

0.728DataRank · unranked

127 citations

Sehyun Oh, Marcel Ramos, Lucas Schiffer, Rebecca S. LaRue, Christine Henzler +16 more

In-depth analysis of alternative splicing landscape in multiple myeloma and potential role of dysregulated splicing factors

Blood Cancer Journal(2022)10.1038/s41408-022-00759-6

N/A

0.690DataRank · unranked

25 citations

Mariateresa Fulciniti, Hervé Avet‐Loiseau, Michael Lopez, Sanika Derebail, Jill Corre +8 more

MSGene: a multistate model using genetic risk and the electronic health record applied to lifetime risk of coronary artery disease

Nature Communications(2024)10.1038/s41467-024-49296-9

N/A

0.613DataRank · unranked

15 citations

Ming Wai Yeung, Shaan Khurshid, So Mi Jemma Cho, Art Schuermans, J German +9 more

Bayesian combinatorial MultiStudy factor analysis

The Annals of Applied Statistics(2023)10.1214/22-aoas1715

N/A

0.434DataRank · unranked

9 citations

Roberta De Vito, Lorenzo Trippa, Giovanni Parmigiani, Isabella N. Grabski

Influenza Vaccination and COVID19 Mortality in the USA

medRxiv(2020)10.1101/2020.06.24.20129817

N/A

0DataRank · unranked

88 citations

Mohamed Omar, Wikum Dinalankara, Eddie L. Imada, Elizabeth Colantuoni, Giovanni Parmigiani +2 more

ComBat-Seq : batch effect adjustment for RNA-Seq count data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.13.904730

N/A

0DataRank · unranked

26 citations

Giovanni Parmigiani, W. Evan Johnson, Yuqing Zhang

Influenza Vaccination and COVID-19 Mortality in the USA: An Ecological Study

Vaccines(2021)10.3390/vaccines9050427

N/A

0DataRank · unranked

90 citations

Mohamed Omar, Wikum Dinalankara, Eddie L. Imada, Elizabeth Colantuoni, Giovanni Parmigiani +2 more

IgM-MM is predominantly a pre–germinal center disorder and has a distinct genomic and transcriptomic signature from WM

Blood(2021)10.1182/blood.2021011452

N/A

0DataRank · unranked

21 citations

Hervé Avet‐Loiseau, Raphaël Szalat, Anıl Aktaş Samur, Zachary R. Hunter, Masood A. Shammas +9 more

Multi-syndrome, multi-gene risk modeling for individuals with a family history of cancer with the novel R package PanelPRO

eLife(2021)10.7554/elife.68699

N/A

0DataRank · unranked

19 citations

Jane W. Liang, Qing Zhang, Theodore Huang, Christine Choirat, Giovanni Parmigiani +2 more

Gene Expression Pathways in Prostate Tissue Associated with Vigorous Physical Activity in Prostate Cancer

Cancer Epidemiology Biomarkers & Prevention(2021)10.1158/1055-9965.epi-20-1461

N/A

0DataRank · unranked

4 citations

Giovanni Parmigiani, Edward L. Giovannucci, Eric B. Rimm, Svitlana Tyekucheva, Massimo Loda +6 more

Extent, impact, and mitigation of batch effects in tumor biomarker studies using tissue microarrays

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.29.450369

N/A

0DataRank · unranked

3 citations

Svitlana Tyekucheva, Molin Wang, Travis Gerke, Jane B. Vaselkiv, Kathryn L. Penney +8 more

Extending Models Via Gradient Boosting: An Application to Mendelian Models

arXiv (Cornell University)(2021)10.48550/arxiv.2105.06559

N/A

0DataRank · unranked

0 citations

Gregory Idos, Christine Hong, Stephen B. Gruber, Giovanni Parmigiani, Danielle Braun +1 more

Validity and Relative Validity of Alternative Methods of Assessing Physical Activity in Epidemiologic Studies: Findings From the Men’s Lifestyle Validation Study

American Journal of Epidemiology(2022)10.1093/aje/kwac051

N/A

0DataRank · unranked

25 citations

Andrea K. Chomistek, Junaidah B. Barnett, Kerry L. Ivey, Laila Al‐Shaar, Susan B. Roberts +10 more

A validation of models for prediction of pathogenic variants in mismatch repair genes

Genetics in Medicine(2022)10.1016/j.gim.2022.07.004

N/A

0DataRank · unranked

5 citations

Amanda L. Blackford, Theodore Huang, Jianfeng Ke, Nofal Ouardaoui, Lorenzo Trippa +19 more

High-dose melphalan treatment significantly increases mutational burden at relapse in multiple myeloma

Blood(2023)10.1182/blood.2022017094

N/A

0DataRank · unranked

48 citations

Marco Roncador, Anıl Aktaş Samur, Mariateresa Fulciniti, Abdul Hamid Bazarbachi, Raphaël Szalat +14 more

Combining Breast Cancer Risk Prediction Models

Cancers(2023)10.3390/cancers15041090

N/A

0DataRank · unranked

18 citations

Theodore Huang, Anne Marie McCarthy, Kevin S. Hughes, Alan Semine, Hajime Uno +4 more

Clinical implications of conflicting variant interpretations in the cancer genetics clinic

Genetics in Medicine(2023)10.1016/j.gim.2023.100837

N/A

0DataRank · unranked

7 citations

Julie O. Culver, Yuxi Liu, Yunqi Yang, Charité Ricker, Rachel Hodan +15 more

Cross-Study Replicability in Cluster Analysis

Statistical Science(2023)10.1214/22-sts871

N/A

0DataRank · unranked

4 citations

Emma G. Thomas, Giovanni Parmigiani, Svitlana Tyekucheva, Lorenzo Trippa, Lorenzo Masoero

Bayesian Meta-Analysis of Penetrance for Cancer Risk

arXiv (Cornell University)(2023)10.48550/arxiv.2304.01912

N/A

0DataRank · unranked

2 citations

Danielle Braun, Giovanni Parmigiani, Swati Biswas, Thanthirige Lakshika M. Ruberu

Meta-Analysis of Breast Cancer Risk for Individuals with PALB2 Pathogenic Variants

medRxiv(2023)10.1101/2023.05.31.23290791

N/A

0DataRank · unranked

2 citations

Danielle Braun, Giovanni Parmigiani, Swati Biswas, Thanthirige Lakshika M. Ruberu

sMTL: Sparse Multi-Task Learning

(2023)10.32614/cran.package.smtl

N/A

0DataRank · unranked

1 citations

Kayhan Behdin, Giovanni Parmigiani, Rahul Mazumder, Gabriel Loewinger

Data from A Primary Xenograft Model of Small-Cell Lung Cancer Reveals Irreversible Changes in Gene Expression Imposed by Culture In vitro

(2023)10.1158/0008-5472.c.6499458

N/A

0DataRank · unranked

0 citations

Luigi Marchionni, Jared S. Hierman, Jonathan T. Rhodes, Wendy L. Devereux, Charles M. Rudin +6 more

Data from Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma

(2023)10.1158/1078-0432.c.6528887.v1

N/A

0DataRank · unranked

0 citations

Lavanya Kannan, Ludwig Geistlinger, Victor Kofia, Zhaleh Safikhani, Deena M.A. Gendoo +5 more

Multi-Study R-Learner for Estimating Heterogeneous Treatment Effects Across Studies Using Statistical Machine Learning

arXiv (Cornell University)(2023)10.48550/arxiv.2306.01086

N/A

0DataRank · unranked

0 citations

Boyu Ren, Prasad Patil, Giovanni Parmigiani, Cathy Shyr

Bone marrow stromal cells induce chromatin remodeling in multiple myeloma cells leading to transcriptional changes

Nature Communications(2024)10.1038/s41467-024-47793-5

N/A

0DataRank · unranked

24 citations

Raphaël Szalat, Srikanth Talluri, Mariateresa Fulciniti, Hervé Avet‐Loiseau, Giovanni Parmigiani +3 more

Meta‐analysis of breast cancer risk for individuals with PALB2 pathogenic variants

Genetic Epidemiology(2024)10.1002/gepi.22561

N/A

0DataRank · unranked

10 citations

Danielle Braun, Giovanni Parmigiani, Swati Biswas, Thanthirige Lakshika M. Ruberu

Optimal ensemble construction for multistudy prediction with applications to mortality estimation

Statistics in Medicine(2024)10.1002/sim.10006

N/A

0DataRank · unranked

3 citations

Rolando Acosta Nunez, Rahul Mazumder, Giovanni Parmigiani, Gabriel Loewinger

Bayesian meta-analysis of penetrance for cancer risk

Biometrics(2024)10.1093/biomtc/ujae038

N/A

0DataRank · unranked

7 citations

Danielle Braun, Giovanni Parmigiani, Swati Biswas, Thanthirige Lakshika M Ruberu

Multi-study R -learner for estimating heterogeneous treatment effects across studies using statistical machine learning

Biostatistics(2024)10.1093/biostatistics/kxaf040

N/A

0DataRank · unranked

1 citations

Boyu Ren, Prasad Patil, Giovanni Parmigiani, Cathy Shyr

Adjusting for Ascertainment Bias in Meta-Analysis of Penetrance for Cancer Risk

arXiv (Cornell University)(2024)10.48550/arxiv.2402.15030

N/A

0DataRank · unranked

1 citations

Danielle Braun, Giovanni Parmigiani, Swati Biswas, Thanthirige Lakshika M. Ruberu

fdrSAFE: Selective Aggregation for Local False Discovery Rate Estimation

arXiv (Cornell University)(2024)10.48550/arxiv.2401.12865

N/A

0DataRank · unranked

0 citations

Giovanni Parmigiani, Jenna M. Landy

Shared and Study-specific Dietary Patterns and Head and Neck Cancer Risk in an International Consortium

UNC Libraries(2024)10.17615/636h-m483

N/A

0DataRank · unranked

0 citations

Diego Serraino, Shih‐Chang Chuang, C. La Vecchia, Stimson Schantz, M. McClean +15 more

Aladynoulli: A Bayesian approach to disease progression modeling for genomic discovery and clinical prediction

medRxiv(2024)10.1101/2024.09.29.24314557

N/A

0DataRank · unranked

0 citations

Yi Ding, Tetsushi Nakao, Xilin Jiang, Anika Misra, Whitney Hornsby +5 more

Flexible and Efficient Estimation of Causal Effects with Error-Prone Exposures: A Control Variates Approach for Measurement Error

arXiv (Cornell University)(2024)10.48550/arxiv.2410.12590

N/A

0DataRank · unranked

0 citations

Rachel C. Nethery, Bryan E. Shepherd, Giovanni Parmigiani, Kevin Josey, Keith Barnatchez

The penetrance R package for estimation of age specific risk in family-based studies

Bioinformatics Advances(2024)10.1093/bioadv/vbaf154

N/A

0DataRank · unranked

0 citations

Danielle Braun, Giovanni Parmigiani, Nicolas Kubista

Variant‐Specific Mendelian Risk Prediction Model

Statistics in Medicine(2025)10.1002/sim.70342

N/A

0DataRank · unranked

0 citations

Eunchan Bae, Theodore Huang, Jinbo Chen, Stephen B. Gruber, Gregory Idos +4 more

Multi-task learning for sparsity pattern heterogeneity: statistical and computational perspectives

Journal of the Royal Statistical Society Series B (Statistical Methodology)(2025)10.1093/jrsssb/qkaf076

N/A

0DataRank · unranked

0 citations

Gabriel Loewinger, Kenneth T. Kishida, Giovanni Parmigiani, Rahul Mazumder, Kayhan Behdin

Analysis of mutational signatures in multiple cancer studies: Recent Bayesian tools

Journal of Cancer Biology(2025)10.46439/cancerbiology.6.080

N/A

0DataRank · unranked

0 citations

Blake Hansen, Isabella N. Grabski, Lorenzo Trippa, Giovanni Parmigiani, Roberta De Vito

Penetrance of Breast and Ovarian Cancer in Women Who Carry a BRCA1/2 Mutation and Do Not Use Risk-Reducing Salpingo-Oophorectomy: An Updated Meta-Analysis

JNCI Cancer Spectrum(2020)10.1093/jncics/pkaa029

N/A

0DataRank · unranked

96 citations

Eunchan Bae, Lingjiao Zhang, Kevin S. Hughes, Giovanni Parmigiani, Danielle Braun +2 more

Multiplex Immunofluorescence in Formalin-Fixed Paraffin-Embedded Tumor Tissue to Identify Single-Cell–Level PI3K Pathway Activation

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-20-2000

N/A

0DataRank · unranked

13 citations

Ying Huang, Svitlana Tyekucheva, Travis Gerke, Clyde Bango, Habiba Elfandy +8 more

Penetrance of Colorectal Cancer Among Mismatch Repair Gene Mutation Carriers: A Meta-Analysis

JNCI Cancer Spectrum(2020)10.1093/jncics/pkaa027

N/A

0DataRank · unranked

37 citations

Yan Wang, Kevin S. Hughes, Giovanni Parmigiani, Danielle Braun, Cathy Wang

Robustifying genomic classifiers to batch effects via ensemble learning

Bioinformatics(2020)10.1093/bioinformatics/btaa986

N/A

0DataRank · unranked

24 citations

Prasad Patil, W. Evan Johnson, Giovanni Parmigiani, Yuqing Zhang

Receiver operating characteristic curves with an indeterminacy zone

Pattern Recognition Letters(2020)10.1016/j.patrec.2020.04.035

N/A

0DataRank · unranked

6 citations

Giovanni Parmigiani

Estimating the Effects of Fine Particulate Matter on 432 Cardiovascular Diseases Using Multi-Outcome Regression With Tree-Structured Shrinkage

Journal of the American Statistical Association(2020)10.1080/01621459.2020.1722134

N/A

0DataRank · unranked

5 citations

Lorenzo Trippa, Giovanni Parmigiani, Francesca Dominici, Emma G. Thomas

Statistical approaches for meta‐analysis of genetic mutation prevalence

Genetic Epidemiology(2020)10.1002/gepi.22364

N/A

0DataRank · unranked

1 citations

Giovanni Parmigiani, Danielle Braun, Margaux L. A. Hujoel

Giovanni Parmigiani

Indexed papers

Top data-sharing exemplar

Papers