Ye Zheng

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa

Also affiliated with The University of Texas MD Anderson Cancer Center, Hebei University of Technology, Wenzhou Medical University, UNSW Sydney, Guangzhou University, Fred Hutch Cancer Center, Mayo Clinic in Arizona, Zhejiang Taizhou Hospital, Qiannan Normal College For Nationalities, Taizhou University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression”.

Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression

Nature Biotechnology(2021)10.1038/s41587-021-00865-z

N/A

0.805DataRank · unranked

213 citations

Scott N. Furlan, Anca B. Mihalas, Hatice S Kaya-Okur, Abdullah H. Feroze, Samuel Emerson +10 more

RNA polymerase II at histone genes predicts outcome in human cancer

Science(2025)10.1126/science.ads2169

N/A

0.735DataRank · unranked

42 citations

Ye Zheng, Ronald M. Paranal, Yiling Xu, Jacob E. Greene, Jorja G. Henikoff +7 more

scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data

Bioinformatics(2022)10.1093/bioinformatics/btac372

N/A

0.373DataRank · unranked

11 citations

Ye Zheng, Sündüz Keleş, Siqi Shen

Normalization and De-noising of Single-cell Hi-C Data with BandNorm and 3DVI

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.434870

N/A

0.330DataRank · unranked

8 citations

Siqi Shen, Sündüz Keleş, Ye Zheng

Regulatory architecture of the RCA gene cluster captures an intragenic TAD boundary, CTCF-mediated chromatin looping and a long-range intergenic enhancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.16.941070

N/A

0.208DataRank · unranked

3 citations

Joshua S. Clayton, Rafael D. Acemel, Ye Zheng, Rhonda L. Taylor, Sündüz Keleş +7 more

ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets

Research Square(2024)10.21203/rs.3.rs-4572811/v1

N/A

0.165DataRank · unranked

2 citations

Ye Zheng, Daniel P. Caron, Ju Han Kim, Seong Chan Jun, Yuan Tian +4 more

Regulatory Architecture of the RCA Gene Cluster Captures an Intragenic TAD Boundary, CTCF-Mediated Chromatin Looping and a Long-Range Intergenic Enhancer

Frontiers in Immunology(2022)10.3389/fimmu.2022.901747

N/A

0DataRank · unranked

11 citations

Joshua S. Clayton, Rafael D. Acemel, Ye Zheng, Rhonda L. Taylor, Sündüz Keleş +7 more

ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.29.489989

N/A

0DataRank · unranked

10 citations

Daniel P. Caron, Ju Yeong Kim, Seong-Hwan Jun, Yuan Tian, Mair Florian +4 more

Defining cellular population dynamics at single cell resolution during prostate cancer progression

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.02.482711

N/A

0DataRank · unranked

2 citations

Sonali Arora, Ye Zheng, Erica T. Goddard, Ilsa M. Coleman, Anson T. Ku +13 more

Discovering How Heme Controls Genome Function Through Heme-omics

Cell Reports(2020)10.1016/j.celrep.2020.107832

N/A

0DataRank · unranked

47 citations

Ye Zheng, Xin Liu, Yuannyu Zhang, Gretchen Seim, Nobuyuki Tanimura +8 more

Total whole-arm chromosome losses predict malignancy in human cancer

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2505385122

N/A

0DataRank · unranked

8 citations

Kami Ahmad, Steven Henikoff, Ye Zheng

Single-cell analysis of chromatin silencing programs in development and tumor progression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.04.282418

N/A

0DataRank · unranked

12 citations

Scott N. Furlan, Anca B. Mihalas, Hatice S Kaya-Okur, Abdullah H. Feroze, Samuel Emerson +10 more

Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder

PLoS Genetics(2021)10.1371/journal.pgen.1009309

N/A

0DataRank · unranked

23 citations

Yuchang Wu, Junha Shin, Ye Zheng, Alireza Fotuhi Siahpirani, Yupei Lin +8 more

scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.22.465520

N/A

0DataRank · unranked

0 citations

Ye Zheng, Sündüz Keleş, Siqi Shen

Transcription Elongation Machinery Is a Druggable Dependency and Potentiates Immunotherapy in Glioblastoma Stem Cells

Cancer Discovery(2022)10.1158/2159-8290.cd-20-1848

N/A

0DataRank · unranked

97 citations

Linjie Zhao, Jia Shen, Zhengyu Liang, Qiulian Wu, Kailin Yang +25 more

Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D

Genome biology(2022)10.1186/s13059-022-02774-z

N/A

0DataRank · unranked

51 citations

Siqi Shen, Sündüz Keleş, Ye Zheng