Oliver Stegle

Also affiliated with Heidelberg University, Wellcome Sanger Institute, European Molecular Biology Laboratory, Institut thématique Génétique, génomique et bioinformatique, European Molecular Biology Laboratory

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

49.1Author DataRank

Indexed papers

13in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 13 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Papers

Driven by 45 papers — median percentile 95. Top paper: “A global reference for human genetic variation”.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

An integrated map of structural variation in 2,504 human genomes

Nature(2015)10.1038/nature15394

Top 2%

9.1DataRank

Top 2%2686 citations

Tobias Rausch, Marianne K. DeGorter, Robert E. Handsaker, Alexej Abyzov, Joanna M. M. Howson +75 more

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

Genome biology(2020)10.1186/s13059-020-1949-z

N/A

7.7DataRank · unranked

360 citations

Jovan Tanevski, Javier Perales-Patón, Jan Gleixner, Manu P. Kumar, Elisabetta Mereu +7 more

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science(2021)10.1126/science.abf7117

Top 4%

5.7DataRank

Top 4%812 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +60 more

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8

Top 4%

5.4DataRank

Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

The Organoid Cell Atlas

Nature Biotechnology(2020)10.1038/s41587-020-00762-x

Top 6%

3.8DataRank

Top 6%172 citations

Michael Boutros, J. Gray Camp, Hans Clevers, Juergen A. Knoblich, Prisca Liberali +7 more

OME-Zarr: a cloud-optimized bioimaging file format with international community support

Histochemistry and Cell Biology(2023)10.1007/s00418-023-02209-1

N/A

2.8DataRank · unranked

123 citations

Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Eva Maxfield Brown +64 more

SpatialData: an open and universal data framework for spatial omics

Nature Methods(2024)10.1038/s41592-024-02212-x

N/A

2.7DataRank · unranked

173 citations

Giovanni Palla, Kevin A. Yamauchi, Valeh Valiollah Pour Amiri, Elyas Heidari, Tim Treis +17 more

High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

Nature Communications(2020)10.1038/s41467-019-13885-w

Top 13%

1.6DataRank

Top 13%76 citations

Fengju Chen, Nuno A. Fonseca, Yao He, Masashi Fujita, Hidewaki Nakagawa +91 more

SpatialData: an open and universal data framework for spatial omics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.05.539647

N/A

1.3DataRank · unranked

32 citations

Giovanni Palla, Kevin A. Yamauchi, Valeh Valiollah Pour Amiri, Elyas Heidari, Tim Treis +9 more

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/208330

Top 17%

1.2DataRank

Top 17%26 citations

Grace Tiao, Bin Zhu, Tobias Rausch, Francesc Muyas, Alan J. Robertson +108 more

Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats

Nature Communications(2020)10.1038/s41467-020-16481-5

N/A

1.2DataRank · unranked

38 citations

Erin N. Smith, Matteo D’Antonio, Marc Jan Bonder, William W. Greenwald, Agnieszka D’Antonio‐Chronowska +14 more

Eleven grand challenges in single-cell data science

Genome Biology(2020)10.1186/s13059-020-1926-6

N/A

1.1DataRank · unranked

1396 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +49 more

Computational and analytical challenges in single-cell transcriptomics

Nature Reviews Genetics(2015)10.1038/nrg3833

N/A

1.1DataRank · unranked

1312 citations

Sarah A. Teichmann, John C. Marioni, Oliver Stegle

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

Nature Biotechnology(2015)10.1038/nbt.3102

N/A

1.1DataRank · unranked

1296 citations

Kedar N Natarajan, F Paolo Casale, Valentina Proserpio, Antonio Scialdone, Fabian Joachim Theis +6 more

Swarm Learning for decentralized and confidential clinical machine learning

Nature(2021)10.1038/s41586-021-03583-3

N/A

1.0DataRank · unranked

821 citations

Hartmut Schultze, Krishnaprasad Lingadahalli Shastry, Sathyanarayanan Manamohan, Saikat Mukherjee, Vishesh Garg +183 more

The Polygenic and Monogenic Basis of Blood Traits and Diseases

Cell(2020)10.1016/j.cell.2020.08.008

N/A

0.988DataRank · unranked

722 citations

Erik L. Bao, Parsa Akbari, Caleb A. Lareau, Abdou Mousas, Tao Jiang +95 more

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

Nature Biotechnology(2020)10.1038/s41587-020-0469-4

N/A

0.940DataRank · unranked

526 citations

Atefeh Lafzi, Catia Moutinho, Christoph Ziegenhain, Davis J. McCarthy, Adrián Álvarez-Varela +40 more

Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19

Immunity(2020)10.1016/j.immuni.2020.11.017

N/A

0.901DataRank · unranked

405 citations

Neha Mishra, Florian Tran, Thomas Bahmer, Lena Best, Johanna I. Blase +169 more

Effect of predicted protein-truncating genetic variants on the human transcriptome

Science(2015)10.1126/science.1261877

N/A

0.877DataRank · unranked

345 citations

Matti Pirinen, Donald F. Conrad, Monkol Lek, Emily K. Tsang, Konrad J. Karczewski +206 more

LifeTime and improving European healthcare through cell-based interceptive medicine

Nature(2020)10.1038/s41586-020-2715-9

N/A

0.747DataRank · unranked

144 citations

Geneviève Almouzni, Stanislaw A. Gorski, Stein Aerts, Ido Amit, Michela G. Bertero +178 more

Properties of structural variants and short tandem repeats associated with gene expression and complex traits

Nature Communications(2020)10.1038/s41467-020-16482-4

N/A

0.741DataRank · unranked

139 citations

Matteo D’Antonio, Marc Jan Bonder, Craig Smail, Margaret K. R. Donovan, William W. Greenwald +15 more

Author response: The Human Cell Atlas

(2017)10.7554/elife.27041.011

Top 29%

0.700DataRank

Top 29%14 citations

Sarah A. Teichmann, Matthew E. Hurles, Ido Amit, Kerstin Lindblad‐Toh, Bernd Bodenmiller +60 more

Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics

Nature Genetics(2021)10.1038/s41588-021-00800-7

N/A

0.650DataRank · unranked

75 citations

Craig Smail, Michael J. Gloudemans, Laure Frésard, David Jakubosky, Matteo D’Antonio +22 more

Cell2fate infers RNA velocity modules to improve cell fate prediction

Nature Methods(2025)10.1038/s41592-025-02608-3

N/A

0.533DataRank · unranked

34 citations

Fani Memi, Vitalii Kleshchevnikov, Sezgin Er, Brian Clarke, Oliver Stegle +2 more

Four Core Genotypes mice harbour a 3.2MB X-Y translocation that perturbs Tlr7 dosage

Nature Communications(2024)10.1038/s41467-024-52640-8

N/A

0.529DataRank · unranked

33 citations

Stefania Prete, James Cleland, Lauren M. Saunders, Job van Riet, Anja Schneider +11 more

Dissecting indirect genetic effects from peers in laboratory mice

Genome biology(2021)10.1186/s13059-021-02415-x

N/A

0.470DataRank · unranked

22 citations

Francesco Paolo Casale, Amanda M. Barkley‐Levenson, Nilgoun Farhadi, Charlotte Montillot, Binnaz Yalcin +4 more

12 Grand Challenges in Single-Cell Data Science

(2019)10.7287/peerj.preprints.27885v3

N/A

0.449DataRank · unranked

7 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

Genetic Analyses of Blood Cell Structure for Biological and Pharmacological Inference

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.30.927483

N/A

0.345DataRank · unranked

9 citations

Dragana Vuckovic, Tao Jiang, Kousik Kundu, Roman Kreuzhuber, Erik L. Bao +28 more

The Organoid Cell Atlas: A Rosetta Stone for Biomedical Discovery and Regenerative Therapy

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.4001718

Top 52%

0.331DataRank

Top 52%3 citations

Michael Boutros, J. Gray Camp, Hans Clevers, Juergen A. Knoblich, Prisca Liberali +5 more

12 Grand challenges in single-cell data science

(2019)10.7287/peerj.preprints.27885v2

N/A

0.330DataRank · unranked

5 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423102

Top 53%

0.322DataRank

Top 53%5 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +58 more

Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.20.480758

N/A

0.312DataRank · unranked

7 citations

René Snajder, Adrien Léger, Milena Simović, Oliver Stegle, Ewan Birney +4 more

Author response: The single-cell eQTLGen consortium

(2020)10.7554/elife.52155.sa2

N/A

0.241DataRank · unranked

4 citations

DH de Vries, Hilde E. Groot, Gosia Trynka, CC Hon, Marc Jan Bonder +12 more

12 Grand Challenges in Single-Cell Data Science

(2019)10.7287/peerj.preprints.27885

N/A

0.228DataRank · unranked

2 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.220DataRank · unranked

3 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

12 Grand challenges in single-cell data science

(2019)10.7287/peerj.preprints.27885v1

N/A

0.193DataRank · unranked

2 citations

Johannes Köster, Ewa Szcureck, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos +50 more

Genetic architecture and mechanisms of host-microbiome interactions from a multi-cohort analysis of outbred laboratory rats

Nature Communications(2025)10.1038/s41467-025-66105-z

N/A

0.106DataRank · unranked

1 citations

Denghui Chen, Felipe Morillo, Jorge Garcia-Calleja, Apurva S. Chitre, Benjamin B. Johnson +31 more

Structural and transduction patterns of human-specific polymorphic SVA insertions

Mobile DNA(2025)10.1186/s13100-025-00373-w

N/A

0.104DataRank · unranked

1 citations

Mark Loftus, Emily C. Golba, Haley Abel, Hufsah Ashraf, Peter A. Audano +64 more

Genome-wide Studies of Verbal Declarative Memory in Nondemented Older People: The Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium

UNC Libraries(2020)10.17615/xs3t-3334

N/A

0DataRank · unranked

0 citations

Annette L. Fitzpatrick, Luigi Ferrucci, Paul M. Ridker, Bertram Müller-Myhsok, Arezoo Assareh +95 more

Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures

Cell Genomics(2023)10.1016/j.xgen.2023.100281

N/A

0DataRank · unranked

45 citations

René Snajder, Adrien Léger, Milena Simović, Mădălina Giurgiu, Laura Villacorta +8 more

Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation

Cell stem cell(2020)10.1016/j.stem.2020.07.019

N/A

0DataRank · unranked

55 citations

Stephanie Brown, Anne Czechanski, Selcan Aydin, Daniele Muraro, Yuanhua Huang +14 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

Oliver Stegle

Indexed papers

Top data-sharing exemplar

Papers