Joseph H. Davis

Also affiliated with Research & Diagnostic Antibodies (United States), Computational Physics (United States), Sky Ridge Medical Center, Massachusetts Institute of Technology

Biochemistry, Genetics and Molecular BiologyEconomics, Econometrics and Finance

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 25 papers. Top paper: “A proteolytic AAA+ machine poised to unfold protein substrates”.

A proteolytic AAA+ machine poised to unfold protein substrates

Nature Communications(2024)10.1038/s41467-024-53681-9

N/A

0.584DataRank · unranked

18 citations

Robert T. Sauer, Joseph H. Davis, Alireza Ghanbarpour

Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN

Nature Protocols(2022)10.1038/s41596-022-00763-x

N/A

0DataRank · unranked

79 citations

Barrett M. Powell, Ellen D. Zhong, Bonnie Berger, Joseph H. Davis, Laurel F. Kinman

Conformational landscape of the yeast SAGA complex as revealed by cryo-EM

Scientific Reports(2022)10.1038/s41598-022-16391-0

N/A

0DataRank · unranked

8 citations

Joeseph Felt, Ellen D. Zhong, Bonnie Berger, Joseph H. Davis, Calvin K. Yip +1 more

KsgA facilitates ribosomal small subunit maturation by proofreading a key structural lesion

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.13.499473

N/A

0DataRank · unranked

12 citations

Laurel F. Kinman, Dushyant Jahagirdar, Joaquı́n Ortega, Joseph H. Davis, Jingyu Sun

Uncovering structural ensembles from single particle cryo-EM data using cryoDRGN

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.09.503342

N/A

0DataRank · unranked

11 citations

Barrett M. Powell, Ellen D. Zhong, Bonnie Berger, Joseph H. Davis, Laurel F. Kinman

A closed translocation channel in the substrate-free AAA+ ClpXP protease diminishes rogue degradation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.27.505532

N/A

0DataRank · unranked

1 citations

Steven E. Cohen, Fei X, Tristan A. Bell, Tania A. Baker, Joseph H. Davis +2 more

The SspB adaptor drives structural changes in the AAA + ClpXP protease during ssrA-tagged substrate delivery

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.06.515074

N/A

0DataRank · unranked

1 citations

Fei X, Tania A. Baker, Joseph H. Davis, Robert T. Sauer, Alireza Ghanbarpour

KsgA facilitates ribosomal small subunit maturation by proofreading a key structural lesion

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01078-5

N/A

0DataRank · unranked

30 citations

Laurel F. Kinman, Dushyant Jahagirdar, Joaquı́n Ortega, Joseph H. Davis, Jingyu Sun

A closed translocation channel in the substrate-free AAA+ ClpXP protease diminishes rogue degradation

Nature Communications(2023)10.1038/s41467-023-43145-x

N/A

0DataRank · unranked

21 citations

Steven E. Cohen, Fei X, Laurel F. Kinman, Tristan A. Bell, Jia Jia Zhang +4 more

Application of Monolayer Graphene to Cryo-Electron Microscopy Grids for High-resolution Structure Determination

Journal of Visualized Experiments(2023)10.3791/66023

N/A

0DataRank · unranked

3 citations

Mira B. May, Joseph H. Davis, Andrew V. Grassetti

Learning structural heterogeneity from cryo-electron sub-tomograms with tomoDRGN

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.31.542975

N/A

0DataRank · unranked

20 citations

Joseph H. Davis, Barrett M. Powell

Application of monolayer graphene to cryo-electron microscopy grids for high-resolution structure determination

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.28.550908

N/A

0DataRank · unranked

5 citations

Mira B. May, Joseph H. Davis, Andrew V. Grassetti

A proteolytic AAA+ machine poised to unfold a protein substrate

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.14.571662

N/A

0DataRank · unranked

4 citations

Robert T. Sauer, Joseph H. Davis, Alireza Ghanbarpour

Imaging structurally dynamic ribosomes with cryogenic electron microscopy

arXiv (Cornell University)(2023)10.48550/arxiv.2308.16019

N/A

0DataRank · unranked

1 citations

Mira B. May, Barrett M. Powell, Joseph H. Davis, Samantha M. Webster

Learning structural heterogeneity from cryo-electron sub-tomograms with tomoDRGN

Nature Methods(2024)10.1038/s41592-024-02210-z

N/A

0DataRank · unranked

55 citations

Joseph H. Davis, Barrett M. Powell

Rapid structural analysis of bacterial ribosomes in situ

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.22.586148

N/A

0DataRank · unranked

2 citations

Tyler S. Brant, Joseph H. Davis, Shyamal Mosalaganti, Barrett M. Powell

NCOA4 initiates ferritinophagy by binding GATE16 using two highly avid short linear interaction motifs

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.09.597909

N/A

0DataRank · unranked

1 citations

Joseph H. Davis, A. Masaji Lee

Bulk and selective autophagy cooperate to remodel a fungal proteome in response to changing nutrient availability

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614842

N/A

0DataRank · unranked

0 citations

Jean‐Claude Farré, Danica S. Cui, Suresh Subramani, Joseph H. Davis, Bertina Telusma

An asymmetric nautilus-like HflK/C assembly controls FtsH proteolysis of membrane proteins

The EMBO Journal(2025)10.1038/s44318-025-00408-1

N/A

0DataRank · unranked

22 citations

Bertina Telusma, Barrett M. Powell, Jia Jia Zhang, Isabella Bolstad, Carolyn Vargas +5 more

Rapid structural analysis of bacterial ribosomes in situ

Communications Biology(2025)10.1038/s42003-025-07586-y

N/A

0DataRank · unranked

11 citations

Tyler S. Brant, Joseph H. Davis, Shyamal Mosalaganti, Barrett M. Powell

Automated model-free analysis of cryo-EM volume ensembles with SIREn

Structure(2025)10.1016/j.str.2025.02.004

N/A

0DataRank · unranked

5 citations

Maria V. Carreira, Barrett M. Powell, Joseph H. Davis, Laurel F. Kinman

Bulk and selective autophagy cooperate to remodel a fungal proteome in response to changing nutrient availability

Cell Reports(2025)10.1016/j.celrep.2025.116585

N/A

0DataRank · unranked

3 citations

Jean-Claude Farré, Danica S. Cui, Suresh Subramani, Joseph H. Davis, Bertina Telusma

Structural insights into the Pseudomonas aeruginosaClpP1•ClpP2 heterocomplex and its interactions with the AAA+ ClpX unfoldase

Protein Science(2025)10.1002/pro.70310

N/A

0DataRank · unranked

2 citations

Jia Jia Zhang, Joseph H. Davis, Tania A. Baker, Robert T. Sauer, Alireza Ghanbarpour

CryoDRGN: Reconstruction of heterogeneous structures from cryo-electron micrographs using neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.27.003871

N/A

0DataRank · unranked

16 citations

Tristan Bepler, Bonnie Berger, Joseph H. Davis, Ellen D. Zhong

An open axial channel of the AAA ClpXP protease enhances degradation of specific classes of protein substrates

Protein Science(2025)10.1002/pro.70372

N/A

0DataRank · unranked

0 citations

Isabella Bolstad, Joseph H. Davis, Robert T. Sauer, Alireza Ghanbarpour, Yifei Lyu