🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

J. Gregory Caporaso

Northern Arizona University

ORCID: 0000-0002-8865-1670
Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
3.8Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Representative oral microbiome data for the US population: the National Health and Nutrition Examination Survey

The Lancet Microbe(2022)10.1016/s2666-5247(22)00333-0
Top 14%
1.5DataRank
Top 14%34 citations

Anil K. Chaturvedi, Martin J. Blaser, Nicholas A. Bokulich, J. Gregory Caporaso, Maura L. Gillison +9 more

Papers

Driven by 32 papers — median percentile 77. Top paper: “The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View”.

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

Trends in cancer(2020)10.1016/j.trecan.2020.01.004
N/A
6.0DataRank · unranked
268 citations

Vincent B. Young, Joseph D. Skufca, Fiona Ginty, Traci L. Testerman, Alexander T. Pearson +25 more

Representative oral microbiome data for the US population: the National Health and Nutrition Examination Survey

The Lancet Microbe(2022)10.1016/s2666-5247(22)00333-0
Top 14%
1.5DataRank
Top 14%34 citations

Anil K. Chaturvedi, Martin J. Blaser, Nicholas A. Bokulich, J. Gregory Caporaso, Maura L. Gillison +9 more

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

Proceedings of the National Academy of Sciences(2010)10.1073/pnas.1000080107
N/A
1.4DataRank · unranked
9892 citations

Christian L. Lauber, William A. Walters, Donna Berg-Lyons, Catherine A Lozupone, Peter J. Turnbaugh +4 more

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Nature Biotechnology(2013)10.1038/nbt.2676
N/A
1.4DataRank · unranked
9259 citations

Jesse Zaneveld, J. Gregory Caporaso, Daniel McDonald, Dan Knights, Joshua A Reyes +8 more

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

The ISME Journal(2012)10.1038/ismej.2012.8
N/A
1.4DataRank · unranked
9017 citations

Christian L. Lauber, William A. Walters, Donna Berg-Lyons, James Huntley, Noah Fierer +10 more

Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort

Cancer Epidemiology Biomarkers & Prevention(2020)10.1158/1055-9965.epi-20-0824
Top 17%
1.2DataRank
Top 17%34 citations

Karl‐Heinz Herzig, J. Gregory Caporaso, Andriy Derkach, Yunhu Wan, Doratha A. Byrd +8 more

Qiita: rapid, web-enabled microbiome meta-analysis

Nature Methods(2018)10.1038/s41592-018-0141-9
N/A
0.982DataRank · unranked
697 citations

Jose A. Navas-Molina, Tomasz Kosciolek, Daniel McDonald, Yoshiki Vázquez-Baeza, Gail Ackermann +24 more

Oral Microbiome Profile of the US Population

JAMA Network Open(2025)10.1001/jamanetworkopen.2025.8283
Top 28%
0.702DataRank
Top 28%31 citations

Emily Vogtmann, Jianxin Shi, Yukiko Yano, Martin J. Blaser, Nicholas A. Bokulich +14 more

The mouth of America: the oral microbiome profile of the US population

medRxiv(2024)10.1101/2024.12.03.24318415
Top 51%
0.340DataRank
Top 51%5 citations

Emily Vogtmann, Jianxin Shi, Yukiko Yano, Martin J. Blaser, Nicholas A. Bokulich +14 more

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009056
N/A
0DataRank · unranked
6 citations

Evan Bolyen, A. K. Adamov, Aeriel D. Belk, Emily M. Borsom, Zachary M. Burcham +26 more

The Role of Curcumin in Modulating Colonic Microbiota During Colitis and Colon Cancer Prevention:

UNC Libraries(2021)10.17615/g6sr-jd49
N/A
0DataRank · unranked
0 citations

Monica T. Midura‐Kiela, Fayez K. Ghishan, Rajalakshmy Ramalingam, Claire B. Larmonier, John Chase +7 more

The Oral Microbiome and Lung Cancer Risk: An Analysis of 3 Prospective Cohort Studies

JNCI Journal of the National Cancer Institute(2022)10.1093/jnci/djac149
N/A
0DataRank · unranked
86 citations

Xing Hua, Guoqin Yu, Vaishnavi Purandare, Autumn G. Hullings, Dantong Shao +19 more

Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009876
N/A
0DataRank · unranked
73 citations

Paweł Łaniewski, A. K. Adamov, Dana M. Chase, J. Gregory Caporaso, Melissa M. Herbst‐Kralovetz +1 more

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

Molecular Ecology Resources(2023)10.1111/1755-0998.13847
N/A
0DataRank · unranked
79 citations

Alejandro Abdala Asbun, Davide Albanese, Maria Bernard, Dominik Buchner, Benjamin J. Callahan +21 more

Oligofructose improves small intestinal lipid-sensing mechanisms via alterations to the small intestinal microbiota

Microbiome(2023)10.1186/s40168-023-01590-2
N/A
0DataRank · unranked
37 citations

Chloe Herman, Rachel K. Meyer, Eve Beauchemin, Archana Kangath, Adelina I. Lane +10 more

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

arXiv (Cornell University)(2023)10.48550/arxiv.2306.03255
N/A
0DataRank · unranked
2 citations

Andrei A. Ivanov, John Chamberlin, David A. Hanauer, Candace L. Savonen, Mary J. Goldman +22 more

Viewing Native American Cervical Cancer Disparities through the Lens of the Vaginal Microbiome: A Pilot Study

Cancer Prevention Research(2024)10.1158/1940-6207.capr-24-0286
N/A
0DataRank · unranked
10 citations

Tawnjerae R. Joe, Nicole R. Jimenez, Tristen L. Eddie, Skyler J. Bordeaux, Verity Quiroz +7 more

Environmental and structural factors associated with bacterial diversity in household dust across the Arizona-Sonora border

Scientific Reports(2024)10.1038/s41598-024-63356-6
N/A
0DataRank · unranked
3 citations

Nicolás López-Gálvez, Chloe Herman, J. Gregory Caporaso, Emily K. Cope, Cecilia Rosales +7 more

Best practices to evaluate the impact of biomedical research software—metric collection beyond citations

Bioinformatics(2024)10.1093/bioinformatics/btae469
N/A
0DataRank · unranked
6 citations

Andrei A. Ivanov, John Chamberlin, David A. Hanauer, Candace L. Savonen, M Goldman +22 more

The oral microbiome and all-cause mortality in the US population

medRxiv(2024)10.1101/2024.12.03.24318413
N/A
0DataRank · unranked
3 citations

Yukiko Yano, Jianxin Shi, Yunhu Wan, Vaishnavi Purandare, Jody McLean +14 more

Assessing Engraftment Following Fecal Microbiota Transplant

PubMed(2024)10.48550/arxiv.2404.07325
N/A
0DataRank · unranked
2 citations

Bridget M. Barker, Thais Fernanda Bartelli, Vidhi Chandra, Rosa Krajmalnik‐Brown, Mary Jewell +7 more

The human oral microbiome and risk of colorectal cancer within three prospective cohort studies in the United States

Cancer(2025)10.1002/cncr.35802
N/A
0DataRank · unranked
6 citations

Yukiko Yano, Sémi Zouiouich, Xing Hua, Yunhu Wan, Vaishnavi Purandare +17 more

Facilitating bootstrapped and rarefaction-based microbiome diversity analysis with q2-boots

F1000Research(2025)10.12688/f1000research.156295.1
N/A
0DataRank · unranked
3 citations

Elizabeth Gehret, Chloe Herman, Jeff Meilander, Andrew Manley, Anthony Simard +3 more

The Oral Microbiome and All-Cause Mortality in a US Population-Representative Prospective Cohort

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf321
N/A
0DataRank · unranked
2 citations

Yukiko Yano, Jianxin Shi, Yunhu Wan, Vaishnavi Purandare, Jody McLean +14 more

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

F1000Research(2020)10.12688/f1000research.24751.2
N/A
0DataRank · unranked
16 citations

Matthew R. Dillon, Nicholas A. Bokulich, Jason T. Ladner, Brendan B. Larsen, Crystal M. Hepp +14 more

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

F1000Research(2020)10.12688/f1000research.24751.1
N/A
0DataRank · unranked
16 citations

Matthew R. Dillon, Nicholas A. Bokulich, Jason T. Ladner, Brendan B. Larsen, Crystal M. Hepp +13 more

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

mBio(2020)10.1128/mbio.02107-20
N/A
0DataRank · unranked
33 citations

Brendan B. Larsen, Jolene R. Bowers, Crystal M. Hepp, Evan Bolyen, Megan Folkerts +18 more

Defining the Pandemic at the State Level: Sequence-Based Epidemiology of the SARS-CoV-2 virus by the Arizona COVID-19 Genomics Union (ACGU)

medRxiv(2020)10.1101/2020.05.08.20095935
N/A
0DataRank · unranked
6 citations

Brendan B. Larsen, Jolene R. Bowers, Crystal M. Hepp, Evan Bolyen, Megan Folkerts +18 more

Integration of multi-omics data improves prediction of cervicovaginal microenvironment in cervical cancer

medRxiv(2020)10.1101/2020.08.27.20183426
N/A
0DataRank · unranked
4 citations

Paweł Łaniewski, Dana M. Chase, J. Gregory Caporaso, Melissa M. Herbst‐Kralovetz, Nicholas A. Bokulich

Soluble corn fiber reduces ovalbumin-induced sinonasal inflammation via the gut microbiota-airway axis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.23.216754
N/A
0DataRank · unranked
1 citations

Emily M. Borsom, Gabrielle M Orsini, Oliver Kask, Keehoon Lee, Allyson H. Hirsch +8 more

Leptospira in river and soil in a highly endemic area of Ecuador

BMC Microbiology(2021)10.1186/s12866-020-02069-y
N/A
0DataRank · unranked
33 citations

Verónica Barragán, J. Chiriboga, Chad Allen Weddell, Ligia Luna, Dulce J. Jiménez +11 more

Cigarette Smoking and Opium Use in Relation to the Oral Microbiota in Iran

Microbiology Spectrum(2021)10.1128/spectrum.00138-21
N/A
0DataRank · unranked
23 citations

Yongli Han, J. Gregory Caporaso, Nicholas A. Bokulich, Ashraf Mohamadkhani, Alireza Moayyedkazemi +15 more