🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Emily C. Fogarty

University of British Columbia

ORCID: 0000-0002-8957-9922

Also affiliated with Canada's Michael Smith Genome Sciences Centre

Biochemistry, Genetics and Molecular BiologyMedicineEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile
1.5Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome

Nature Communications(2022)10.1038/s41467-022-34853-x
Top 14%
1.5DataRank
Top 14%52 citations

Alexander Lemenze, Emily C. Fogarty, Avi Shah, Courtney Grady, Aubrey R. Odom-Mabey +7 more

Papers

Driven by 14 papers — median percentile 43. Top paper: “A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome”.

A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome

Nature Communications(2022)10.1038/s41467-022-34853-x
Top 14%
1.5DataRank
Top 14%52 citations

Alexander Lemenze, Emily C. Fogarty, Avi Shah, Courtney Grady, Aubrey R. Odom-Mabey +7 more

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

eLife(2023)10.7554/elife.89862
N/A
0.679DataRank · unranked
27 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.15.500236
Top 100%
0DataRank
Top 100%0 citations

Alexander Lemenze, Emily C. Fogarty, Avi Shah, Courtney Grady, Aubrey R. Odom-Mabey +7 more

Metabolic independence drives gut microbial colonization and resilience in health and disease

Genome biology(2023)10.1186/s13059-023-02924-x
N/A
0DataRank · unranked
103 citations

Jessika Füssel, Iva Veseli, Johanna Zaal DeLongchamp, Marisela Silva, Florian Trigodet +15 more

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.10.540289
N/A
0DataRank · unranked
16 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

(2023)10.7554/elife.89862.1
N/A
0DataRank · unranked
10 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

A highly conserved and globally prevalent cryptic plasmid is among the most numerous mobile genetic elements in the human gut

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.25.534219
N/A
0DataRank · unranked
6 citations

Matthew S. Schechter, Karen Lolans, Madeline L. Sheahan, Iva Veseli, Ryan M. Moore +11 more

Reviewer #2 (Public Review): Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

(2023)10.7554/elife.89862.1.sa1
N/A
0DataRank · unranked
0 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

Reviewer #1 (Public Review): Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

(2023)10.7554/elife.89862.1.sa2
N/A
0DataRank · unranked
0 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess

Nature Microbiology(2024)10.1038/s41564-024-01610-3
N/A
0DataRank · unranked
64 citations

Emily C. Fogarty, A. Murat Eren, Michael Yu

A cryptic plasmid is among the most numerous genetic elements in the human gut

Cell(2024)10.1016/j.cell.2024.01.039
N/A
0DataRank · unranked
62 citations

Matthew S. Schechter, Karen Lolans, Madeline L. Sheahan, Iva Veseli, Ryan M. Moore +13 more

Metabolic independence drives gut microbial colonization and resilience in health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.02.433653
N/A
0DataRank · unranked
34 citations

Jessika Füssel, Iva Veseli, Johanna Zaal DeLongchamp, Marisela Silva, Florian Trigodet +15 more

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

eLife(2025)10.7554/elife.89862.3
N/A
0DataRank · unranked
6 citations

Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson +8 more

High molecular weight DNA extraction strategies for long-read sequencing of complex metagenomes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.03.433801
N/A
0DataRank · unranked
9 citations

Karen Lolans, Emily C. Fogarty, Alon Shaiber, Hilary G. Morrison, Luis B. Barreiro +3 more