Gilbert S. Omenn

Also affiliated with WinnMed, Institute for Systems Biology, InSysBio (Russia), Michigan Medicine, Institut thématique Génétique, génomique et bioinformatique, Mayo Clinic in Florida

ChemistryBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

28.3Author DataRank

Indexed papers

18in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 18 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis

Scientific Data(2020)10.1038/s41597-020-0523-6

Top 4%

5.0DataRank

Top 4%133 citations

Hong Yu, Edison Ong, Yang Wang, Yingtong Liu, Anthony Huffman +9 more

Papers

Driven by 67 papers — median percentile 82. Top paper: “Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma”.

Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma

Cell(2020)10.1016/j.cell.2020.06.013

N/A

9.1DataRank · unranked

837 citations

Shankha Satpathy, Song Cao, Saravana M. Dhanasekaran, Suhas Vasaikar, Karsten Krug +95 more

Proteogenomic characterization of pancreatic ductal adenocarcinoma

Cell(2021)10.1016/j.cell.2021.08.023

N/A

7.9DataRank · unranked

606 citations

Chen Huang, Daniel Cui Zhou, Yingwei Hu, T. Mamie Lih, Sara R. Savage +95 more

A proteogenomic portrait of lung squamous cell carcinoma

Cell(2021)10.1016/j.cell.2021.07.016

N/A

7.2DataRank · unranked

392 citations

Karsten Krug, Pierre M. Jean Beltran, Sara R. Savage, Francesca Petralia, Chandan Kumar‐Sinha +95 more

CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis

Scientific Data(2020)10.1038/s41597-020-0523-6

Top 4%

5.0DataRank

Top 4%133 citations

Hong Yu, Edison Ong, Yang Wang, Yingtong Liu, Anthony Huffman +9 more

A high-stringency blueprint of the human proteome

Nature Communications(2020)10.1038/s41467-020-19045-9

Top 6%

3.9DataRank

Top 6%217 citations

Edouard C. Nice, Eric W. Deutsch, Lydie Lane, Gilbert S. Omenn, Stephen R. Pennington +41 more

Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness

Cancer Cell(2022)10.1016/j.ccell.2022.12.001

N/A

3.6DataRank · unranked

216 citations

T. Mamie Lih, Saravana M. Dhanasekaran, Rahul Mannan, Lijun Chen, Marcin Cieślik +95 more

Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation

Cell(2023)10.1016/j.cell.2023.07.013

N/A

3.5DataRank · unranked

197 citations

Shankara Anand, Yo Akiyama, Tomer M. Yaron, Yizhe Song, Jared L. Johnson +90 more

Proteogenomic data and resources for pan-cancer analysis

Cancer Cell(2023)10.1016/j.ccell.2023.06.009

Top 6%

3.4DataRank

Top 6%241 citations

Yongchao Dou, Felipe da Veiga Leprevost, Yifat Geffen, Anna Calinawan, François Aguet +93 more

To Do No Harm — and the Most Good — with AI in Health Care

NEJM AI(2024)10.1056/aip2400036

N/A

2.4DataRank · unranked

59 citations

Laura Adams, David Blumenthal, Patricia Flatley Brennan, Noah Brown, Atul Janardhan Butte +18 more

Long-term kidney function recovery and mortality after COVID-19-associated acute kidney injury: an international multi-centre observational cohort study

EClinicalMedicine(2022)10.1016/j.eclinm.2022.101724

Top 11%

2.0DataRank

Top 11%79 citations

Bryce W. Q. Tan, Amelia L.M. Tan, Emily Schriver, Alba Gutiérrez‐Sacristán, Priyam Das +89 more

Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin

Cancer Cell(2023)10.1016/j.ccell.2023.07.013

N/A

1.8DataRank · unranked

107 citations

Rita Jui-Hsien Lu, Reyka G. Jayasinghe, Steven M. Foltz, Eduard Porta‐Pardo, Yifat Geffen +95 more

Pan-cancer proteogenomics characterization of tumor immunity

Cell(2024)10.1016/j.cell.2024.01.027

N/A

1.7DataRank · unranked

91 citations

Weiping Ma, Tomer M. Yaron, Francesca Pia Caruso, Nicole Tignor, Joshua M. Wang +95 more

Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data

Journal of the American Medical Informatics Association(2021)10.1093/jamia/ocab018

Top 13%

1.6DataRank

Top 13%52 citations

Hossein Estiri, Griffin M. Weber, Bertrand Moal, Paul Avillach, Chuan Hong +36 more

International electronic health record-derived post-acute sequelae profiles of COVID-19 patients

npj Digital Medicine(2022)10.1038/s41746-022-00623-8

Top 13%

1.6DataRank

Top 13%29 citations

Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia +53 more

The 2022 Report on the Human Proteome from the HUPO Human Proteome Project

Journal of Proteome Research(2022)10.1021/acs.jproteome.2c00498

Top 14%

1.5DataRank

Top 14%60 citations

Lydie Lane, Christopher M. Overall, Charles Pineau, Nicolle H. Packer, Ileana M. Cristea +13 more

Integrative functional genomic analysis of intron retention in human and mouse brain with Alzheimer's disease

Alzheimer s & Dementia(2021)10.1002/alz.12254

Top 15%

1.4DataRank

Top 15%42 citations

Cory C. Funk, Karen N. McFarland, Eric B. Dammer, Mariet Allen, Minerva M. Carrasquillo +15 more

Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project

Journal of Proteome Research(2021)10.1021/acs.jproteome.1c00590

Top 16%

1.3DataRank

Top 16%44 citations

Lydie Lane, Christopher M. Overall, Young‐Ki Paik, Ileana M. Cristea, Fernando J. Corrales +11 more

Proteogenomic insights suggest druggable pathways in endometrial carcinoma

Cancer Cell(2023)10.1016/j.ccell.2023.07.007

N/A

1.2DataRank · unranked

54 citations

Lizabeth Katsnelson, Marina A. Gritsenko, Yingwei Hu, Boris Reva, Runyu Hong +95 more

The 2023 Report on the Proteome from the HUPO Human Proteome Project

Journal of Proteome Research(2024)10.1021/acs.jproteome.3c00591

Top 19%

1.1DataRank

Top 19%28 citations

Lydie Lane, Christopher M. Overall, Cecilia Lindskog, Charles Pineau, Nicolle H. Packer +13 more

Reflections on the HUPO Human Proteome Project, the Flagship Project of the Human Proteome Organization, at 10 Years

Molecular & Cellular Proteomics(2021)10.1016/j.mcpro.2021.100062

Top 19%

1.0DataRank

Top 19%30 citations

Gilbert S. Omenn

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

Journal of Proteome Research(2021)10.1021/acs.jproteome.0c00359

Top 19%

1.0DataRank

Top 19%27 citations

Wei Zheng, Micah Cheng, Gilbert S. Omenn, Peter L. Freddolino, Yang Zhang +1 more

Blinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018–2019 Additions to neXtProt and the CAFA3 Challenge

Journal of Proteome Research(2019)10.1021/acs.jproteome.9b00537

N/A

0.959DataRank · unranked

24 citations

Lydie Lane, Gilbert S. Omenn, Yang Zhang, Chengxin Zhang

Comprehensive proteogenomic characterization of rare kidney tumors

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101547

N/A

0.920DataRank · unranked

46 citations

Lijun Chen, Yi Hsiao, Rahul Mannan, Yuping Zhang, Jie Luo +95 more

Deep learning integrates histopathology and proteogenomics at a pan-cancer level

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101173

N/A

0.843DataRank · unranked

33 citations

Runyu Hong, Elizabeth G. Demicco, Jimin Tan, Rossana Lazcano, André L. Moreira +95 more

Characterization of long COVID temporal sub-phenotypes by distributed representation learning from electronic health record data: a cohort study

EClinicalMedicine(2023)10.1016/j.eclinm.2023.102210

Top 27%

0.745DataRank

Top 27%24 citations

Zachary H. Strasser, Zahra Shakeri Hossein Abad, Jeffrey G. Klann, Kavishwar B. Wagholikar, Rebecca Mesa +93 more

The human eye proteome project

PROTEOMICS(2013)10.1002/pmic.201300255

Top 29%

0.682DataRank

Top 29%9 citations

Gilbert S. Omenn

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology

Journal of Biomedical Semantics(2022)10.1186/s13326-022-00279-z

Top 30%

0.668DataRank

Top 30%24 citations

Hong Yu, Anthony Huffman, Yu Lin, Darren A. Natale, John Beverley +38 more

Validation of a Derived International Patient Severity Algorithm to Support COVID-19 Analytics from Electronic Health Record Data

medRxiv(2020)10.1101/2020.10.13.20201855

Top 30%

0.665DataRank

Top 30%12 citations

Griffin M. Weber, Hossein Estiri, Bertrand Moal, Paul Avillach, Chuan Hong +34 more

The 2024 Report on the Human Proteome from the HUPO Human Proteome Project

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00776

Top 34%

0.585DataRank

Top 34%26 citations

Sandra Orchard, Lydie Lane, Cecilia Lindskog, Charles Pineau, Christopher M. Overall +15 more

Precision proteogenomics reveals pan-cancer impact of germline variants

Cell(2025)10.1016/j.cell.2025.03.026

N/A

0.341DataRank · unranked

8 citations

Nadezhda V. Terekhanova, Kathleen J. Imbach, Karl R. Clauser, Myvizhi Esai Selvan, Isabel Mendizabal +132 more

Continuous sepsis trajectory prediction using tensor-reduced physiological signals

Scientific Reports(2024)10.1038/s41598-024-68901-x

Top 56%

0.293DataRank

Top 56%4 citations

Joshua Pickard, Winston Zhang, Shuyang Cheng, Harm Derksen, Gilbert S. Omenn +4 more

Proteomic-based stemness score measures oncogenic dedifferentiation and enables the identification of druggable targets

Cell Genomics(2025)10.1016/j.xgen.2025.100851

N/A

0.254DataRank · unranked

4 citations

Renan Simões, Emerson de Souza Santos, Elizabeth G. Demicco, Rossana N. Lazcano Segura, Ma Weiping +95 more

A standardized framework for circulating blood proteomics

Nature Genetics(2025)10.1038/s41588-025-02319-7

N/A

0DataRank · unranked

14 citations

Philipp E. Geyer, Yasset Perez-Riverol, Gilbert S. Omenn, Lianhua Dong, Robert Winkler +20 more

Predicting the structural impact of human alternative splicing

Genome biology(2025)10.1186/s13059-025-03744-x

N/A

0DataRank · unranked

3 citations

Chengxin Zhang, Gilbert S. Omenn, Matthew J. O’Meara, Joshua D. Welch, Yuxuan Song

Contributors

Genomic and Personalized Medicine(2013)10.1016/b978-0-12-382227-7.00124-5

N/A

0DataRank · unranked

0 citations

Minhaz Uddin Ahmed, Sun Hee Ahn, R. Rand Allingham, Jude Alsarraj, Matthew L. Anderson +228 more

Impact of COVID-19 non-pharmaceutical interventions on bacterial infections in children: an international electronic health record-based study

BMJ Public Health(2025)10.1136/bmjph-2025-002671

N/A

0DataRank · unranked

0 citations

Alba Gutiérrez‐Sacristán, Simran Makwana, Xiudi Li, Surbhi Bhatnagar, David A. Hanauer +23 more

IsoResolve: predicting splice isoform functions by integrating gene and isoform-level features with domain adaptation

Bioinformatics(2020)10.1093/bioinformatics/btaa829

N/A

0DataRank · unranked

20 citations

Changhuo Yang, Zhimin Zhang, Mengyun Yang, Fang‐Xiang Wu, Gilbert S. Omenn +2 more

Untargeted longitudinal analysis of a wellness cohort identifies markers of metastatic cancer years prior to diagnosis

Scientific Reports(2020)10.1038/s41598-020-73451-z

N/A

0DataRank · unranked

19 citations

Noa Rappaport, Matthew P. Conomos, Gilbert S. Omenn, Jennifer C. Lovejoy, Leroy Hood +2 more

Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project

Journal of Proteome Research(2020)10.1021/acs.jproteome.0c00648

N/A

0DataRank · unranked

10 citations

Ulrike Kusebauch, Magnus Palmblad, Nuno Bandeira, David Shteynberg, Ling-jie He +6 more

Identifying the Zoonotic Origin of SARS-CoV-2 by Modeling the Binding Affinity between the Spike Receptor-Binding Domain and Host ACE2

Journal of Proteome Research(2020)10.1021/acs.jproteome.0c00717

N/A

0DataRank · unranked

35 citations

Chengxin Zhang, Robin Pearce, Gilbert S. Omenn, Yang Zhang, Xiaoqiang Huang

International Comparisons of Harmonized Laboratory Value Trajectories to Predict Severe COVID-19: Leveraging the 4CE Collaborative Across 342 Hospitals and 6 Countries: A Retrospective Cohort Study

medRxiv(2020)10.1101/2020.12.16.20247684

N/A

0DataRank · unranked

19 citations

Chuan Hong, Nathan Palmer, Paul Avillach, Shawn N. Murphy, Alba Gutiérrez‐Sacristán +80 more

Advances and Utility of the Human Plasma Proteome

Journal of Proteome Research(2021)10.1021/acs.jproteome.1c00657

N/A

0DataRank · unranked

251 citations

Gilbert S. Omenn, Zhi Sun, Michal Maes, Maria Pernemalm, Krishnan K. Palaniappan +10 more

DUOX2 variants associate with preclinical disturbances in microbiota-immune homeostasis and increased inflammatory bowel disease risk

Journal of Clinical Investigation(2021)10.1172/jci141676

N/A

0DataRank · unranked

83 citations

Andrew T. Magis, Elisa Sheng, Matthew P. Conomos, Min Zhang, Lea S. Garzotto +15 more

Ethical Principles, Constraints, and Opportunities in Clinical Proteomics

Molecular & Cellular Proteomics(2021)10.1016/j.mcpro.2021.100046

N/A

0DataRank · unranked

62 citations

Peter V. Treit, Philipp E. Geyer, Gilbert S. Omenn, Matthias Mann, Sebastian Porsdam Mann

International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study

Journal of Medical Internet Research(2021)10.2196/31400

N/A

0DataRank · unranked

24 citations

Harrison G. Zhang, Sehi L’Yi, Clara-Lea Bonzel, Chuan Hong, Paul Avillach +64 more

Multinational characterization of neurological phenotypes in patients hospitalized with COVID-19

Scientific Reports(2021)10.1038/s41598-021-99481-9

N/A

0DataRank · unranked

19 citations

Alba Gutiérrez‐Sacristán, Jiyeon Son, Chuan Hong, Andrew M. South, Brett K. Beaulieu-Jones +95 more

Identification of 13 Guanidinobenzoyl- or Aminidinobenzoyl-Containing Drugs to Potentially Inhibit TMPRSS2 for COVID-19 Treatment

International Journal of Molecular Sciences(2021)10.3390/ijms22137060

N/A

0DataRank · unranked

18 citations

Robin Pearce, Gilbert S. Omenn, Yang Zhang, Xiaoqiang Huang

Functional organization of the maternal and paternal human 4D Nucleome

iScience(2021)10.1016/j.isci.2021.103452

N/A

0DataRank · unranked

16 citations

Wenlong Jia, Haiming Chen, Sijia Liu, Scott Ronquist, Can Chen +11 more

International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study (Preprint)

(2021)10.2196/preprints.31400

N/A

0DataRank · unranked

1 citations

Harrison G. Zhang, Sehi L’Yi, Clara-Lea Bonzel, Chuan Hong, Paul Avillach +64 more

Distinguishing Admissions Specifically for COVID-19 From Incidental SARS-CoV-2 Admissions: National Retrospective Electronic Health Record Study

Journal of Medical Internet Research(2022)10.2196/37931

N/A

0DataRank · unranked

57 citations

Zachary H. Strasser, Meghan R. Hutch, Chris J. Kennedy, Jayson S. Marwaha, Michele Morris +16 more

Fast and accurate Ab Initio Protein structure prediction using deep learning potentials

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010539

N/A

0DataRank · unranked

41 citations

Yang Li, Gilbert S. Omenn, Yang Zhang, Robin Pearce

A new framework for host-pathogen interaction research

Frontiers in Immunology(2022)10.3389/fimmu.2022.1066733

N/A

0DataRank · unranked

17 citations

Li Li, Anthony Huffman, John Beverley, Junguk Hur, Eric Merrell +22 more

SurvMaximin: Robust federated approach to transporting survival risk prediction models

Journal of Biomedical Informatics(2022)10.1016/j.jbi.2022.104176

N/A

0DataRank · unranked

31 citations

Harrison G. Zhang, Xin Xiong, Chuan Hong, Griffin M. Weber, Gabriel A. Brat +53 more

TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction

Genomics Proteomics & Bioinformatics(2022)10.1016/j.gpb.2022.03.001

N/A

0DataRank · unranked

11 citations

Chengxin Zhang, Yan Liu, Gilbert S. Omenn, Peter L. Freddolino, Dong‐Jun Yu +2 more

Neoplastic cell enrichment of tumor tissues using coring and laser microdissection for proteomic and genomic analyses of pancreatic ductal adenocarcinoma

Clinical Proteomics(2022)10.1186/s12014-022-09373-x

N/A

0DataRank · unranked

4 citations

Yingwei Hu, Lijun Chen, Michael Schnaubelt, Daniel Cui Zhou, Yize Li +15 more

Distinguishing Admissions Specifically for COVID-19 from Incidental SARS-CoV-2 Admissions: A National EHR Research Consortium Study

medRxiv(2022)10.1101/2022.02.10.22270728

N/A

0DataRank · unranked

8 citations

Zachary H. Strasser, Meghan R. Hutch, Chris J. Kennedy, Jayson S. Marwaha, Michele Morris +16 more

SurvMaximin: Robust Federated Approach to Transporting Survival Risk Prediction Models

medRxiv(2022)10.1101/2022.02.03.22270410

N/A

0DataRank · unranked

3 citations

Harrison G. Zhang, Xin Xiong, Chuan Hong, Griffin M. Weber, Gabriel A. Brat +53 more

A retrospective cohort analysis leveraging augmented intelligence to characterize long COVID in the electronic health record: A precision medicine framework

PLOS Digital Health(2023)10.1371/journal.pdig.0000301

N/A

0DataRank · unranked

39 citations

Arianna Dagliati, Zahra Shakeri Hossein Abad, Jeffrey G. Klann, Kavishwar B. Wagholikar, Rebecca Mesa +11 more

Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record?

Journal of Biomedical Informatics(2023)10.1016/j.jbi.2023.104306

N/A

0DataRank · unranked

29 citations

Emily Getzen, Meghan R. Hutch, Zachary H. Strasser, Alba Gutiérrez‐Sacristán, Trang T. Le +34 more

Detection of Pancreatic Ductal Adenocarcinoma-Associated Proteins in Serum

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100687

N/A

0DataRank · unranked

16 citations

Liwei Cao, Parham Minoo, Gilbert S. Omenn, Ralph H. Hruban, Daniel W. Chan +3 more

De novo protein fold design through sequence-independent fragment assembly simulations

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2208275120

N/A

0DataRank · unranked

15 citations

Xiaoqiang Huang, Gilbert S. Omenn, Yang Zhang, Robin Pearce

Predicting the Structural Impact of Human Alternative Splicing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.21.572928

N/A

0DataRank · unranked

8 citations

Chengxin Zhang, Gilbert S. Omenn, Matthew J. O’Meara, Joshua D. Welch, Yuxuan Song

Leveraging informative missing data to learn about acute respiratory distress syndrome and mortality in long-term hospitalized COVID-19 patients throughout the years of the pandemic

medRxiv(2023)10.1101/2023.12.18.23300181

N/A

0DataRank · unranked

3 citations

Amelia L.M. Tan, Gabriel A. Brat, Gilbert S. Omenn, Zachary H. Strasser, Qi Long +3 more

The Circulating Proteome─Technological Developments, Current Challenges, and Future Trends

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00586

N/A

0DataRank · unranked

50 citations

Daniel Hornburg, Maria Pernemalm, Stefanie M. Hauck, Krishnan K. Palaniappan, Vincent Albrecht +13 more

π-HuB: the proteomic navigator of the human body

Nature(2024)10.1038/s41586-024-08280-5

N/A

0DataRank · unranked

45 citations

Ruedi Aebersold, Mark S. Baker, Xiu‐Wu Bian, Xiaochen Bo, Daniel W. Chan +95 more

AI-Based Computational Methods in Early Drug Discovery and Post Market Drug Assessment: A Survey

IEEE Transactions on Computational Biology and Bioinformatics(2024)10.1109/tcbb.2024.3492708

N/A

0DataRank · unranked

16 citations

Cristian Minoccheri, Emily Wittrup, Richard Wilson, Brian D. Athey, Gilbert S. Omenn +2 more

Neurological diagnoses in hospitalized COVID-19 patients associated with adverse outcomes: A multinational cohort study

PLOS Digital Health(2024)10.1371/journal.pdig.0000484

N/A

0DataRank · unranked

3 citations

Jiyeon Son, Trang T. Le, Chuan Hong, Xuan Wang, Zahra Shakeri Hossein Abad +43 more

Gilbert S. Omenn

Indexed papers

Top data-sharing exemplar

Papers