🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

José Alquicira-Hernández

Broad Institute

ORCID: 0000-0002-9049-7780

Also affiliated with Brigham and Women's Hospital, Harvard University, Garvan Institute of Medical Research

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 10 papers. Top paper: “Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression”.

Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression

Nature Genetics(2021)10.1038/s41588-021-00913-z
N/A
11.2DataRank · unranked
2226 citations

Annique Claringbould, Harm-Jan Westra, Marc Jan Bonder, Patrick Deelen, Biao Zeng +89 more

Programmatic access to bacterial regulatory networks with regutools

Bioinformatics(2020)10.1093/bioinformatics/btaa575
N/A
0.269DataRank · unranked
5 citations

Carmina Barberena-Jonas, Jesús Emiliano Sotelo-Fonseca, José Alquicira-Hernández, Heladia Salgado, Leonardo Collado‐Torres +2 more

DevKidCC allows for robust classification and direct comparisons of kidney organoid datasets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.20.427346
N/A
0DataRank · unranked
9 citations

Sara E. Howden, Jessica M. Vanslambrouck, Aude Dorison, José Alquicira-Hernández, Joseph E. Powell +2 more

DevKidCC allows for robust classification and direct comparisons of kidney organoid datasets

Genome Medicine(2022)10.1186/s13073-022-01023-z
N/A
0DataRank · unranked
45 citations

Sara E. Howden, Jessica M. Vanslambrouck, Aude Dorison, José Alquicira-Hernández, Joseph E. Powell +2 more

Tracking the clonal dynamics of SARS-CoV-2-specific T cells in children and adults with mild/asymptomatic COVID-19

Clinical Immunology(2022)10.1016/j.clim.2022.109209
N/A
0DataRank · unranked
36 citations

Katherine Jackson, Chansavath Phetsouphanh, John Zaunders, José Alquicira-Hernández, Seyhan Yazar +33 more

Clonal dynamics of SARS-CoV-2-specific T cells in children and adults with COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.30.478400
N/A
0DataRank · unranked
2 citations

Katherine Jackson, Chansavath Phetsouphanh, John Zaunders, José Alquicira-Hernández, Seyhan Yazar +33 more

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

Nature Genetics(2023)10.1038/s41588-023-01586-6
N/A
0DataRank · unranked
43 citations

Amber Shen, Saisriram Gurajala, Aparna Nathan, Laurie Rumker, Vitor R. C. Aguiar +95 more

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

medRxiv(2023)10.1101/2023.03.14.23287257
N/A
0DataRank · unranked
10 citations

Amber Shen, Saori Sakaue, Yang Luo, Saisriram Gurajala, Aparna Nathan +23 more

Identifying genetic variants that influence the abundance of cell states in single-cell data

Nature Genetics(2024)10.1038/s41588-024-01909-1
N/A
0DataRank · unranked
18 citations

Saori Sakaue, Yakir Reshef, Joyce B. Kang, Seyhan Yazar, José Alquicira-Hernández +8 more

Programmatic access to bacterial regulatory networks with regutools

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.29.068551
N/A
0DataRank · unranked
0 citations

Carmina Barberena-Jonas, Jesús Emiliano Sotelo-Fonseca, José Alquicira-Hernández, Heladia Salgado, Leonardo Collado‐Torres +2 more