Baowei Fei

Also affiliated with The University of Texas Southwestern Medical Center

Computer ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 68 papers. Top paper: “Hyperspectral and multispectral imaging in digital and computational pathology: a systematic review [Invited]”.

Hyperspectral and multispectral imaging in digital and computational pathology: a systematic review [Invited]

Biomedical Optics Express(2020)10.1364/boe.386338

N/A

0DataRank · unranked

165 citations

Martin Halicek, Himar Fabelo, Gustavo M. Callicó, Baowei Fei, Samuel Ortega

Tumor detection of the thyroid and salivary glands using hyperspectral imaging and deep learning

Biomedical Optics Express(2020)10.1364/boe.381257

N/A

0DataRank · unranked

120 citations

James D. Dormer, James V. Little, Amy Y. Chen, Baowei Fei, Martin Halicek

A novel fully automated MRI-based deep-learning method for classification of 1p/19q co-deletion status in brain gliomas

Neuro-Oncology Advances(2020)10.1093/noajnl/vdaa066

N/A

0DataRank · unranked

44 citations

Bhavya R Shah, Frank Yu, Marco C. Pinho, Sahil Nalawade, Gowtham Krishnan Murugesan +7 more

Information Extraction Techniques in Hyperspectral Imaging Biomedical Applications

Multimedia Information Retrieval(2020)10.5772/intechopen.93960

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0DataRank · unranked

3 citations

Martin Halicek, Himar Fabelo, Eduardo Quevedo, Baowei Fei, Gustavo M. Callicó +1 more

A Novel Fully Automated MRI-Based Deep Learning Method for Classification of 1P/19Q Co-Deletion Status in Brain Gliomas

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.15.204933

N/A

0DataRank · unranked

19 citations

Bhavya Shah, Frank Yu, Marco C. Pinho, Sahil Nalawade, Gowtham Krishnan Murugesan +7 more

Siamese neural networks for the classification of high-dimensional radiomic features

Medical Imaging 2020: Computer-Aided Diagnosis(2020)10.1117/12.2549389

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0DataRank · unranked

6 citations

James D. Dormer, Qinmei Li, Deji Chen, Zhenfeng Zhang, Baowei Fei +1 more

Brain Tumor IDH, 1p/19q, and MGMT Molecular Classification Using MRI-based Deep Learning: Effect of Motion and Motion Correction

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.01.126375

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0DataRank · unranked

2 citations

Fang Yu, Chandan Ganesh Bangalore Yogananda, Gowtham Krishnan Murugesan, Bhavya Shah, Marco C. Pinho +7 more

MRI-BASED DEEP LEARNING METHOD FOR DETERMINING METHYLATION STATUS OF THE O 6 -METHYLGUANINE–DNA METHYLTRANSFERASE PROMOTER OUTPERFORMS TISSUE BASED METHODS IN BRAIN GLIOMAS

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.30.124230

N/A

0DataRank · unranked

0 citations

Bhavya Shah, Sahil Nalawade, Gowtham Krishnan Murugesan, Frank Yu, Marco C. Pinho +7 more

Comprehensive review of surgical microscopes: technology development and medical applications

Journal of Biomedical Optics(2021)10.1117/1.jbo.26.1.010901

N/A

0DataRank · unranked

151 citations

Baowei Fei, Ling Ma

MRI-Based Deep-Learning Method for Determining Glioma MGMT Promoter Methylation Status

American Journal of Neuroradiology(2021)10.3174/ajnr.a7029

N/A

0DataRank · unranked

97 citations

Bhavya Shah, Sahil Nalawade, Gowtham Krishnan Murugesan, Fang Yu, Marco C. Pinho +7 more

Band selection for oxygenation estimation with multispectral/hyperspectral imaging

Biomedical Optics Express(2021)10.1364/boe.441214

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0DataRank · unranked

17 citations

Fabian Isensee, Sebastian Wirkert, Anant Vemuri, Klaus Maier‐Hein, Baowei Fei +2 more

Technical note: The effect of image annotation with minimal manual interaction for semiautomatic prostate segmentation in CT images using fully convolutional neural networks

Medical Physics(2021)10.1002/mp.15404

N/A

0DataRank · unranked

4 citations

James D. Dormer, Martin Halicek, Baowei Fei, Maysam Shahedi

The Human Placenta Project: Funded Projects, Imaging Innovation, and Persistent Gaps

American Journal of Obstetrics and Gynecology(2021)10.1016/j.ajog.2021.11.395

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0DataRank · unranked

1 citations

Meredith J. Kim, N. Quyen, David M. Owen, Baowei Fei, Ananth J. Madhuranthakam +5 more

QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Scores and Benchmarking Results

arXiv (Cornell University)(2021)10.48550/arxiv.2112.10074

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0DataRank · unranked

7 citations

Angelos Filos, Ujjwal Baid, Chiharu Sako, Richard McKinley, Michael Rebsamen +87 more

QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation – Analysis of Ranking Scores and Benchmarking Results

The Journal of Machine Learning for Biomedical Imaging(2022)10.59275/j.melba.2022-354b

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0DataRank · unranked

53 citations

Angelos Filos, Ujjwal Baid, Chiharu Sako, Richard McKinley, Michael Rebsamen +87 more

Automatic detection of head and neck squamous cell carcinoma on histologic slides using hyperspectral microscopic imaging

Journal of Biomedical Optics(2022)10.1117/1.jbo.27.4.046501

N/A

0DataRank · unranked

32 citations

James V. Little, Amy Y. Chen, Larry L. Myers, Baran D. Sumer, Baowei Fei +1 more

Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging

Journal of Biomedical Optics(2022)10.1117/1.jbo.27.5.056502

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0DataRank · unranked

15 citations

Armand Rathgeb, Hasan Mubarak, Minh Tran, Baowei Fei, Ling Ma

Brain tumor IDH, 1p/19q, and MGMT molecular classification using MRI-based deep learning: an initial study on the effect of motion and motion correction

Journal of Medical Imaging(2022)10.1117/1.jmi.9.1.016001

N/A

0DataRank · unranked

6 citations

Fang F. Yu, Chandan Ganesh Bangalore Yogananda, Gowtham K. Murugesan, Bhavya R. Shah, Marco C. Pinho +8 more

Compact and ultracompact spectral imagers: technology and applications in biomedical imaging

Journal of Biomedical Optics(2023)10.1117/1.jbo.28.4.040901

N/A

0DataRank · unranked

52 citations

Baowei Fei, Minh Tran

The human placenta project: Funded studies, imaging technologies, and future directions

Placenta(2023)10.1016/j.placenta.2023.08.067

N/A

0DataRank · unranked

14 citations

Meredith J. Kim, N. Quyen, David M. Owen, Baowei Fei, Diane M. Twickler +2 more

Longitudinal assessment of placental perfusion in normal and hypertensive pregnancies using pseudo-continuous arterial spin–labeled MRI: preliminary experience

European Radiology(2023)10.1007/s00330-023-09945-x

N/A

0DataRank · unranked

5 citations

Yiming Wang, Durga Udayakumar, Yin Xi, N. Quyen, Matthew A. Lewis +6 more

Extended reality for biomedicine

Nature Reviews Methods Primers(2023)10.1038/s43586-023-00208-z

N/A

0DataRank · unranked

10 citations

Sohail S. Hassan, Jiaojiao Wu, Casey R. Koger, René R. Sevag Packard, Feng Shi +3 more

A high-speed hyperspectral laparoscopic imaging system

PubMed(2023)10.1117/12.2653922

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0DataRank · unranked

9 citations

Brett A. Johnson, Jeffrey Gahan, Ling Ma, Baowei Fei, Kelden Pruitt

A video transformer network for thyroid cancer detection on hyperspectral histologic images

PubMed(2023)10.1117/12.2654851

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0DataRank · unranked

8 citations

Ofelia Gomez, Baowei Fei, Minh Tran

An automatic whole-slide hyperspectral imaging microscope

PubMed(2023)10.1117/12.2650815

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0DataRank · unranked

6 citations

Ofelia Gomez, Baowei Fei, Minh Trần

Deep-learning based segmentation of the placenta and uterine cavity on prenatal MR images

PubMed(2023)10.1117/12.2653659

N/A

0DataRank · unranked

4 citations

N. Quyen, Maysam Shahedi, Yin Xi, Matthew A. Lewis, Christina L. Herrera +6 more

Automated polarized hyperspectral imaging (PHSI) for ex-vivo and in-vivo tissue assessment

PubMed(2023)10.1117/12.2651011

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0DataRank · unranked

3 citations

Akhila Srinivas, Abirami Krishnamurthy, Ximing Zhou, Nimit Subhashbhai Shah, Girgis Obaid +2 more

Extended depth of field imaging for mosaic hyperspectral images

PubMed(2023)10.1117/12.2653923

N/A

0DataRank · unranked

3 citations

Ling Ma, Minh Tran, Baowei Fei, Armand Rathgeb

Conditional generative adversarial network (cGAN) for synthesis of digital histologic images from hyperspectral images

PubMed(2023)10.1117/12.2653715

N/A

0DataRank · unranked

3 citations

Jeremy C. Sherey, Doreen N. Palsgrove, Baowei Fei, Ling Ma

An advanced system with advanced user interfaces for image-guided intervention applications

PubMed(2023)10.1117/12.2653952

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0DataRank · unranked

2 citations

Baowei Fei, Patric Bettati

Topography-based feature extraction of the human placenta from prenatal MR images

PubMed(2023)10.1117/12.2653663

N/A

0DataRank · unranked

2 citations

Maysam Shahedi, N. Quyen, Yin Xi, Matthew A. Lewis, Christina L. Herrera +6 more

Polarized hyperspectral microscopic imaging for white blood cells on Wright-stained blood smear slides

PubMed(2023)10.1117/12.2655708

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0DataRank · unranked

1 citations

Hasan Mubarak, Ling Ma, Doreen N. Palsgrove, Samuel Ortega, Gustavo M. Callicó +5 more

Hemoglobin microbubbles and the prediction of different oxygen levels using RF data and deep learning

PubMed(2023)10.1117/12.2655121

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0DataRank · unranked

1 citations

Sugandha Chaudhary, Shashank R. Sirsi, Baowei Fei, Teja Pathour

Corrigendum to: A novel fully automated MRI-based deep-learning method for classification of 1p/19q co-deletion status in brain gliomas

Neuro-Oncology Advances(2023)10.1093/noajnl/vdac187

N/A

0DataRank · unranked

0 citations

Bhavya R Shah, Frank Yu, Marco C. Pinho, Sahil Nalawade, Gowtham Krishnan Murugesan +7 more

Two-Stage Training Framework Using Multicontrast MRI Radiomics for IDH Mutation Status Prediction in Glioma

Radiology Artificial Intelligence(2024)10.1148/ryai.230218

N/A

0DataRank · unranked

16 citations

Chandan Ganesh Bangalore Yogananda, Benjamin Wagner, James M. Holcomb, Divya Reddy, Niloufar Saadat +10 more

Polarized hyperspectral microscopic imaging system for enhancing the visualization of collagen fibers and head and neck squamous cell carcinoma

Journal of Biomedical Optics(2024)10.1117/1.jbo.29.1.016005

N/A

0DataRank · unranked

10 citations

Ling Ma, Hasan Mubarak, Doreen N. Palsgrove, Baran D. Sumer, Amy Y. Chen +2 more

Development and Characterization of Hemoglobin Microbubbles for Acoustic Blood Oxygen Level Dependent Imaging

ACS Sensors(2024)10.1021/acssensors.3c02349

N/A

0DataRank · unranked

5 citations

Nasrin Akter, Teja Pathour, Bahareh Kian Pour, Ghazal Rastegar, A. Haritha Menon +5 more

A high-resolution hyperspectral imaging system for retina imaging

PubMed(2024)10.1117/12.3001647

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0DataRank · unranked

4 citations

Michelle D. Bryarly, Kelden Pruitt, Ling Ma, Baowei Fei, Minh Tran

An ensemble learning method for detection of head and neck squamous cell carcinoma using polarized hyperspectral microscopic imaging

PubMed(2024)10.1117/12.3007869

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0DataRank · unranked

4 citations

Ximing Zhou, Doreen N. Palsgrove, Baran D. Sumer, Amy Y. Chen, Baowei Fei +1 more

Dual-camera laparoscopic imaging with super-resolution reconstruction for intraoperative hyperspectral image guidance

PubMed(2024)10.1117/12.3006573

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0DataRank · unranked

3 citations

Kelden Pruitt, Baowei Fei, Ling Ma

An augmented reality and high-speed optical tracking system for laparoscopic surgery

PubMed(2024)10.1117/12.3008448

N/A

0DataRank · unranked

3 citations

Jeff Young, Patric Bettati, Armand Rathgeb, Kelden Pruitt, Jordan Frimpter +10 more

Nerve detection and visualization using hyperspectral imaging for surgical guidance

PubMed(2024)10.1117/12.3008470

N/A

0DataRank · unranked

2 citations

Michelle D. Bryarly, Ling Ma, Muhammad Saad Yousuf, Theodore J. Price, Baowei Fei +1 more

A dual-camera hyperspectral laparoscopic imaging system

PubMed(2024)10.1117/12.3005893

N/A

0DataRank · unranked

2 citations

Armand Rathgeb, Jeffrey Gahan, Brett A. Johnson, Douglas W. Strand, Baowei Fei +1 more

An augmented reality-guided biopsy system using a high-speed motion tracking and real-time registration platform

PubMed(2024)10.1117/12.3008573

N/A

0DataRank · unranked

2 citations

Jeff Young, Armand Rathgeb, Nati Nawawithan, Jeffrey Gahan, Brett A. Johnson +10 more

Optimization of a real-time LED based spectral imaging system

PubMed(2024)10.1117/12.3005452

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0DataRank · unranked

1 citations

Naeeme Modir, Nati Nawawithan, Minh Tran, Baowei Fei, Kelden Pruitt

Feature extraction of ultrasound radiofrequency data for the classification of the peripheral zone of human prostate

PubMed(2024)10.1117/12.3008643

N/A

0DataRank · unranked

1 citations

Ling Ma, Douglas W. Strand, Jeffrey Gahan, Brett A. Johnson, Shashank R. Sirsi +2 more

A fast and interactive augmented reality system for PET/CT-guided intervention of neuroblastoma

PubMed(2024)10.1117/12.3008663

N/A

0DataRank · unranked

1 citations

Patric Bettati, Jeff Young, Armand Rathgeb, Shashank R. Sirsi, Baowei Fei +1 more

Dense surface reconstruction using a learning-based vSLAM model for laparoscopic surgery

PubMed(2024)10.1117/12.3008768

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0DataRank · unranked

1 citations

Kelden Pruitt, Nati Nawawithan, Brett A. Johnson, Jeffrey Gahan, Baowei Fei +1 more

A hyperspectral surgical microscope with super-resolution reconstruction for intraoperative image guidance

PubMed(2024)10.1117/12.3008789

N/A

0DataRank · unranked

1 citations

Kelden Pruitt, Baowei Fei, Ling Ma

Synthesizing 3D multi-contrast brain tumor MRIs using tumor mask conditioning

PubMed(2024)10.1117/12.3009331

N/A

0DataRank · unranked

1 citations

Chandan Ganesh Bangalore Yogananda, Benjamin Wagner, James M. Holcomb, Divya Reddy, Niloufar Saadat +10 more

Polarized Hyperspectral Microscopic Imaging for Zebrafish

PubMed(2024)10.1117/12.3007294

N/A

0DataRank · unranked

1 citations

Hasan Mubarak, Jaideep Kaur, P.C. Dave P. Dingal, Baowei Fei, Ximing Zhou

GAN-based motion artifact correction of 3D MR volumes using an image-to-image translation algorithm

PubMed(2024)10.1117/12.3007743

N/A

0DataRank · unranked

0 citations

Chandan Ganesh Bangalore Yogananda, Nghi Cong Dung Truong, Ananth J. Madhuranthakam, Joseph A. Maldjian, Baowei Fei +1 more

Towards fair decentralized benchmarking of healthcare AI algorithms with the Federated Tumor Segmentation (FeTS) challenge

Nature Communications(2025)10.1038/s41467-025-60466-1

N/A

0DataRank · unranked

11 citations

Ujjwal Baid, Sarthak Pati, Akis Linardos, Brandon Edwards, Micah Sheller +95 more

Fine‐Tuning Photochemical Immunogenic Cell Death by a Panel of Verteporfin‐Lipid Nanoparticles: A Data‐Driven Approach

Small Science(2025)10.1002/smsc.202500290

N/A

0DataRank · unranked

3 citations

Maxwell Quaye, Siddharth Reddy Soma, Meghana Sree Vadlamudi, Doha Mahmoud, Ashritha Malkoochi +9 more

Volumetric imaging and computation to explore contractile function in zebrafish hearts

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101113

N/A

0DataRank · unranked

1 citations

Riya P. Patel, Milad Almasian, Xinyuan Zhang, Jonathan R. Brewer, Sohail S. Hassan +7 more

Human subject study of a transmission-aided attenuation correction for precision PET neuroimaging

EJNMMI Physics(2025)10.1186/s40658-025-00803-x

N/A

0DataRank · unranked

1 citations

Syed T. Rahman, Mi‐Ae Park, Baowei Fei, Ramsey D. Badawi, S Bowen +1 more

Bridging the clinical gap: Confidence informed IDH prediction in brain gliomas using MRI and deep learning

Neuro-Oncology Advances(2025)10.1093/noajnl/vdaf142

N/A

0DataRank · unranked

2 citations

Nghi Cong Dung Truong, Benjamin Wagner, Yin Xi, Jason Bowerman, Divya D. Reddy +12 more

An automatic processing framework for hyperspectral histologic images and benchmark dataset

PubMed(2025)10.1117/12.3047743

N/A

0DataRank · unranked

2 citations

Amie M. Ha, Ifrah Zainab, Armand Rathgeb, Hasan Mubarak, Baowei Fei +1 more

Retina phantom model for hyperspectral imaging

PubMed(2025)10.1117/12.3048963

N/A

0DataRank · unranked

1 citations

Minh Ha Tran, Arrsh Ali, Baowei Fei, Michelle D. Bryarly

Mitigating data scarcity in the classification of glioma molecular subtypes: the power of generative imaging

PubMed(2025)10.1117/12.3049114

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0DataRank · unranked

1 citations

Chandan Ganesh Bangalore Yogananda, Benjamin Wagner, Niloufar Saadat, James M. Holcomb, Divya Reddy +12 more

Masked image modeling in medical hyperspectral imaging: reconstruction evaluation and downstream tasks

PubMed(2025)10.1117/12.3048802

N/A

0DataRank · unranked

0 citations

Hemanth Pasupuleti, James J. Q. Yu, Weston DeAtley, Baowei Fei, Kelden Pruitt

Novel view synthesis using neural radiance fields for laparoscopic surgery navigation

PubMed(2025)10.1117/12.3048817

N/A

0DataRank · unranked

0 citations

James Yu, Kelden Pruitt, Baowei Fei, Nati Nawawithan

Validation of a handheld polarized hyperspectral imaging probe on intralipid phantom and mouse tissue

PubMed(2025)10.1117/12.3046378

N/A

0DataRank · unranked

0 citations

Ling Ma, Amie M. Ha, Cooper Lane, Baowei Fei, Jeremy C. Sherey

Data harmonization with StyleTransfer-GANs: enhancing non-invasive IDH classification in brain tumors

PubMed(2025)10.1117/12.3049148

N/A

0DataRank · unranked

0 citations

Jason Bowerman, Nghi Cong Dung Truong, Benjamin Wagner, Divya Reddy, James M. Holcomb +11 more

A high-speed hyperspectral imaging system and large-scale hyperspectral dataset for abdominal surgical applications

PubMed(2025)10.1117/12.3048439

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0DataRank · unranked

0 citations

Weston DeAtley, Armand Rathgeb, Brett A. Johnson, Jeffrey Gahan, Baowei Fei +1 more

Optimization of transfer learning of foundation models for hyperspectral histologic imaging

PubMed(2025)10.1117/12.3048965

N/A

0DataRank · unranked

0 citations

Lin Ma, James J. Q. Yu, Baowei Fei, Michael D. Hellman

Harnessing chemically crosslinked microbubble clusters using deep learning for ultrasound contrast imaging

Journal of Medical Imaging(2025)10.1117/1.jmi.12.4.047001

N/A

0DataRank · unranked

0 citations

Ghazal Rastegar, Shashank R. Sirsi, Baowei Fei, Teja Pathour

Categorical and phenotypic image synthetic learning as an alternative to federated learning

Nature Communications(2025)10.1038/s41467-025-64385-z

N/A

0DataRank · unranked

0 citations

Chandan Ganesh Bangalore Yogananda, Benjamin Wagner, James M. Holcomb, Divya D. Reddy, Niloufar Saadat +11 more