Colin J. Worby

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMathematicsMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.267Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Clinical and genomic characterization of Klebsiella pneumoniae infections in Dhaka, Bangladesh

Journal of Global Antimicrobial Resistance(2024)10.1016/j.jgar.2024.12.016

Top 58%

0.267DataRank

Top 58%4 citations

Sushmita Sridhar, Sanchita Kar, Tanbir Habib, Sharmin Akter Mukta, Kasrina Azad +14 more

Papers

Driven by 29 papers — median percentile 42. Top paper: “Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection”.

Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection

Nature Communications(2024)10.1038/s41467-024-53829-7

N/A

0.414DataRank · unranked

9 citations

Timothy J. Straub, Colin J. Worby, Hayden C. Metsky, Andreas Gnirke, Ryan A. Bronson +13 more

Clinical and genomic characterization of Klebsiella pneumoniae infections in Dhaka, Bangladesh

Journal of Global Antimicrobial Resistance(2024)10.1016/j.jgar.2024.12.016

Top 58%

0.267DataRank

Top 58%4 citations

Sushmita Sridhar, Sanchita Kar, Tanbir Habib, Sharmin Akter Mukta, Kasrina Azad +14 more

StrainGE: A toolkit to track and characterize low-abundance strains in complex microbial communities

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.14.431013

N/A

0DataRank · unranked

10 citations

Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber +7 more

Gut-bladder axis syndrome associated with recurrent UTIs in humans

medRxiv(2021)10.1101/2021.11.15.21266268

N/A

0DataRank · unranked

4 citations

Henry L. Schreiber, Timothy J. Straub, Lucas R. van Dijk, Ryan A. Bronson, Benjamin Olson +19 more

Implications of climatic and demographic change for seasonal influenza dynamics and evolution

medRxiv(2021)10.1101/2021.02.11.21251601

N/A

0DataRank · unranked

2 citations

Qiqi Yang, Colin J. Worby, Wenchang Yang, Chadi M. Saad-Roy, Cécile Viboud +5 more

Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.08.471225

N/A

0DataRank · unranked

2 citations

Abigail L. Manson, Bruce J. Walker, Thea Brennan-Krohn, Colin J. Worby, Peijun Ma +27 more

Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women

Nature Microbiology(2022)10.1038/s41564-022-01107-x

N/A

0DataRank · unranked

184 citations

Henry L. Schreiber, Timothy J. Straub, Lucas R. van Dijk, Ryan A. Bronson, Benjamin Olson +20 more

StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities

Genome biology(2022)10.1186/s13059-022-02630-0

N/A

0DataRank · unranked

112 citations

Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber +7 more

Establishing the role of the gut microbiota in susceptibility to recurrent urinary tract infections

Journal of Clinical Investigation(2022)10.1172/jci158497

N/A

0DataRank · unranked

54 citations

Benjamin Olson, Karen Dodson, Ashlee M. Earl, Scott J. Hultgren, Colin J. Worby

Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance

Genome Medicine(2022)10.1186/s13073-022-01040-y

N/A

0DataRank · unranked

44 citations

Abigail L. Manson, Bruce J. Walker, Thea Brennan-Krohn, Colin J. Worby, Peijun Ma +25 more

Drinking water chlorination has minor effects on the intestinal flora and resistomes of Bangladeshi children

Nature Microbiology(2022)10.1038/s41564-022-01101-3

N/A

0DataRank · unranked

33 citations

Val F. Lanza, María Camila Montealegre, Sonia Sultana, Erica R. Fuhrmeister, Colin J. Worby +11 more

Evaluating the relationship between community water and sanitation access and the global burden of antibiotic resistance: an ecological study

The Lancet Microbe(2023)10.1016/s2666-5247(23)00137-4

N/A

0DataRank · unranked

76 citations

Abigail P. Harvey, Maya Nadimpalli, Karin Gallandat, Argaw Ambelu, Benjamin F. Arnold +13 more

Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes

Briefings in Bioinformatics(2023)10.1093/bib/bbad050

N/A

0DataRank · unranked

29 citations

Terrance Shea, Christina A. Cuomo, Bruce J. Walker, Regina C. LaRocque, Abigail L. Manson +3 more

Clinical and Genomic Characterization of a Cohort of Patients With Klebsiella pneumoniae Bloodstream Infection

Clinical Infectious Diseases(2023)10.1093/cid/ciad507

N/A

0DataRank · unranked

28 citations

Sushmita Sridhar, Elizabeth Oliver, Sowmya R. Rao, Damien Slater, Wontae Hwang +12 more

Development of a prediction model for the acquisition of extended spectrum beta-lactam-resistant organisms in U.S. international travellers

Journal of Travel Medicine(2023)10.1093/jtm/taad028

N/A

0DataRank · unranked

13 citations

Colin J. Worby, Melissa Pender, Ben J. Brintz, Edward T. Ryan, Sushmita Sridhar +8 more

Strain tracking with uncertainty quantification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.25.525531

N/A

0DataRank · unranked

0 citations

Colin J. Worby, Sawal Acharya, Lucas R. van Dijk, Daniel Alfonsetti, Zackary Gromko +8 more

Intrinsic Resistance to Colistin in the Genus Hafnia

Journal of Clinical Microbiology(2023)10.1128/jcm.01326-22

N/A

0DataRank · unranked

0 citations

Ryan A. Bronson, Colin J. Worby, Graham McGrath, Emily Hodgkins, Margaret Becker +8 more

High Prevalence of Carbapenem-resistant Klebsiella Pneumoniae in Fecal and Water Samples in Dhaka, Bangladesh

Open Forum Infectious Diseases(2024)10.1093/ofid/ofae612

N/A

0DataRank · unranked

3 citations

Zannat Kawser, Sushmita Sridhar, Sharmin Aktar Mukta, Neamul Hasan, Abu Bakar Siddik +13 more

Dynamics of microbiome and resistome in a poultry burger processing line

Food Research International(2024)10.1016/j.foodres.2024.114842

N/A

0DataRank · unranked

6 citations

Elisa Pagán, Daniel Berdejo, Colin J. Worby, Mark Young, Abigail L. Manson +4 more

Bacterial strain sharing between humans, animals, and the environment among urban households

medRxiv(2024)10.1101/2024.08.05.24311509

N/A

0DataRank · unranked

2 citations

Jenna M. Swarthout, Colin J. Worby, Benard Chieng, John Mboya, Ashlee M. Earl +3 more

Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.29.582780

N/A

0DataRank · unranked

1 citations

Timothy J. Straub, Colin J. Worby, Hayden C. Metsky, Andreas Gnirke, Ryan A. Bronson +13 more

Effects of commonly used antibiotics on children’s developing gut microbiomes and resistomes in peri-urban Lima, Peru

medRxiv(2024)10.1101/2024.12.13.24317790

N/A

0DataRank · unranked

0 citations

Mónica J. Pajuelo, Robert H. Gilman, Amy J. Pickering, Ashlee M. Earl, Colin J. Worby +2 more

Contaminated drinking water facilitates Escherichia coli strain-sharing within households in urban informal settlements

Nature Microbiology(2025)10.1038/s41564-025-01986-w

N/A

0DataRank · unranked

22 citations

Jenna M. Swarthout, Colin J. Worby, Benard Chieng, John Mboya, Ashlee M. Earl +3 more

Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain

Nature Microbiology(2025)10.1038/s41564-025-01983-z

N/A

0DataRank · unranked

5 citations

Colin J. Worby, Sawal Acharya, Lucas R. van Dijk, Daniel Alfonsetti, Zackary Gromko +8 more

Circling in on plasmids: benchmarking plasmid detection and reconstruction tools for short-read data from diverse species

Briefings in Bioinformatics(2025)10.1093/bib/bbaf589

N/A

0DataRank · unranked

5 citations

Célia Souque, Colin J. Worby, Terrance Shea, Nicoletta Commins, Joshua T. Smith +5 more

Role of the gut microbiome in frequent gut colonization with extended-spectrum β lactamase-producing Enterobacterales among Peruvian children

Gut Microbes(2025)10.1080/19490976.2025.2541029

N/A

0DataRank · unranked

3 citations

Neha Sehgal, Luismarcelo Rojas-Salvatierra, Robert H. Gilman, Ashlee M. Earl, Colin J. Worby +4 more

Acquisition of Antibiotic-Resistant Bacteria by U.S. International Travelers

New England Journal of Medicine(2020)10.1056/nejmc1912464

N/A

0DataRank · unranked

34 citations

Sarah E. Turbett, Colin J. Worby, Elizabeth Oliver, Allison Taylor Walker, Maroya Spalding Walters +8 more

Effects of commonly used antibiotics on children’s developing gut microbiomes and resistomes in peri-urban Lima, Peru

Journal of Antimicrobial Chemotherapy(2025)10.1093/jac/dkaf358

N/A

0DataRank · unranked

1 citations

Mónica J. Pajuelo, Robert H. Gilman, Amy J. Pickering, Ashlee M. Earl, Colin J. Worby +2 more

Interpreting pathogen genetic diversity during measles epidemics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.30.926998

N/A

0DataRank · unranked

1 citations

BA Bozick, PA Gastañaduy, Luojun Yang, PA Rota, Bryan T. Grenfell +1 more

Colin J. Worby

Indexed papers

Top data-sharing exemplar

Papers