Reinhard Laubenbacher

MedicineComputer ScienceBiochemistry, Genetics and Molecular BiologyArts and Humanities

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 36 papers. Top paper: “Systems biology of ferroptosis: A modeling approach”.

Systems biology of ferroptosis: A modeling approach

Journal of Theoretical Biology(2020)10.1016/j.jtbi.2020.110222

N/A

0DataRank · unranked

48 citations

Lia Tesfay, Bibbin T. Paul, Frank M. Torti, Reinhard Laubenbacher, Suzy V. Torti +1 more

The Dynamics of Canalizing Boolean Networks.

PubMed(2020)10.1155/2020/3687961

N/A

0DataRank · unranked

13 citations

Gleb Pogudin, William Qin, Reinhard Laubenbacher, Elijah Paul

Agent Based Models of Polymicrobial Biofilms and the Microbiome—A Review

Microorganisms(2021)10.3390/microorganisms9020417

N/A

0DataRank · unranked

28 citations

Linda Archambault, Dhananjai Senthilkumar, Reinhard Laubenbacher, Robert Müller, Anna Dongari‐Bagtzoglou +1 more

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008690

N/A

0DataRank · unranked

23 citations

Jorge Gómez Tejeda Zañudo, David Murrugarra, Austin M. Perry, Anna Dongari‐Bagtzoglou, Reinhard Laubenbacher +3 more

Optimization of Agent-Based Models Through Coarse-Graining

Letters in Biomathematics(2021)10.30707/lib8.1.1647878866.083342

N/A

0DataRank · unranked

2 citations

Robert Müller, Reinhard Laubenbacher, Sherli Koshy-Chenthittayil

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.20.427417

N/A

0DataRank · unranked

2 citations

Jorge Gómez Tejeda Zañudo, David Murrugarra, Austin M. Perry, Anna Dongari‐Bagtzoglou, Reinhard Laubenbacher +3 more

Understanding Lactobacillus paracasei and Streptococcus oralis biofilm interactions through agent-based modeling

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.29.441960

N/A

0DataRank · unranked

1 citations

Sherli Koshy-Chenthittayil, Angela Thompson, Anna Dongari‐Bagtzoglou, Reinhard Laubenbacher, Robert Müller +1 more

Multiscale mechanistic modelling of the host defense in invasive aspergillosis reveals leukocyte activation and iron acquisition as drivers of infection outcome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.08.447590

N/A

0DataRank · unranked

1 citations

Luis Sordo Vieira, Yogesh Scindia, Bandita Adhikari, Matthew Wheeler, Adam Knapp +4 more

SteadyCellPhenotype: A web-based tool for the modeling of biological networks with ternary logic

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.10.454961

N/A

0DataRank · unranked

0 citations

Luis Sordo Vieira, Reinhard Laubenbacher, Julia Chifman, Adam Knapp

Topological data analysis in biomedicine: A review

Journal of Biomedical Informatics(2022)10.1016/j.jbi.2022.104082

N/A

0DataRank · unranked

162 citations

Reinhard Laubenbacher, Yara Skaf

Building digital twins of the human immune system: toward a roadmap

npj Digital Medicine(2022)10.1038/s41746-022-00610-z

N/A

0DataRank · unranked

160 citations

Anna Niarakis, Tomáš Helikar, Gary An, Bruce E. Shapiro, Rahuman S. Malik‐Sheriff +5 more

Computational models in systems biology: standards, dissemination, and best practices

Current Opinion in Biotechnology(2022)10.1016/j.copbio.2022.102702

N/A

0DataRank · unranked

26 citations

Reinhard Laubenbacher, Luis Sordo Vieira

Multi-scale mechanistic modelling of the host defence in invasive aspergillosis reveals leucocyte activation and iron acquisition as drivers of infection outcome

Journal of The Royal Society Interface(2022)10.1098/rsif.2021.0806

N/A

0DataRank · unranked

22 citations

Luis Sordo Vieira, Yogesh Scindia, Bandita Adhikari, Matthew Wheeler, Adam Knapp +4 more

Aspergillus Utilizes Extracellular Heme as an Iron Source During Invasive Pneumonia, Driving Infection Severity

The Journal of Infectious Diseases(2022)10.1093/infdis/jiac079

N/A

0DataRank · unranked

21 citations

A. L. Solomon, Yogesh Scindia, Luis Sordo Vieira, Yana Goddard, Spencer Whitten +6 more

Computational Modeling of Macrophage Iron Sequestration during Host Defense against Aspergillus

mSphere(2022)10.1128/msphere.00074-22

N/A

0DataRank · unranked

9 citations

Yogesh Scindia, Luis Sordo Vieira, Henrique de Assis Lopes Ribeiro, Joseph Masison, Ning Yang +10 more

SteadyCellPhenotype : a web-based tool for the modeling of biological networks with ternary logic

Bioinformatics(2022)10.1093/bioinformatics/btac097

N/A

0DataRank · unranked

4 citations

Luis Sordo Vieira, Reinhard Laubenbacher, Julia Chifman, Adam Knapp

Computational modeling of macrophage iron sequestration during host defense against Aspergillus

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.24.477648

N/A

0DataRank · unranked

0 citations

Yogesh Scindia, Luis Sordo Vieira, Henrique de Assis Lopes Ribeiro, Joseph Masison, Ning Yang +10 more

COVID-19-associated pulmonary aspergillosis in immunocompetent patients: a virtual patient cohort study

Journal of Mathematical Biology(2023)10.1007/s00285-023-01940-6

N/A

0DataRank · unranked

6 citations

Yogesh Scindia, Borna Mehrad, Reinhard Laubenbacher, Henrique AL Ribeiro

Stability of linear Boolean networks

Physica D Nonlinear Phenomena(2023)10.1016/j.physd.2023.133775

N/A

0DataRank · unranked

5 citations

Claus Kadelka, Reinhard Laubenbacher, David Murrugarra, Karthik Chandrasekhar

Corrected and Republished from: “Understanding Lactobacillus paracasei and Streptococcus oralis Biofilm Interactions through Agent-Based Modeling”

mSphere(2023)10.1128/msphere.00656-22

N/A

0DataRank · unranked

4 citations

Sherli Koshy-Chenthittayil, Angela Thompson, Anna Dongari‐Bagtzoglou, Reinhard Laubenbacher, Robert Müller +1 more

Modularity of biological systems: a link between structure and function

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.11.557227

N/A

0DataRank · unranked

2 citations

Matthew T. Wheeler, Alan Veliz‐Cuba, David Murrugarra, Reinhard Laubenbacher, Claus Kadelka

Forum on immune digital twins: a meeting report

arXiv (Cornell University)(2023)10.48550/arxiv.2310.18374

N/A

0DataRank · unranked

1 citations

Fred Adler, Gary An, Filippo Castiglione, Stephen Eubank, Luís L. Fonseca +14 more

Digital twins in medicine

Nature Computational Science(2024)10.1038/s43588-024-00607-6

N/A

0DataRank · unranked

193 citations

Borna Mehrad, Ilya Shmulevich, Natalia A. Trayanova, Reinhard Laubenbacher

Immune digital twins for complex human pathologies: applications, limitations, and challenges

npj Systems Biology and Applications(2024)10.1038/s41540-024-00450-5

N/A

0DataRank · unranked

75 citations

Reinhard Laubenbacher, Gary An, Yaron Ilan, Jasmin Fisher, Åsmund Flobak +42 more

Forum on immune digital twins: a meeting report

npj Systems Biology and Applications(2024)10.1038/s41540-024-00345-5

N/A

0DataRank · unranked

24 citations

Fred Adler, Gary An, Filippo Castiglione, Stephen Eubank, Luís L. Fonseca +14 more

A perfectly imperfect engine: Utilizing the digital twin paradigm in pulmonary hypertension

Pulmonary Circulation(2024)10.1002/pul2.12392

N/A

0DataRank · unranked

5 citations

Helen Moore, Ali Ataya, Ann Pham, Paul A. Corris, Reinhard Laubenbacher +2 more

Modular construction of Boolean networks

Physica D Nonlinear Phenomena(2024)10.1016/j.physd.2024.134278

N/A

0DataRank · unranked

2 citations

Claus Kadelka, Alan Veliz‐Cuba, David Murrugarra, Reinhard Laubenbacher, Matthew Wheeler

NIAID/SMB Workshop on Multiscale Modeling of Infectious and Immune-Mediated Diseases

Bulletin of Mathematical Biology(2024)10.1007/s11538-024-01276-2

N/A

0DataRank · unranked

1 citations

Morgan Craig, Reinhard Laubenbacher, Daniel B. Reeves, Liliana Brown, Reed S. Shabman

Control of Medical Digital Twins with Artificial Neural Networks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.18.585589

N/A

0DataRank · unranked

6 citations

Luís L. Fonseca, Reinhard Laubenbacher, Lucas Böttcher

Personalizing computational models to construct medical digital twins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.31.596692

N/A

0DataRank · unranked

2 citations

Daniel A. Cruz, Borna Mehrad, Reinhard Laubenbacher, Adam Knapp

Control of Medical Digital Twins with Artificial Neural Networks

arXiv (Cornell University)(2024)10.48550/arxiv.2403.13851

N/A

0DataRank · unranked

0 citations

Luís L. Fonseca, Reinhard Laubenbacher, Lucas Böttcher

EFECT: A Method to Quantify the Reproducibility of Stochastic Simulations

arXiv (Cornell University)(2024)10.48550/arxiv.2406.16820

N/A

0DataRank · unranked

0 citations

Matthias König, Luís L. Fonseca, Pathirana, Dilan, Bergmann, Frank T., Grecco, Hernán E. +11 more

Optimal control of agent-based models via surrogate modeling

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012138

N/A

0DataRank · unranked

16 citations

Lucas Böttcher, Borna Mehrad, Reinhard Laubenbacher, Luís L. Fonseca

The role of digital twins in P4 medicine: A paradigm for modern healthcare

npj Digital Medicine(2025)10.1038/s41746-025-02115-x

N/A

0DataRank · unranked

13 citations

Seppo Parkkila, Reinhard Laubenbacher, Arto Mannermaa, Leroy Hood, Olli Yli-Harja +1 more

Control of medical digital twins with artificial neural networks

Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences(2025)10.1098/rsta.2024.0228

N/A

0DataRank · unranked

12 citations

Luís L. Fonseca, Reinhard Laubenbacher, Lucas Böttcher

The heme scavenger hemopexin protects against lung injury during aspergillosis by mitigating release of neutrophil extracellular traps

JCI Insight(2025)10.1172/jci.insight.189151

N/A

0DataRank · unranked

5 citations

Henrique AL Ribeiro, Angelica L. Solomon, Luis Sordo Vieira, Yana Goddard, Nickolas Diodati +5 more