John D. Aitchison

Also affiliated with Infectious Disease Research Institute, University of Washington

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A system-level gene regulatory network model for Plasmodium falciparum

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.10.235317

Top 100%

0DataRank

Top 100%0 citations

Ling Wei, Eliza J. R. Peterson, ML Arrieta-Ortiz, Samuel A. Danziger, Nitin S. Baliga +3 more

Papers

Driven by 46 papers — median percentile 0. Top paper: “ODELAM, rapid sequence-independent detection of drug resistance in isolates of Mycobacterium tuberculosis”.

ODELAM, rapid sequence-independent detection of drug resistance in isolates of Mycobacterium tuberculosis

eLife(2020)10.7554/elife.56613

N/A

0.601DataRank · unranked

9 citations

Magdalena Donczew, Fred D. Mast, Tige R. Rustad, Robert Morrison, Timothy R. Sterling +3 more

Dissecting the Structural Dynamics of the Nuclear Pore Complex

Molecular Cell(2020)10.1016/j.molcel.2020.11.032

N/A

0DataRank · unranked

60 citations

Kelly R. Molloy, Sarah Keegan, Thurston Herricks, Dante Lepore, Mary Munson +7 more

Defining the proteolytic landscape during enterovirus infection

PLoS Pathogens(2020)10.1371/journal.ppat.1008927

N/A

0DataRank · unranked

47 citations

Sebastian Kapell, Nicholas T. Hertz, Xianfang Wu, Kierstin L. Bell, Alison W. Ashbrook +9 more

Peroxisome prognostications: Exploring the birth, life, and death of an organelle

The Journal of Cell Biology(2020)10.1083/jcb.201912100

N/A

0DataRank · unranked

35 citations

Richard A. Rachubinski, John D. Aitchison, Fred D. Mast

Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality

The Journal of Cell Biology(2020)10.1083/jcb.202006159

N/A

0DataRank · unranked

28 citations

Arti T. Navare, Almer M. van der Sloot, Jasmin Coulombe‐Huntington, Michael P. Rout, Nitin S. Baliga +8 more

Viral protein engagement of GBF1 induces host cell vulnerability through synthetic lethality

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.12.336487

N/A

0DataRank · unranked

4 citations

Fred D. Mast, Jean Paul Olivier, Thierry Bertomeu, Maxwell L. Neal, Lindsay N. Carpp +5 more

A system-level gene regulatory network model for Plasmodium falciparum

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.10.235317

Top 100%

0DataRank

Top 100%0 citations

Ling Wei, Eliza J. R. Peterson, ML Arrieta-Ortiz, Samuel A. Danziger, Nitin S. Baliga +3 more

Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape

eLife(2021)10.7554/elife.73027

N/A

0DataRank · unranked

71 citations

Peter C. Fridy, Natalia E. Ketaren, Junjie Wang, Erica Y. Jacobs, Jean Paul Olivier +24 more

Determinants of brain swelling in pediatric and adult cerebral malaria

JCI Insight(2021)10.1172/jci.insight.145823

N/A

0DataRank · unranked

47 citations

Fergal J. Duffy, Selasi Dankwa, Maria Vishnyakova, Megharay Majhi, Lukas Pirpamer +20 more

Phosphorylation-dependent mitotic SUMOylation drives nuclear envelope–chromatin interactions

The Journal of Cell Biology(2021)10.1083/jcb.202103036

N/A

0DataRank · unranked

23 citations

Natasha O. Saik, Ashwini Premashankar, Diego L. Lapetina, John D. Aitchison, Ben Montpetit +2 more

A systems-level gene regulatory network model for Plasmodium falciparum

Nucleic Acids Research(2021)10.1093/nar/gkaa1245

N/A

0DataRank · unranked

3 citations

Ling Wei, Eliza J. R. Peterson, Mario L. Arrieta‐Ortiz, Samuel A. Danziger, Nitin S. Baliga +3 more

Autophagy as a Mechanism for Adaptive Prediction-Mediated Emergence of Drug Resistance

Frontiers in Microbiology(2021)10.3389/fmicb.2021.712631

N/A

0DataRank · unranked

2 citations

John D. Aitchison, Nitin S. Baliga, Nivedita Nivedita

Nanobody Repertoires for Exposing Vulnerabilities of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.08.438911

N/A

0DataRank · unranked

10 citations

Peter C. Fridy, Natalia E. Ketaren, Junjie Wang, Erica Y. Jacobs, Jean Paul Olivier +23 more

Autophagy as a mechanism for adaptive prediction-mediated emergence of drug resistance

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.02.429461

N/A

0DataRank · unranked

0 citations

John D. Aitchison, Nitin S. Baliga, Nivedita Nivedita

Phosphorylation-dependent mitotic SUMOylation drives nuclear envelope-chromatin interactions

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.24.436817

N/A

0DataRank · unranked

1 citations

Natasha O. Saik, Ashwini Premashankar, Diego L. Lapetina, John D. Aitchison, Ben Montpetit +2 more

Preimmunization correlates of protection shared across malaria vaccine trials in adults

medRxiv(2021)10.1101/2021.08.13.21262031

N/A

0DataRank · unranked

0 citations

Fergal J. Duffy, Ying Du, John D. Aitchison, Kenneth Stuart, Maxwell L. Neal

Dengue activates mTORC2 signaling to counteract apoptosis and maximize viral replication

Frontiers in Cellular and Infection Microbiology(2022)10.3389/fcimb.2022.979996

N/A

0DataRank · unranked

20 citations

Fred D. Mast, Jean Paul Olivier, Natasha M. Bourgeois, Alexis Kaushansky, John D. Aitchison +1 more

Preimmunization correlates of protection shared across malaria vaccine trials in adults

npj Vaccines(2022)10.1038/s41541-021-00425-1

N/A

0DataRank · unranked

11 citations

Fergal J. Duffy, Ying Du, John D. Aitchison, Kenneth Stuart, Maxwell L. Neal

Viral protein engagement of GBF1 induces host cell vulnerability through synthetic lethality

The Journal of Cell Biology(2022)10.1083/jcb.202011050

N/A

0DataRank · unranked

11 citations

Fred D. Mast, Jean Paul Olivier, Thierry Bertomeu, Maxwell L. Neal, Lindsay N. Carpp +5 more

Longitudinal immune profiling after radiation-attenuated sporozoite vaccination reveals coordinated immune processes correlated with malaria protection

medRxiv(2022)10.1101/2022.09.12.22279869

N/A

0DataRank · unranked

3 citations

Nina Hertoghs, Ying Du, Maxwell L. Neal, Damian A. Oyong, Suzanne M. McDermott +9 more

The nucleoporin Nup170 mediates subtelomeric gene silencing through the Ctf18-RFC complex and PCNA

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.17.496627

N/A

0DataRank · unranked

0 citations

Maxwell L. Neal, Song Li, Arti T. Navare, Fred D. Mast, Michael P. Rout +2 more

Distinct immune responses associated with vaccination status and protection outcomes after malaria challenge

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.09.519706

N/A

0DataRank · unranked

0 citations

Fergal J. Duffy, Maxwell L. Neal, Ying Du, Jason Carnes, Katharine V. Schwedhelm +10 more

Expanding and improving nanobody repertoires using a yeast display method: Targeting SARS-CoV-2

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.102954

N/A

0DataRank · unranked

23 citations

Peter C. Fridy, Natalia E. Ketaren, Fred D. Mast, Song Li, Jean Paul Olivier +5 more

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin

The Journal of Cell Biology(2023)10.1083/jcb.202207060

N/A

0DataRank · unranked

23 citations

Maxwell L. Neal, Song Li, Arti T. Navare, Trevor van Eeuwen, Richard W. Wozniak +4 more

SUMOylation at the inner nuclear membrane facilitates nuclear envelope biogenesis during mitosis

The Journal of Cell Biology(2023)10.1083/jcb.202208137

N/A

0DataRank · unranked

17 citations

Christopher Ptak, Saif Rehman, John D. Aitchison, Ben Montpetit, Richard W. Wozniak +1 more

Nanobody repertoire generated against the spike protein of ancestral SARS-CoV-2 remains efficacious against the rapidly evolving virus

eLife(2023)10.7554/elife.89423

N/A

0DataRank · unranked

2 citations

Fred D. Mast, Peter C. Fridy, Jean Paul Olivier, Tanmoy Sanyal, Andrej Săli +4 more

Nanobody repertoire generated against the spike protein of ancestral SARS-CoV-2 remains efficacious against the rapidly evolving virus

(2023)10.7554/elife.89423.1

N/A

0DataRank · unranked

2 citations

Fred D. Mast, Peter C. Fridy, Jean Paul Olivier, Tanmoy Sanyal, Andrej Săli +4 more

Nanobody repertoire generated against the spike protein of ancestral SARS-CoV-2 remains efficacious against the rapidly evolving virus

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.14.549041

N/A

0DataRank · unranked

1 citations

Fred D. Mast, Peter C. Fridy, Jean Paul Olivier, Tanmoy Sanyal, Andrej Săli +4 more

Predicting host-based, synthetic lethal antiviral targets from omics data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.15.553430

N/A

0DataRank · unranked

0 citations

M J Neal, Arti T. Navare, Fred D. Mast, John D. Aitchison, Jeannette P. Staheli

SARS-CoV-2 Orf6 is positioned in the nuclear pore complex by Rae1 to inhibit nucleocytoplasmic transport

Molecular Biology of the Cell(2024)10.1091/mbc.e23-10-0386

N/A

0DataRank · unranked

10 citations

Ke Zhang, Nicole Love, Fred D. Mast, Xue Liu, Mohamed Elaish +5 more

Automated, image-based quantification of peroxisome characteristics with perox-per-cell

Bioinformatics(2024)10.1093/bioinformatics/btae442

N/A

0DataRank · unranked

7 citations

Nandini Shukla, Fred D. Mast, Jean‐Claude Farré, Therese M. Pacio, Katelyn E. Raney-Plourde +4 more

Nanobody repertoire generated against the spike protein of ancestral SARS-CoV-2 remains efficacious against the rapidly evolving virus

eLife(2024)10.7554/elife.89423.3

N/A

0DataRank · unranked

5 citations

Fred D. Mast, Peter C. Fridy, Jean Paul Olivier, Tanmoy Sanyal, Andrej Săli +4 more

Predicting host-based, synthetic lethal antiviral targets from omics data

NAR Molecular Medicine(2024)10.1093/narmme/ugad001

N/A

0DataRank · unranked

4 citations

Maxwell L. Neal, Arti T. Navare, Fred D. Mast, John D. Aitchison, Jeannette P. Staheli

Systems-level reconstruction of kinase phosphosignaling networks regulating endothelial barrier integrity using temporal data

npj Systems Biology and Applications(2024)10.1038/s41540-024-00468-9

N/A

0DataRank · unranked

1 citations

John D. Aitchison, Alexis Kaushansky, Fred D. Mast, Ling Wei

CD4-mediated immunity shapes neutrophil-driven tuberculous pathology

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.12.589315

N/A

0DataRank · unranked

9 citations

Josepha Klas, Kimberly A. Foster, Sara Cohen, Courtney R. Plumlee, Fergal J. Duffy +10 more

A multivariate cell-based assay for blood-based diagnostics enhances lung cancer risk stratification

medRxiv(2024)10.1101/2024.11.04.24316585

N/A

0DataRank · unranked

2 citations

Fergal J. Duffy, Mark D. D’Ascenzo, Leslie R. Miller, Yijun Qi, G. Adam Whitney +8 more

DeleteomeTools: Utilizing a compendium of yeast deletion strain transcriptomes to identify co-functional genes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.05.578946

N/A

0DataRank · unranked

0 citations

Sanjeev Kumar Choudhry, John D. Aitchison, Maxwell L. Neal

Automated, image-based quantification of peroxisome characteristics with perox-per-cell

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.08.588597

N/A

0DataRank · unranked

0 citations

Nandini Shukla, Fred D. Mast, Jean‐Claude Farré, Therese M. Pacio, Katelyn E. Raney-Plourde +4 more

Systems-level reconstruction of kinase phosphosignaling networks regulating endothelial barrier integrity using temporal data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.01.606198

N/A

0DataRank · unranked

0 citations

John D. Aitchison, Alexis Kaushansky, Fred D. Mast, Ling Wei

APOE Protects Against Severe Infection with Mycobacterium tuberculosis by Restraining Production of Neutrophil Extracellular Traps

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.04.616580

N/A

0DataRank · unranked

0 citations

Dat Mai, Ana N. Jahn, Tara A. Murray, John D. Aitchison, Benjamin H. Gern +5 more

Early and opposing neutrophil and CD4 T cell responses shape pulmonary tuberculosis pathology

The Journal of Experimental Medicine(2025)10.1084/jem.20250161

N/A

0DataRank · unranked

18 citations

Josepha Klas, Kimberly A. Foster, Molly E. Kanagy, S. B. Cohen, Courtney R. Plumlee +13 more

Preclinical development of a replication-competent vesicular stomatitis virus-based Lassa virus vaccine candidate advanced into human clinical trials

EBioMedicine(2025)10.1016/j.ebiom.2025.105647

N/A

0DataRank · unranked

10 citations

Gavin Morrow, Maoli Yuan, Thomas S. Postler, Maxwell L. Neal, Robert W. Cross +33 more

Exploiting host kinases to combat dengue virus infection and disease

Antiviral Research(2025)10.1016/j.antiviral.2025.106172

N/A

0DataRank · unranked

6 citations

Ling Wei, Alexis Kaushansky, John D. Aitchison, Natasha M. Bourgeois

Reevaluating the roles of PPARs and nuclear receptors in human peroxisome biology

The Journal of Cell Biology(2025)10.1083/jcb.202506162

N/A

0DataRank · unranked

1 citations

Richard A. Rachubinski, John D. Aitchison, Fred D. Mast

Ultra-low Dose Aerosol Infection of Mice with Mycobacterium tuberculosis More Closely Models Human Tuberculosis

Cell Host & Microbe(2020)10.1016/j.chom.2020.10.003

N/A

0DataRank · unranked

138 citations

Fergal J. Duffy, Benjamin H. Gern, Jared L. Delahaye, Sara Cohen, Caleb Stoltzfus +11 more

DeleteomeTools: utilizing a compendium of yeast deletion strain transcriptomes to identify co-functional genes

NAR Genomics and Bioinformatics(2025)10.1093/nargab/lqaf008

N/A

0DataRank · unranked

0 citations

Sanjeev Kumar Choudhry, John D. Aitchison, Maxwell L. Neal

John D. Aitchison

Indexed papers

Top data-sharing exemplar

Papers