Stephen H. Hughes

Czech Academy of Sciences, Institute of Geophysics

Also affiliated with Frederick National Laboratory for Cancer Research, National Cancer Institute, Center for Cancer Research

Immunology and MicrobiologyMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 24 papers. Top paper: “HPV oncogenes expressed from only one of multiple integrated HPV DNA copies drive clonal cell expansion in cervical cancer”.

HPV oncogenes expressed from only one of multiple integrated HPV DNA copies drive clonal cell expansion in cervical cancer

mBio(2024)10.1128/mbio.00729-24

N/A

0.974DataRank · unranked

39 citations

Vladimır Majerčiak, Alexei Lobanov, Sameer Mirza, Vimla Band, Haibin Liu +5 more

Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants

Science Advances(2023)10.1126/sciadv.adg5953

N/A

0.843DataRank · unranked

38 citations

Dario Oliveira Passos, Zelin Shan, Steven J. Smith, Qinfang Sun, Avik Biswas +14 more

Comparative Analyses of Antiviral Potencies of Second-Generation Integrase Strand Transfer Inhibitors (INSTIs) and the Developmental Compound 4d Against a Panel of Integrase Quadruple Mutants

Viruses(2025)10.3390/v17010121

N/A

0.165DataRank · unranked

2 citations

Xue Zhi Zhao, Stephen H. Hughes, Terrence R. Burke, Steven J. Smith

HIV-1 Integrase Inhibitors That Are Active against Drug-Resistant Integrase Mutants

Antimicrobial Agents and Chemotherapy(2020)10.1128/aac.00611-20

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0DataRank · unranked

32 citations

Xue Zhi Zhao, Dario Oliveira Passos, Dmitry Lyumkis, Terrence R. Burke, Stephen H. Hughes +1 more

Integration in or Near Oncogenes Plays Only a Minor Role in Determining the in Vivo Distribution of HIV Integration Sites Before or During Suppressive Antiretroviral Therapy

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.25.397653

N/A

0DataRank · unranked

0 citations

Michael J. Bale, Daria Wells, Shuang Guo, Brian T. Luke, Jennifer M. Zerbato +9 more

Crystal Structure of a Retroviral Polyprotein: Prototype Foamy Virus Protease-Reverse Transcriptase (PR-RT)

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.23.395087

N/A

0DataRank · unranked

0 citations

Steve Tuske, Kalyan Das, Francesc X. Ruiz, Joseph D. Bauman, Paul L. Boyer +4 more

Reverse-transcribed SARS-CoV-2 RNA can integrate into the genome of cultured human cells and can be expressed in patient-derived tissues

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2105968118

N/A

0DataRank · unranked

301 citations

Alexsia Richards, M. Inmaculada Barrasa, Stephen H. Hughes, Richard A. Young, Rudolf Jaenisch +1 more

Integrase Strand Transfer Inhibitors Are Effective Anti-HIV Drugs

Viruses(2021)10.3390/v13020205

N/A

0DataRank · unranked

104 citations

Xue Zhi Zhao, Dario Oliveira Passos, Dmitry Lyumkis, Terrence R. Burke, Stephen H. Hughes +1 more

Integration in oncogenes plays only a minor role in determining the in vivo distribution of HIV integration sites before or during suppressive antiretroviral therapy

PLoS Pathogens(2021)10.1371/journal.ppat.1009141

N/A

0DataRank · unranked

67 citations

Michael J. Bale, Daria Wells, Shuang Guo, Brian T. Luke, Jennifer M. Zerbato +9 more

Mouse papillomavirus type 1 (MmuPV1) DNA is frequently integrated in benign tumors by microhomology-mediated end-joining

PLoS Pathogens(2021)10.1371/journal.ppat.1009812

N/A

0DataRank · unranked

27 citations

Vladimır Majerčiak, Xiangyang Xue, Aayushi Uberoi, Alexei Lobanov, Xiongfong Chen +5 more

Structural basis for the inhibition of HTLV-1 integration inferred from cryo-EM deltaretroviral intasome structures

Nature Communications(2021)10.1038/s41467-021-25284-1

N/A

0DataRank · unranked

20 citations

Teresa Vanzo, Xue Zhi Zhao, Steven J. Smith, Allison Ballandras-Colas, Nora Cronin +6 more

Crystal Structure of a Retroviral Polyprotein: Prototype Foamy Virus Protease-Reverse Transcriptase (PR-RT)

Viruses(2021)10.3390/v13081495

N/A

0DataRank · unranked

6 citations

Steve Tuske, Kalyan Das, Francesc X. Ruiz, Joseph D. Bauman, Paul L. Boyer +4 more

HIV-1 viremia not suppressible by antiretroviral therapy can originate from large T cell clones producing infectious virus

Journal of Clinical Investigation(2020)10.1172/jci138099

N/A

0DataRank · unranked

150 citations

Kevin W. Joseph, Leah D. Brandt, Shuang Guo, Michele D. Sobolewski, Jana L. Jacobs +14 more

A reference human induced pluripotent stem cell line for large-scale collaborative studies

Cell stem cell(2022)10.1016/j.stem.2022.11.004

N/A

0DataRank · unranked

307 citations

Andrian Yang, Erika Lara, Justin A. McDonough, Cornelis Blauwendraat, Lirong Peng +90 more

HIV infected CD4+ T cell clones are more stable than uninfected clones during long-term antiretroviral therapy

PLoS Pathogens(2022)10.1371/journal.ppat.1010726

N/A

0DataRank · unranked

17 citations

Brian T. Luke, Amy R. Henry, Samuel Darko, Leah D. Brandt, Ling Su +10 more

Mechanisms of HIV-1 Integrase Resistance to Dolutegravir and Potent Inhibition of Drug Resistant Variants

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.04.519057

N/A

0DataRank · unranked

3 citations

Dario Oliveira Passos, Zelin Shan, Steven J. Smith, Qinfang Sun, Avik Biswas +12 more

The largest HIV-1-infected T cell clones in children on long-term combination antiretroviral therapy contain solo LTRs

mBio(2023)10.1128/mbio.01116-23

N/A

0DataRank · unranked

13 citations

Dimiter Demirov, Carli Gordijn, Mary Grace Katusiime, Michael J. Bale, Xiaolin Wu +7 more

LINE1-Mediated Reverse Transcription and Genomic Integration of SARS-CoV-2 mRNA Detected in Virus-Infected but Not in Viral mRNA-Transfected Cells

Viruses(2023)10.3390/v15030629

N/A

0DataRank · unranked

16 citations

Punam Bisht, Anthony Flamier, M. Inmaculada Barrasa, Max Friesen, Alexsia Richards +3 more

A Practical Approach to Bicyclic Carbamoyl Pyridones with Application to the Synthesis of HIV-1 Integrase Strand Transfer Inhibitors

Molecules(2023)10.3390/molecules28031428

N/A

0DataRank · unranked

5 citations

Steven J. Smith, Stephen H. Hughes, Xue Zhi Zhao, Terrence R. Burke, Pankaj S. Mahajan

LINE1-mediated reverse transcription and genomic integration of SARS-CoV-2 mRNA detected in virus-infected but not in viral mRNA-transfected cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.10.527906

N/A

0DataRank · unranked

6 citations

Punam Bisht, Anthony Flamier, M. Inmaculada Barrasa, Alexsia Richards, Stephen H. Hughes +2 more

N-Substituted Bicyclic Carbamoyl Pyridones: Integrase Strand Transfer Inhibitors that Potently Inhibit Drug-Resistant HIV-1 Integrase Mutants

ACS Infectious Diseases(2024)10.1021/acsinfecdis.3c00525

N/A

0DataRank · unranked

4 citations

Steven J. Smith, Min Li, Robert Craigie, Stephen H. Hughes, Xue Zhi Zhao +2 more

A reference induced pluripotent stem cell line for large-scale collaborative studies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.15.472643

N/A

0DataRank · unranked

14 citations

Andrian Yang, Erika Lara, Justin A. McDonough, Cornelis Blauwendraat, Lirong Peng +90 more

Structural basis for strand-transfer inhibitor binding to HIV intasomes

Science(2020)10.1126/science.aay8015

N/A

0DataRank · unranked

111 citations

Min Li, I.K. Jozwik, Xue Zhi Zhao, Diogo Santos‐Martins, Renbin Yang +8 more

An analytical pipeline for identifying and mapping the integration sites of HIV and other retroviruses

BMC Genomics(2020)10.1186/s12864-020-6647-4

N/A

0DataRank · unranked

51 citations

Shuang Guo, Wei Shao, Michael J. Bale, John M. Coffin, Stephen H. Hughes +2 more