D.A. Keedy

Duke University

ChemistryMaterials ScienceBiochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.534Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An expanded trove of fragment-bound structures for the allosteric enzyme PTP1B from computational reanalysis of large-scale crystallographic data

Structure(2024)10.1016/j.str.2024.05.010

Top 36%

0.534DataRank

Top 36%15 citations

Helen M. Ginn, D.A. Keedy, Tamar Mehlman

Papers

Driven by 29 papers — median percentile 0. Top paper: “MolProbity: all-atom structure validation for macromolecular crystallography”.

MolProbity: all-atom structure validation for macromolecular crystallography

Acta Crystallographica Section D Biological Crystallography(2009)10.1107/s0907444909042073

N/A

1.4DataRank · unranked

14539 citations

W. Bryan Arendall, Jeffrey J. Headd, Daniel A. Keedy, Robert M. Immormino, Gary J. Kapral +7 more

An expanded trove of fragment-bound structures for the allosteric enzyme PTP1B from computational reanalysis of large-scale crystallographic data

Structure(2024)10.1016/j.str.2024.05.010

Top 36%

0.534DataRank

Top 36%15 citations

Helen M. Ginn, D.A. Keedy, Tamar Mehlman

The temperature-dependent conformational ensemble of SARS-CoV-2 main protease (M pro )

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.03.437411

N/A

0DataRank · unranked

19 citations

Blake T. Riley, D. Kumaran, Babak Andi, Martin R. Fuchs, Seán McSweeney +2 more

The temperature-dependent conformational ensemble of SARS-CoV-2 main protease (Mpro)

IUCrJ(2022)10.1107/s2052252522007497

N/A

0DataRank · unranked

59 citations

Blake T. Riley, D. Kumaran, Babak Andi, Martin R. Fuchs, Seán McSweeney +2 more

Room-temperature serial synchrotron crystallography of the human phosphatase PTP1B

Acta Crystallographica Section F Structural Biology Communications(2022)10.1107/s2053230x22011645

N/A

0DataRank · unranked

16 citations

Ali Ebrahim, D.A. Keedy, Shivani Sharma

Room-temperature serial synchrotron crystallography of apo PTP1B

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.28.501725

N/A

0DataRank · unranked

0 citations

Ali Ebrahim, D.A. Keedy, Shivani Sharma

Room-temperature crystallography reveals altered binding of small-molecule fragments to PTP1B

eLife(2023)10.7554/elife.84632

N/A

0DataRank · unranked

72 citations

J.T. Biel, Syeda Maryam Azeem, Elliot R Nelson, Sakib Hossain, Louise Dunnett +8 more

Automated multiconformer model building for X-ray crystallography and cryo-EM

eLife(2023)10.7554/elife.90606

N/A

0DataRank · unranked

32 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Daniel W. Hogan +5 more

Uncovering Protein Ensembles: Automated Multiconformer Model Building for X-ray Crystallography and Cryo-EM

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546963

N/A

0DataRank · unranked

13 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Jessica Flowers +5 more

Pushed to extremes: distinct effects of high temperature vs. pressure on the structure of an atypical phosphatase

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.02.538097

N/A

0DataRank · unranked

2 citations

Ali Ebrahim, Blake T. Riley, Minyoung Kim, Qingqiu Huang, Aaron D. Finke +2 more

Native dynamics and allosteric responses in PTP1B probed by high-resolution HDX-MS

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548582

N/A

0DataRank · unranked

1 citations

Rinat R. Abzalimov, D.A. Keedy, Virgil A. Woods

Uncovering Protein Ensembles: Automated Multiconformer Model Building for X-ray Crystallography and Cryo-EM

(2023)10.7554/elife.90606.1

N/A

0DataRank · unranked

1 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Daniel W. Hogan +4 more

Structure-Based Experimental Datasets for Benchmarking of Protein Simulation Force Fields

PubMed(2023)10.5281/zenodo.7697462

Top 100%

0DataRank

Top 100%0 citations

David A. Case, Julian C.-H. Chen, Lillian T. Chong, D.A. Keedy, Kresten Lindorff‐Larsen +9 more

High-resolution double vision of the archetypal protein tyrosine phosphatase

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.12.557361

N/A

0DataRank · unranked

0 citations

Tamar Mehlman, Reddy Sudheer Sagabala, Benoît Boivin, D.A. Keedy, Shivani Sharma

Native dynamics and allosteric responses in PTP1B probed by high‐resolution HDX‐MS

Protein Science(2024)10.1002/pro.5024

N/A

0DataRank · unranked

24 citations

Rinat R. Abzalimov, D.A. Keedy, Virgil A. Woods

Automated multiconformer model building for X-ray crystallography and cryo-EM

eLife(2024)10.7554/elife.90606.3

N/A

0DataRank · unranked

17 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Daniel W. Hogan +5 more

Pushed to extremes: distinct effects of high temperature versus pressure on the structure of STEP

Communications Biology(2024)10.1038/s42003-023-05609-0

N/A

0DataRank · unranked

18 citations

Ali Ebrahim, Blake T. Riley, Minyoung Kim, Qingqiu Huang, Aaron D. Finke +2 more

Allosteric regulation of the tyrosine phosphatase PTP1B by a protein–protein interaction

Protein Science(2024)10.1002/pro.70016

N/A

0DataRank · unranked

9 citations

Virgil A. Woods, Yunyao Xu, Anne E. van Vlimmeren, Andrew C. Johns, Marko Jovanovic +4 more

Structures of human PTP1B variants reveal allosteric sites to target for weight loss therapy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.05.603709

N/A

0DataRank · unranked

7 citations

Virgil A. Woods, Ali Ebrahim, Katherine Lawler, Rebecca Bounds, N Singh +10 more

An expanded view of ligandability in the allosteric enzyme PTP1B from computational reanalysis of large-scale crystallographic data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.05.574428

N/A

0DataRank · unranked

1 citations

Helen M. Ginn, D.A. Keedy, Tamar Mehlman

Uncovering Protein Ensembles: Automated Multiconformer Model Building for X- ray Crystallography and Cryo-EM

eLife(2024)10.7554/elife.90606.2

N/A

0DataRank · unranked

0 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Jessica Flowers +5 more

Allosteric regulation of the tyrosine phosphatase PTP1B by a protein-protein interaction

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.16.603632

N/A

0DataRank · unranked

0 citations

Virgil A. Woods, Yunyao Xu, Anne E. van Vlimmeren, Andrew C. Johns, Marko Jovanovic +4 more

Author response: Uncovering Protein Ensembles: Automated Multiconformer Model Building for X- ray Crystallography and Cryo-EM

(2024)10.7554/elife.90606.2.sa4

N/A

0DataRank · unranked

0 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Jessica Flowers +5 more

Fragment Screening Identifies Novel Allosteric Binders and Binding Sites in the VHR (DUSP3) Phosphatase

ACS Omega(2025)10.1021/acsomega.4c10321

N/A

0DataRank · unranked

8 citations

Marek R. Baranowski, Alexander E. Aleshin, Eta A. Isiorho, Lester J. Lambert, Laurent J. S. De Backer +9 more

Orchestrating function: Concerted dynamics, allostery, and catalysis in protein tyrosine phosphatases

Current Opinion in Structural Biology(2025)10.1016/j.sbi.2025.103125

N/A

0DataRank · unranked

2 citations

Shivani Sharma, Alexis M. Lemberikman, D.A. Keedy, Virgil A. Woods

Mapping allosteric rewiring in related protein structures from collections of crystallographic multiconformer models

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.23.655529

N/A

0DataRank · unranked

3 citations

Shivani Sharma, Blake T. Riley, Shakhriyor Djuraev, Y.L.K. Tan, Minyoung Kim +3 more

Structures of human protein tyrosine phosphatase variants reveal targetable allosteric sites

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110852

N/A

0DataRank · unranked

0 citations

Virgil A. Woods, Ali Ebrahim, Katherine Lawler, Rebecca Bounds, Dinesh S. Shah +11 more

Supplementary materials for RINFAIRE network analysis of qFit multiconformer models for PTP enzymes

Zenodo (CERN European Organization for Nuclear Research)(2025)10.5281/zenodo.18689236

Top 100%

0DataRank

Top 100%0 citations

Shivani Sharma, Blake Riley, Shakhriyor Djuraev, Y.L.K. Tan, Minyoung Kim +3 more

qFit 3: Protein and ligand multiconformer modeling for X-ray crystallographic and single-particle cryo-EM density maps

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.03.280222

N/A

0DataRank · unranked

10 citations

Stephanie A. Wankowicz, Saulo H. P. de Oliveira, Gydo C. P. van Zundert, Daniel W. Hogan, James S. Fraser +3 more

D.A. Keedy

Indexed papers

Top data-sharing exemplar

Papers