🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Fairlie Reese

University of California, Irvine

ORCID: 0000-0002-9240-0102

Also affiliated with Barcelona Supercomputing Center, UC Irvine Health, Universitat Politècnica de Catalunya

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
7.3Author DataRank

Indexed papers

7in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3
Top 8%
2.8DataRank
Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

Papers

Driven by 18 papers — median percentile 70. Top paper: “Systematic assessment of long-read RNA-seq methods for transcript identification and quantification”.

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3
Top 8%
2.8DataRank
Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

The ENCODE Uniform Analysis Pipelines

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.04.535623
Top 11%
2.0DataRank
Top 11%102 citations

Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud +55 more

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.25.550582
Top 20%
0.991DataRank
Top 20%28 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +78 more

Integration of high-resolution promoter profiling assays reveals novel, cell type–specific transcription start sites across 115 human cell and tissue types

Genome Research(2021)10.1101/gr.275723.121
Top 30%
0.670DataRank
Top 30%15 citations

Xiao‐Ou Zhang, Shaimae I. Elhajjajy, Kaili Fan, Henry Pratt, Fairlie Reese +3 more

An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.26.629296
Top 45%
0.416DataRank
Top 45%12 citations

Henry Pratt, Kaili Fan, Nishigandha Phalke, Jonathan Fisher, Shaimae I. Elhajjajy +37 more

Long-read transcriptomics of a diverse human cohort reveals ancestry bias in gene annotation

Nature Communications(2025)10.1038/s41467-025-66096-x
Top 55%
0.302DataRank
Top 55%5 citations

Fairlie Reese, Sílvia Carbonell Sala, Fabien Degalez, Carme Arnan, Winona Oliveros +5 more

Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation

Cell Genomics(2025)10.1016/j.xgen.2025.101108
Top 70%
0.165DataRank
Top 70%2 citations

Ryan Weber, Elnaz Abdollahzadeh, Nikhila Swarna, Delaney K. Sullivan, Diane Trout +21 more

Long-read sequencing and profiling of RNA-binding proteins reveals the pathogenic mechanism of aberrant splicing of an SCN1A poison exon in epilepsy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.04.538282
N/A
0DataRank · unranked
2 citations

Patricia N. Schneider, Jung Hwa Hong, Eleanor Goes, Masha D Bandouil, Carina G Biar +9 more

Deciphering the impact of genomic variation on function

Nature(2024)10.1038/s41586-024-07510-0
N/A
0DataRank · unranked
88 citations

Jesse M. Engreitz, Heather A. Lawson, Harinder Singh, Lea M. Starita, Gary C. Hon +95 more

Long-read sequencing transcriptome quantification with lr-kallisto

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.19.604364
N/A
0DataRank · unranked
14 citations

Delaney K. Sullivan, A. Sina Booeshaghi, Fairlie Reese, Elisabeth Rebboah, Jasmine Sakr +12 more

Swan: a library for the analysis and visualization of long-read transcriptomes

Bioinformatics(2020)10.1093/bioinformatics/btaa836
N/A
0DataRank · unranked
34 citations

Ali Mortazavi, Fairlie Reese

Perplexity as a Metric for Isoform Diversity in the Human Transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.02.662769
N/A
0DataRank · unranked
3 citations

S H Park, Jiayu Su, Fairlie Reese, Gloria Sheynkman, David A. Knowles +1 more

Swan: a library for the analysis and visualization of long-read transcriptomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.09.143024
N/A
0DataRank · unranked
4 citations

Ali Mortazavi, Fairlie Reese

Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq

Genome biology(2021)10.1186/s13059-021-02505-w
N/A
0DataRank · unranked
64 citations

Fairlie Reese, Katherine Williams, Gabriela Balderrama-Gutierrez, Cassandra McGill, Diane Trout +5 more

Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.26.441522
N/A
0DataRank · unranked
5 citations

Fairlie Reese, Katherine Williams, Gabriela Balderrama-Gutierrez, Cassandra McGill, Diane Trout +5 more

PyWGCNA: A Python package for weighted gene co-expression network analysis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.22.504852
N/A
0DataRank · unranked
12 citations

Fairlie Reese, Ali Mortazavi, Narges Rezaie

PyWGCNA: a Python package for weighted gene co-expression network analysis

Bioinformatics(2023)10.1093/bioinformatics/btad415
N/A
0DataRank · unranked
75 citations

Fairlie Reese, Ali Mortazavi, Narges Rezaie

The ENCODE Uniform Analysis Pipelines

Research Square(2023)10.21203/rs.3.rs-3111932/v1
N/A
0DataRank · unranked
39 citations

Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud +57 more