Andrea L. Cox

Also affiliated with Johns Hopkins Medicine

MedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 66 papers. Top paper: “Persistent SARS-CoV-2–specific immune defects in kidney transplant recipients following third mRNA vaccine dose”.

Persistent SARS-CoV-2–specific immune defects in kidney transplant recipients following third mRNA vaccine dose

American Journal of Transplantation(2023)10.1016/j.ajt.2023.03.014

N/A

0.775DataRank · unranked

19 citations

Andrew H. Karaba, Teresa Po‐Yu Chiang, Allan B. Massie, Diane Brown, Natasha Watson +25 more

Ethical and Practical Issues Associated With the Possibility of Using Controlled Human Infection Trials in Developing a Hepatitis C Virus Vaccine

Clinical Infectious Diseases(2020)10.1093/cid/ciaa640

N/A

0DataRank · unranked

9 citations

Mark Sulkowski, Jeremy Sugarman, Andrea L. Cox

Self-Collected Oral Fluid Saliva Is Insensitive Compared With Nasal-Oropharyngeal Swabs in the Detection of Severe Acute Respiratory Syndrome Coronavirus 2 in Outpatients

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa648

N/A

0DataRank · unranked

28 citations

Carolyn Reuland, Tong Yu, Răzvan Azamfirei, Justin Hardick, Taylor R. Church +38 more

Multi-ancestry fine mapping of interferon lambda and the outcome of acute hepatitis C virus infection

Genes and Immunity(2020)10.1038/s41435-020-00115-3

N/A

0DataRank · unranked

7 citations

Priya Duggal, Chloe L. Thio, Ana Valencia, Thomas R. OʼBrien, Rachel Latanich +27 more

A Multiancestry Sex-Stratified Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa677

N/A

0DataRank · unranked

6 citations

Ana Valencia, Chloe L. Thio, James J. Goedert, Alessandra Mangia, Valeria Piazzolla +24 more

Antibody avidity-based approach to estimate population-level incidence of hepatitis C

Journal of Hepatology(2020)10.1016/j.jhep.2020.03.028

N/A

0DataRank · unranked

4 citations

Veronica R. Bruce, Eshan U. Patel, Jeffrey Quinn, Aylur K. Srikrishnan, Saravanan Shanmugam +12 more

IgM autoantibodies recognizing ACE2 are associated with severe COVID-19

medRxiv(2020)10.1101/2020.10.13.20211664

N/A

0DataRank · unranked

44 citations

David R. Thiemann, Felipe Andrade, Maria Isabel Trejo Zambrano, Jody E. Hooper, Elissa K. Leonard +20 more

Mitochondrial induced T cell apoptosis and aberrant myeloid metabolic programs define distinct immune cell subsets during acute and recovered SARS-CoV-2 infection

medRxiv(2020)10.1101/2020.09.10.20186064

N/A

0DataRank · unranked

25 citations

Katherine Cascino, Alvaro A. Ordoñez, Weiqiang Zhou, Ajay Vaghasia, Anne Hamacher‐Brady +21 more

Durable SARS-CoV-2 B cell immunity after mild or severe disease

medRxiv(2020)10.1101/2020.10.28.20220996

N/A

0DataRank · unranked

21 citations

Nicole Skinner, Paul W. Blair, Han-Sol Park, Kirsten Littlefield, Abhinaya Ganesan +10 more

Cell-free DNA maps COVID-19 tissue injury and risk of death and can cause tissue injury

JCI Insight(2021)10.1172/jci.insight.147610

N/A

0DataRank · unranked

153 citations

Takayuki Tsuji, Fayaz Seifuddin, Moon Kyoo Jang, Peter S.T. Yuen, Hyesik Kong +10 more

Metabolic programs define dysfunctional immune responses in severe COVID-19 patients

Cell Reports(2021)10.1016/j.celrep.2021.108863

N/A

0DataRank · unranked

136 citations

Katherine Cascino, Alvaro A. Ordoñez, Weiqiang Zhou, Ajay Vaghasia, Anne Hamacher‐Brady +21 more

Durable SARS-CoV-2 B cell immunity after mild or severe disease

Journal of Clinical Investigation(2021)10.1172/jci145516

N/A

0DataRank · unranked

98 citations

Nicole Skinner, Paul W. Blair, Han-Sol Park, Kirsten Littlefield, Abhinaya Ganesan +11 more

Functional characterization of CD4+ T cell receptors crossreactive for SARS-CoV-2 and endemic coronaviruses

Journal of Clinical Investigation(2021)10.1172/jci146922

N/A

0DataRank · unranked

92 citations

Boyang Zhang, Bezawit A. Woldemeskel, Caroline C. Garliss, Laurene S. Cheung, Dilshad Choudhury +23 more

The Clinical Course of COVID-19 in the Outpatient Setting: A Prospective Cohort Study

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab007

N/A

0DataRank · unranked

74 citations

Diane Brown, Minyoung Jang, Annukka A.R. Antar, Jeanne Keruly, Vismaya S. Bachu +42 more

Differential Cytokine Signatures of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Influenza Infection Highlight Key Differences in Pathobiology

Clinical Infectious Diseases(2021)10.1093/cid/ciab376

N/A

0DataRank · unranked

48 citations

Weiqiang Zhou, Leon L. Hsieh, Alexis Figueroa, Guido Massaccesi, Richard E. Rothman +12 more

Distinct Cytokine and Chemokine Dysregulation in Hospitalized Children With Acute Coronavirus Disease 2019 and Multisystem Inflammatory Syndrome With Similar Levels of Nasopharyngeal Severe Acute Respiratory Syndrome Coronavirus 2 Shedding

The Journal of Infectious Diseases(2021)10.1093/infdis/jiab285

N/A

0DataRank · unranked

44 citations

Theodore Kouo, Andrew H. Karaba, Oren Gordon, Katherine Z J Fenstermacher, Jeanette Beaudry +13 more

Controlled Human Infection Model — Fast Track to HCV Vaccine?

New England Journal of Medicine(2021)10.1056/nejmsb2109093

N/A

0DataRank · unranked

39 citations

Jordan J. Feld, Andrea L. Cox, Charles M. Rice, T. Jake Liang

Delayed Rise of Oral Fluid Antibodies, Elevated BMI, and Absence of Early Fever Correlate With Longer Time to SARS-CoV-2 RNA Clearance in a Longitudinally Sampled Cohort of COVID-19 Outpatients

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab195

N/A

0DataRank · unranked

19 citations

Tong Yu, Nora Pisanic, Răzvan Azamfirei, Jeffrey A. Tornheim, Diane Brown +39 more

High-value Laboratory Testing for Hospitalized COVID-19 Patients: A Review

Future Virology(2021)10.2217/fvl-2020-0316

N/A

0DataRank · unranked

22 citations

Michael B. Streiff, Steven Menez, Teresa K. Chen, Nisha A. Gilotra, Erin D. Michos +9 more

People with HIV-1 Demonstrate Type 1 Interferon Refractoriness Associated with Upregulated USP18

Journal of Virology(2021)10.1128/jvi.01777-20

N/A

0DataRank · unranked

12 citations

Ramy El–Diwany, Laura K. Cohen, Kimberly E. Rousseau, Christopher Y. K. Williams, Rebecca T. Veenhuis +6 more

The NIH Lipo-COVID Study: A pilot NMR investigation of lipoprotein subfractions and other metabolites in patients with severe COVID-19.

(2021)10.33774/chemrxiv-2021-dctkq

N/A

0DataRank · unranked

9 citations

Hyesik Kong, Maureen Sampson, James D. Otvos, Andrea L. Cox, Sean Agbor-Enoh +2 more

Neutralizing IFNL3 Autoantibodies in Severe COVID-19 Identified Using Molecular Indexing of Proteins by Self-Assembly

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.02.432977

N/A

0DataRank · unranked

8 citations

Jonathan Gunn, Puwanat Sangkhapreecha, Daniel R. Monaco, Xuwen Alice Zheng, Hung-Ji Tsai +18 more

Differential Cytokine Signatures of SARS-CoV-2 and Influenza Infection Highlight Key Differences in Pathobiology

medRxiv(2021)10.1101/2021.01.29.21250317

N/A

0DataRank · unranked

7 citations

Weiqiang Zhou, Leon L. Hsieh, Alexis Figueroa, Guido Massaccesi, Richard E. Rothman +11 more

Differentiation of SARS-CoV-2 naturally infected and vaccinated individuals in an inner-city emergency department

medRxiv(2021)10.1101/2021.10.13.21264968

N/A

0DataRank · unranked

7 citations

Yu‐Hsiang Hsieh, Reinaldo E. Fernández, Gaby Dashler, Emily Egbert, Shawn A. Truelove +15 more

Delayed rise of oral fluid antibodies, elevated BMI, and absence of early fever correlate with longer time to SARS-CoV-2 RNA clearance in an longitudinally sampled cohort of COVID-19 outpatients

medRxiv(2021)10.1101/2021.03.02.21252420

N/A

0DataRank · unranked

3 citations

Tong Yu, Nora Pisanic, Răzvan Azamfirei, Jeffrey A. Tornheim, Diane Brown +39 more

SARS-COV-2 induced Diarrhea is inflammatory, Ca 2+ Dependent and involves activation of calcium activated Cl channels

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.27.441695

N/A

0DataRank · unranked

1 citations

Chung-Ming Tse, Karol Dokładny, Manmeet Rawat, Ivy Horwitz, Chunyan Ye +12 more

The NIH Lipo-COVID Study: A pilot NMR investigation of lipoprotein subfractions and other metabolites in patients with severe COVID-19.

ChemRxiv(2021)10.26434/chemrxiv-2021-dctkq

N/A

0DataRank · unranked

1 citations

Hyesik Kong, Maureen Sampson, James D. Otvos, Andrea L. Cox, Sean Agbor-Enoh +2 more

Convergent antibody responses associated with broad neutralization of hepatitis C virus and clearance of infection

medRxiv(2021)10.1101/2021.09.11.21263416

N/A

0DataRank · unranked

0 citations

Clinton O. Ogega, Nicole Frumento, Kaitlyn E. Clark, Srinivasan Yegnasubramanian, Andrea L. Cox +4 more

Unbiased discovery of autoantibodies associated with severe COVID-19 via genome-scale self-assembled DNA-barcoded protein libraries

Nature Biomedical Engineering(2022)10.1038/s41551-022-00925-y

N/A

0DataRank · unranked

58 citations

Jonathan Gunn, Puwanat Sangkhapreecha, Daniel R. Monaco, Xuwen Alice Zheng, Hung-Ji Tsai +19 more

IgM anti-ACE2 autoantibodies in severe COVID-19 activate complement and perturb vascular endothelial function

JCI Insight(2022)10.1172/jci.insight.158362

N/A

0DataRank · unranked

56 citations

David R. Thiemann, Felipe Andrade, Maria Isabel Trejo‐Zambrano, Elissa K. Leonard, Jamie B. Spangler +33 more

Markers of endothelial cell activation are associated with the severity of pulmonary disease in COVID-19

PLoS ONE(2022)10.1371/journal.pone.0268296

N/A

0DataRank · unranked

34 citations

Kimberly Y. Smith, Lisa R. Yanek, Nuria Amat-Alcaron, David R. Thiemann, Andrea L. Cox +3 more

SARS-CoV-2–specific immune responses in boosted vaccine recipients with breakthrough infections during the Omicron variant surge

JCI Insight(2022)10.1172/jci.insight.159474

N/A

0DataRank · unranked

21 citations

Caroline C. Garliss, Tihitina Y. Aytenfisu, Trevor S. Johnston, Evan J. Beck, Arbor G. Dykema +10 more

Repeated exposure to heterologous hepatitis C viruses associates with enhanced neutralizing antibody breadth and potency

Journal of Clinical Investigation(2022)10.1172/jci160058

N/A

0DataRank · unranked

19 citations

Alexis Figueroa, Tingchang Wang, Muhammad Zahid, Shuyi Wang, Guido Massaccesi +9 more

Trans-ancestral fine-mapping of MHC reveals key amino acids associated with spontaneous clearance of hepatitis C in HLA-DQβ1

The American Journal of Human Genetics(2022)10.1016/j.ajhg.2022.01.001

N/A

0DataRank · unranked

15 citations

Candelaria Vergara, Chloe L. Thio, Nicolas Vince, Venceslas Douillard, Alba Grifoni +28 more

Mission, Organization, and Future Direction of the Serological Sciences Network for COVID-19 (SeroNet) Epidemiologic Cohort Studies

Open Forum Infectious Diseases(2022)10.1093/ofid/ofac171

N/A

0DataRank · unranked

15 citations

Fred R. Hirsch, Lawrence H. Kushi, Wendy N. Nembhard, James M. Crawford, Nicholas J. Mantis +92 more

Adaptive immune responses in vaccinated patients with symptomatic SARS-CoV-2 Alpha infection

JCI Insight(2022)10.1172/jci.insight.155944

N/A

0DataRank · unranked

14 citations

Janna R. Shapiro, Ioannis Sitaras, Bezawit A. Woldemeskel, Caroline C. Garliss, Amanda Dziedzic +33 more

B cell overexpression of FCRL5 and PD-1 is associated with low antibody titers in HCV infection

PLoS Pathogens(2022)10.1371/journal.ppat.1010179

N/A

0DataRank · unranked

11 citations

Nicole Skinner, Andrew I. Flyak, Kaitlyn E. Clark, Nathan L. Board, Pamela J. Björkman +5 more

Impact of Seasonal Coronavirus Antibodies on Severe Acute Respiratory Syndrome Coronavirus 2 Vaccine Responses in Solid Organ Transplant Recipients

Clinical Infectious Diseases(2022)10.1093/cid/ciac652

N/A

0DataRank · unranked

5 citations

Weiqiang Zhou, Shuai Li, Tihitina Y. Aytenfisu, Trevor S. Johnston, Olivia Akinde +15 more

Cross-reactive antibodies facilitate innate sensing of dengue and Zika viruses

JCI Insight(2022)10.1172/jci.insight.151782

N/A

0DataRank · unranked

6 citations

Kimberly E. Rousseau, Katherine Cascino, Guido Massaccesi, William H. Aisenberg, Wensheng Luo +7 more

Integrated cell-free DNA and cytokine analysis uncovers distinct tissue injury and immune response patterns in solid organ transplant recipients with COVID-19

Research Square(2022)10.21203/rs.3.rs-1262270/v1

N/A

0DataRank · unranked

5 citations

Weiqiang Zhou, Andrew H. Karaba, Taibo Li, Fayaz Seifuddin, Alex G. Rittenhouse +11 more

Pseudomonas aeruginosa Elicits Sustained IL-1β Upregulation in Alveolar Macrophages from Lung Transplant Recipients

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.26.489590

N/A

0DataRank · unranked

0 citations

A.F. Villabona-Rueda, Samantha A. Whiteside, Joby Mathew, Matthew Kelley, Sean Agbor-Enoh +7 more

Immunogenicity and Safety of Hepatitis B Virus (HBV) Vaccine With a Toll-Like Receptor 9 Agonist Adjuvant in HBV Vaccine-Naïve People With Human Immunodeficiency Virus

Clinical Infectious Diseases(2023)10.1093/cid/ciad201

N/A

0DataRank · unranked

35 citations

Minhee Kang, Triin Umbleja, Anchalee Avihingsanon, Patcharaphan Sugandhavesa, Andrea L. Cox +25 more

Cell-free DNA reveals distinct pathology of multisystem inflammatory syndrome in children

Journal of Clinical Investigation(2023)10.1172/jci171729

N/A

0DataRank · unranked

13 citations

Katerina Roznik, Neelam Redekar, Tom Hill, Weiqiang Zhou, Zainab Apalara +15 more

Convergent antibody responses are associated with broad neutralization of hepatitis C virus

Frontiers in Immunology(2023)10.3389/fimmu.2023.1135841

N/A

0DataRank · unranked

10 citations

Clinton O. Ogega, Nicole Frumento, Kaitlyn E. Clark, Harry Paul, Srinivasan Yegnasubramanian +9 more

Neutralizing antibodies evolve to exploit vulnerable sites in the HCV envelope glycoprotein E2 and mediate spontaneous clearance of infection

Immunity(2024)10.1016/j.immuni.2023.12.004

N/A

0DataRank · unranked

22 citations

Ariadne Sinnis-Bourozikas, Harry T. Paul, Georgia Stavrakis, Muhammad Zahid, Shuyi Wang +6 more

Heterologous versus homologous boosting elicits qualitatively distinct, BA.5–cross-reactive T cells in transplant recipients

JCI Insight(2023)10.1172/jci.insight.168470

N/A

0DataRank · unranked

11 citations

Wabathi Ngecu, Laila Stoddart, Trevor S. Johnston, Amy Chang, Katherine Cascino +11 more

Pseudomonas-dominant microbiome elicits sustained IL-1β upregulation in alveolar macrophages from lung transplant recipients

The Journal of Heart and Lung Transplantation(2023)10.1016/j.healun.2023.04.005

N/A

0DataRank · unranked

7 citations

A.F. Villabona-Rueda, Samantha A. Whiteside, Joby Mathew, Matthew Kelley, Sean Agbor-Enoh +7 more

Immunological Monitoring in Hepatitis C Virus Controlled Human Infection Model

Clinical Infectious Diseases(2023)10.1093/cid/ciad359

N/A

0DataRank · unranked

4 citations

Andrea L. Cox, Christopher M. Walker, Naglaa H. Shoukry

Application of machine learning models to identify serological predictors of COVID-19 severity and outcomes

Research Square(2023)10.21203/rs.3.rs-3463155/v1

N/A

0DataRank · unranked

0 citations

Santosh Dhakal, Anna Yin, Marta Escarra‐Senmarti, Zoe O Demko, Nora Pisanic +23 more

A scoping review of global COVID-19 vaccine hesitancy among pregnant persons

npj Vaccines(2024)10.1038/s41541-024-00913-0

N/A

0DataRank · unranked

27 citations

Alyssa M. Kretz, Heang-Lee Tan, Laura A. St Clair, Maclaine A. Parish, Hana Golding +10 more

Translating insights into therapies for Long Covid

Science Translational Medicine(2024)10.1126/scitranslmed.ado2106

N/A

0DataRank · unranked

19 citations

Andrea L. Cox, Annukka A.R. Antar

COVID-19 vaccination induces distinct T-cell responses in pediatric solid organ transplant recipients and immunocompetent children

npj Vaccines(2024)10.1038/s41541-024-00866-4

N/A

0DataRank · unranked

10 citations

Jiashu Xue, Georgia Stavrakis, Trevor S. Johnston, Divya Kalluri, Rivka Ohsie +9 more

Bystander monocytic cells drive infection-independent NLRP3 inflammasome response to SARS-CoV-2

mBio(2024)10.1128/mbio.00810-24

N/A

0DataRank · unranked

7 citations

Monika M. Looney, Alexis Figueroa, Guido Massaccesi, Georgia Stavrakis, Eduardo Anaya +8 more

Reduced control of SARS-CoV-2 infection associates with lower mucosal antibody responses in pregnancy

mSphere(2024)10.1128/msphere.00812-23

N/A

0DataRank · unranked

6 citations

Raghda E. Eldesouki, Jaiprasath Sachithanandham, Anna Yin, Amary Fall, C. Paul Morris +15 more

Application of machine learning algorithms to identify serological predictors of COVID-19 severity and outcomes

Communications Medicine(2024)10.1038/s43856-024-00658-w

N/A

0DataRank · unranked

3 citations

Anna Yin, Marta Escarra‐Senmarti, Zoe O Demko, Nora Pisanic, Trevor S. Johnston +23 more

Emergency Myelopoiesis Distinguishes Multisystem Inflammatory Syndrome in Children From Pediatric Severe Coronavirus Disease 2019

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae032

N/A

0DataRank · unranked

2 citations

T. Andargie, T Scott Johnston, Oren Gordon, Yi Wang, Nadine Peart Akindele +10 more

Rapid Wane and Recovery of XBB Sublineage Neutralization After Sequential Omicron-based Vaccination in Solid Organ Transplant Recipients

Clinical Infectious Diseases(2024)10.1093/cid/ciae279

N/A

0DataRank · unranked

3 citations

Camille Hage, Aura T. Abedon, Snigdha Panda, Jennifer L. Alejo, Yolanda Eby +6 more

Multiparatopic antibodies induce targeted downregulation of programmed death-ligand 1

Cell chemical biology(2024)10.1016/j.chembiol.2024.02.014

N/A

0DataRank · unranked

2 citations

Bunyarit Meksiriporn, Jiacheng Tan, Rakeeb Kureshi, Akhilesh Mishra, Kyle J. Kaeo +12 more

COVID-19 Diarrhea Is Inflammatory, Caused by Direct Viral Effects Plus Major Role of Virus-induced Cytokines

Cellular and Molecular Gastroenterology and Hepatology(2024)10.1016/j.jcmgh.2024.101383

N/A

0DataRank · unranked

1 citations

Chung-Ming Tse, Rafiq Sarker, Ruxian Lin, Karol Dokładny, Manmeet Rawat +18 more

Continued Elevation of Interleukin-18 and Interferon-γ After Initiation of Antiretroviral Therapy and Clinical Failure in a Diverse Multicountry Human Immunodeficiency Virus Cohort

UNC Libraries(2024)10.17615/jkbd-4005

N/A

0DataRank · unranked

0 citations

Wei-Teng Yang, Nagalingeswaran Kumarasamy, Mina C. Hosseinipour, Cynthia Riviere, Srikanth Tripathy +21 more

Development of a Rapid Automated Point-of-Care Test for Hepatitis C Viral RNA on the DASH Rapid Polymerase Chain Reaction System

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf608

N/A

0DataRank · unranked

4 citations

Matthew A. Butzler, Claudia Hawkins, Yukari C. Manabe, Jeffrey P. Holden, David L. Thomas +3 more

A third COVID-19 vaccine dose in kidney transplant recipients induces antibody response to vaccine and Omicron variants but shows limited Ig subclass switching

Microbiology Spectrum(2025)10.1128/spectrum.02190-24

N/A

0DataRank · unranked

3 citations

Jaiprasath Sachithanandham, John S. Lee, Janna R. Shapiro, Maggie Li, Ioannis Sitaris +13 more

Pregnancy Reduces COVID-19 Vaccine Immunity Against Novel Variants

medRxiv(2025)10.1101/2025.01.29.25321357

N/A

0DataRank · unranked

1 citations

Jaiprasath Sachithanandham, L. Gutiérrez, Han-Sol Park, Anna Yin, Katerina Roznik +17 more

An efficient vaccine clinical trial: ACTG A5379 hepatitis B vaccine trial in persons with HIV

Vaccine(2025)10.1016/j.vaccine.2025.127028

N/A

0DataRank · unranked

0 citations

Kristen Marks, Andrea L. Cox, Kenneth E. Sherman, Minhee Kang

Herpes simplex virus type 1 inflammasome activation in proinflammatory human macrophages is dependent on NLRP3, ASC, and caspase-1

PLoS ONE(2020)10.1371/journal.pone.0229570

N/A

0DataRank · unranked

48 citations

Alexis Figueroa, Guido Massaccesi, Sara Botto, Victor R. DeFilippis, Andrea L. Cox +1 more

Transcriptional programming of tumor-specific conventional CD4+ T cells in resectable non-small cell lung cancer 9240

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.2666

N/A

0DataRank · unranked

0 citations

Marni Nishimoto, Yi Man, Zhen Zeng, Sydney Connor, Lauren E. Tirado +6 more