Yan Zhang

Fujian Agriculture and Forestry University

Also affiliated with The University of Texas at Austin

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 38 papers. Top paper: “Variation of C-terminal domain governs RNA polymerase II genomic locations and alternative splicing in eukaryotic transcription”.

Variation of C-terminal domain governs RNA polymerase II genomic locations and alternative splicing in eukaryotic transcription

Nature Communications(2024)10.1038/s41467-024-52391-6

N/A

0.440DataRank · unranked

11 citations

Wantae Kim, Svetlana Panina, Joshua E. Mayfield, Bede Portz, Yan Zhang +1 more

Enzyme-mediated depletion of serum l -Met abrogates prostate cancer growth via multiple mechanisms without evidence of systemic toxicity

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1917362117

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0DataRank · unranked

54 citations

Achinto Saha, Wupeng Yan, Kendra Garrison, Candice Lamb, Renu Pandey +9 more

Electrophoretic Mobility Shift Assay of in vitro Phosphorylated RNA Polymerase II Carboxyl-terminal Domain Substrates

BIO-PROTOCOL(2020)10.21769/bioprotoc.3648

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0DataRank · unranked

2 citations

Seema Irani, Yan Zhang, Joshua E. Mayfield

Kinetic and thermodynamic analysis defines roles for two metal ions in DNA polymerase specificity and catalysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.20.347138

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0DataRank · unranked

1 citations

Serdal Kırmızıaltın, Adrienne Chang, Joshua E. Mayfield, Yan Zhang, Kenneth A. Johnson +1 more

Simplicity is the Ultimate Sophistication—Crosstalk of Post-translational Modifications on the RNA Polymerase II

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.166912

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0DataRank · unranked

33 citations

Wanjie Yang, Seema Irani, Yan Zhang, Mukesh Kumar Venkat Ramani

What's all the phos about? Insights into the phosphorylation state of the RNA polymerase II C-terminal domain via mass spectrometry

RSC Chemical Biology(2021)10.1039/d1cb00083g

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0DataRank · unranked

13 citations

Rosamaria Y. Moreno, Edwin E. Escobar, Mukesh Kumar Venkat Ramani, Jennifer S. Brodbelt, Yan Zhang +1 more

Evaluating Spatiotemporal Dynamics of Phosphorylation of RNA Polymerase II Carboxy-Terminal Domain by Ultraviolet Photodissociation Mass Spectrometry

Journal of the American Chemical Society(2021)10.1021/jacs.1c03321

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0DataRank · unranked

12 citations

Mukesh Kumar Venkat Ramani, Yan Zhang, Jennifer S. Brodbelt, Edwin E. Escobar

Kinetic and Structural Analysis of Two Linkers in the Tautomerase Superfamily: Analysis and Implications

Biochemistry(2021)10.1021/acs.biochem.1c00220

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0DataRank · unranked

7 citations

Brenda P. Medellin, Jake A. LeVieux, Kaci Erwin, Emily B. Lancaster, William H. Johnson +7 more

Advancements in chemical biology targeting the kinases and phosphatases of RNA polymerase II-mediated transcription

Current Opinion in Chemical Biology(2021)10.1016/j.cbpa.2021.02.002

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0DataRank · unranked

3 citations

Blase M. LeBlanc, Wendy L. Matthews, Zhong‐Yin Zhang, Yan Zhang, Wantae Kim

Using structurally fungible biosensors to evolve improved alkaloid biosyntheses

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.07.447399

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0DataRank · unranked

4 citations

Wantae Kim, Nathaniel T. Burkholder, Kamyab Javanmardi, Ross Thyer, Yan Zhang +3 more

Using fungible biosensors to evolve improved alkaloid biosyntheses

Nature Chemical Biology(2022)10.1038/s41589-022-01072-w

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0DataRank · unranked

92 citations

Wantae Kim, Nathaniel T. Burkholder, Kamyab Javanmardi, Ross Thyer, Yan Zhang +3 more

Bypassing evolutionary dead ends and switching the rate-limiting step of a human immunotherapeutic enzyme

Nature Catalysis(2022)10.1038/s41929-022-00856-6

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0DataRank · unranked

20 citations

Christos S. Karamitros, Kyle Ford, Catrina M. Somody, Ahlam N. Qerqez, Kyle Murray +20 more

Elucidation of divergent desaturation pathways in the formation of vinyl isonitrile and isocyanoacrylate

Nature Communications(2022)10.1038/s41467-022-32870-4

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0DataRank · unranked

14 citations

Tzu‐Yu Chen, Lide Cha, Grace Zhou, Kristi Xing, Nicholas Koenig Canty +3 more

A mutagenic analysis of NahE, a hydratase-aldolase in the naphthalene degradative pathway

Archives of Biochemistry and Biophysics(2022)10.1016/j.abb.2022.109471

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0DataRank · unranked

5 citations

William H. Johnson, Jake A. LeVieux, Haley A. Hardtke, Yan Zhang, Christian P. Whitman +1 more

Kinetic, Inhibition, and Structural Characterization of a Malonate Semialdehyde Decarboxylase-like Protein from Calothrix sp. PCC 6303: A Gateway to the non-Pro1 Tautomerase Superfamily Members

Biochemistry(2022)10.1021/acs.biochem.2c00101

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0DataRank · unranked

4 citations

Wanjie Yang, William H. Johnson, Bert‐Jan Baas, Yan Zhang, Christian P. Whitman +1 more

Targeted Covalent Inhibition of Small CTD Phosphatase‐1 to Promote the Degradation of REST Transcription Factor in Human Cells

The FASEB Journal(2022)10.1096/fasebj.2022.36.s1.l7957

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0DataRank · unranked

0 citations

Brenda P. Medellin, Wanjie Yang, Dio Siegel, Yan Zhang

Increasing Reduction Potentials of Type 1 Copper Center and Catalytic Efficiency of Small Laccase from Streptomyces coelicolor through Secondary Coordination Sphere Mutations

Angewandte Chemie International Edition(2023)10.1002/anie.202314019

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0DataRank · unranked

25 citations

Avery Vilbert, Chang Cui, Evan N. Mirts, Lucas H. Williams, Wantae Kim +3 more

Distinctive interactomes of RNA polymerase II phosphorylation during different stages of transcription

iScience(2023)10.1016/j.isci.2023.107581

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0DataRank · unranked

13 citations

Kyle J. Juetten, Svetlana Panina, Jamie P. Butalewicz, Brendan M. Floyd, Mukesh Kumar Venkat Ramani +4 more

Introduction of Asymmetry in the Fused 4-Oxalocrotonate Tautomerases

Biochemistry(2023)10.1021/acs.biochem.3c00180

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0DataRank · unranked

2 citations

Renata Moreno, Bert‐Jan Baas, Yan Zhang, Christian P. Whitman, Kaci Erwin

Biosensor and machine learning-aided engineering of an amaryllidaceae enzyme

Nature Communications(2024)10.1038/s41467-024-46356-y

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0DataRank · unranked

50 citations

Daniel J. Diaz, Wantae Kim, Daniel J. Acosta, Tyler L. Dangerfield, Mason W. Schechter +8 more

Selective 8-oxo-rG stalling occurs in the catalytic core of polynucleotide phosphorylase (PNPase) during degradation

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2317865121

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0DataRank · unranked

9 citations

Wantae Kim, Shawn W. Schowe, Kathleen Taylor, Runhua Han, Vashita Jain +10 more

Evolving dual-trait EPSP synthase variants using a synthetic yeast selection system

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2317027121

N/A

0DataRank · unranked

7 citations

Wantae Kim, Hongyuan Lu, Clayton T. Larue, Shirley Guo, Sierra M. Brooks +5 more

Insights into the Main Protease of SARS-CoV-2: Thermodynamic Analysis, Structural Characterization, and the Impact of Inhibitors

Analytical Chemistry(2024)10.1021/acs.analchem.4c02311

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0DataRank · unranked

5 citations

Sarah N. Sipe, Kyle J. Juetten, Virginia K. James, Kangsan Kim, Yan Zhang +3 more

Tracking Inhibition of Human Small C-Terminal Domain Phosphatase 1 Using 193 nm Ultraviolet Photodissociation Mass Spectrometry

Journal of the American Society for Mass Spectrometry(2024)10.1021/jasms.4c00098

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0DataRank · unranked

3 citations

Wanjie Yang, Michael B. Lanzillotti, Kyle J. Juetten, Samuel Shields, Dionicio Siegel +3 more

Collaborators or competitors: the communication between RNA polymerase II and the nucleosome during eukaryotic transcription

Critical Reviews in Biochemistry and Molecular Biology(2024)10.1080/10409238.2024.2306365

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0DataRank · unranked

3 citations

Yan Zhang, Haley A. Hardtke

Targeting of REST with rationally-designed small molecule compounds exhibits synergetic therapeutic potential in human glioblastoma cells

BMC Biology(2024)10.1186/s12915-024-01879-0

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0DataRank · unranked

2 citations

Joshua V. Schweer, Qian Zhang, Gaurav Raina, Haley A. Hardtke, Seungjin Kim +4 more

Protocol for the in vitro reconstruction of site-specifically phosphorylated RNA Pol II to identify the recruitment of novel transcription regulators

STAR Protocols(2024)10.1016/j.xpro.2024.103277

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0DataRank · unranked

2 citations

Rosamaria Y. Moreno, Yan Zhang, Haley A. Hardtke

Histone acetyltransferase HAF2 associates with PDC to control H3K14ac and H3K23ac in ethylene response

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2023.12.31.573642

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0DataRank · unranked

5 citations

Zhengyao Shao, Guihua Wang, Bo Zhao, Haley A. Hardtke, Josh Leong +4 more

Variation of C-terminal domain governs RNA polymerase II genomic locations and alternative splicing in eukaryotic transcription

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.01.573828

N/A

0DataRank · unranked

2 citations

Wantae Kim, Svetlana Panina, Joshua E. Mayfield, Bede Portz, Yan Zhang +1 more

RPRD1B's direct interaction with phosphorylated RNA polymerase II regulates polyadenylation of cell cycle genes and drives cancer progression

RSC Chemical Biology(2025)10.1039/d4cb00212a

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0DataRank · unranked

5 citations

Svetlana Panina, Yan Zhang, Rosamaria Y. Moreno

Histone acetyltransferase HAF2 associates with pyruvate dehydrogenase complex to control H3K14ac and H3K23ac in ethylene response

Cell Reports(2025)10.1016/j.celrep.2025.115580

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0DataRank · unranked

3 citations

Zhengyao Shao, Guihua Wang, Bo Zhao, Haley A. Hardtke, Josh Leong +4 more

Discovery and Functional Characterization of SnFDHal, an Efficient Tryptophan 5-Halogenase from Streptomyces noursei

Applied Biochemistry and Biotechnology(2025)10.1007/s12010-025-05449-0

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0DataRank · unranked

1 citations

Haley A. Hardtke, Mark D. Gold, Sean Johnson, Yan Zhang, Jixun Zhan +1 more

Structural and mechanistic insights into KslB, a bacterial Pictet–Spenglerase in kitasetaline biosynthesis

RSC Chemical Biology(2025)10.1039/d5cb00070j

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0DataRank · unranked

3 citations

Ziyang Zheng, Kangsan Kim, Yu‐Hsuan Lee, Hung‐wen Liu, Yan Zhang +1 more

SsDiHal: discovery and engineering of a novel tryptophan dihalogenase

Journal of Biological Engineering(2025)10.1186/s13036-025-00518-8

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0DataRank · unranked

2 citations

Haley A. Hardtke, Wenzhu Tang, Jie Ren, Hayat Ullah, Xu-Dong Zhou +3 more

Conversion of Inactive Non-Pro1 Tautomerase Superfamily Members into Active Tautomerases: Analysis of the Pro1 Mutants

Biochemistry(2025)10.1021/acs.biochem.4c00338

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0DataRank · unranked

1 citations

Haley A. Hardtke, Trevor R. Melkonian, Mukesh Venkat Ramani, William H. Johnson, Bert‐Jan Baas +3 more

Combinatorial phosphorylation on CTD of RNA polymerase II selectively controls transcription and export of protein-coding mRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.13.632769

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0DataRank · unranked

2 citations

Seema Irani, Haley A. Hardtke, Renee Stephenson, Brendan M. Floyd, Rosamaria Y. Moreno +4 more

Visible Light Mediated Bidirectional Control over Carbonic Anhydrase Activity in Cells and in Vivo Using Azobenzenesulfonamides

Journal of the American Chemical Society(2020)10.1021/jacs.0c05383

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0DataRank · unranked

55 citations

Timothy P. Kuka, Mandira Banik, Brenda P. Medellin, Chinh Q. Ngo, Da Xie +9 more

Unmasking a hidden code during transcription: A practical strategy to reveal Thr4 phosphorylation in RNA polymerase II

Methods in enzymology on CD-ROM/Methods in enzymology(2025)10.1016/bs.mie.2025.10.005

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0DataRank · unranked

0 citations

Qian Zhang, Yan Zhang, Renee Stephenson