🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Boris Oskotsky

University of California, San Francisco

ORCID: 0000-0002-9364-7051
MedicineComputer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
7.1Author DataRank

Indexed papers

5in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comprehensive analysis of normal adjacent to tumor transcriptomes

Nature Communications(2017)10.1038/s41467-017-01027-z
Top 3%
6.6DataRank
Top 3%655 citations

Roman Camarda, Justin Odegaard, Hyojung Paik, Boris Oskotsky, Gregor Krings +6 more

Papers

Driven by 25 papers — median percentile 41. Top paper: “Comprehensive analysis of normal adjacent to tumor transcriptomes”.

Comprehensive analysis of normal adjacent to tumor transcriptomes

Nature Communications(2017)10.1038/s41467-017-01027-z
Top 3%
6.6DataRank
Top 3%655 citations

Roman Camarda, Justin Odegaard, Hyojung Paik, Boris Oskotsky, Gregor Krings +6 more

Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes

npj Digital Medicine(2020)10.1038/s41746-020-0258-y
N/A
4.8DataRank · unranked
110 citations

Kathleen Muenzen, Thomas A. Peterson, Xuancheng Fan, Benjamin Scott Glicksberg, Gundolf Schenk +9 more

CovidCounties is an interactive real time tracker of the COVID19 pandemic at the level of US counties

Scientific Data(2020)10.1038/s41597-020-00731-8
N/A
1.2DataRank · unranked
19 citations

Matthew Elliott, Arman Mosenia, Boris Oskotsky, Samuel Solodar, Rohit Vashisht +5 more

A certified de-identification system for all clinical text documents for information extraction at scale

JAMIA Open(2023)10.1093/jamiaopen/ooad045
N/A
1.1DataRank · unranked
47 citations

Gundolf Schenk, Kathleen Muenzen, Boris Oskotsky, Habibeh Ashouri Choshali, Thomas Plunkett +3 more

ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data

JAMIA Open(2019)10.1093/jamiaopen/ooy059
N/A
0.978DataRank · unranked
13 citations

Boris Oskotsky, Nicholas Giangreco, Phyllis M Thangaraj, Debajyoti Datta, Remi Frazier +7 more

Comparing Ethnicity-Specific Reference Intervals for Clinical Laboratory Tests from EHR Data

The Journal of Applied Laboratory Medicine(2018)10.1373/jalm.2018.026492
N/A
0.581DataRank · unranked
47 citations

Hyojung Paik, Boris Oskotsky, Ruth Tor, Elad Ziv, Noah Zaitlen +3 more

PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model

Bioinformatics(2019)10.1093/bioinformatics/btz409
N/A
0.561DataRank · unranked
41 citations

Boris Oskotsky, Phyllis M Thangaraj, Nicholas Giangreco, Marcus A. Badgeley, Kipp W. Johnson +19 more

Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101350
N/A
0.546DataRank · unranked
37 citations

Tomiko Oskotsky, Alice Tang, Alennie Roldan, Verena Chung, Connie Ha +56 more

Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Genome biology(2022)10.1186/s13059-021-02589-4
N/A
0.505DataRank · unranked
28 citations

Boris Oskotsky, ATUL J. BUTTE, Zicheng Hu, Navchetan Kaur

A Biomedical Open Knowledge Network Harnesses the Power of AI to Understand Deep Human Biology

AI Magazine(2022)10.1609/aimag.v43i1.19125
N/A
0.345DataRank · unranked
9 citations

Katy Börner, John P. Morris, Charlotte A. Nelson, Karthik Soman, Erica Schleimer +15 more

A biomedical open knowledge network harnesses the power of AI to understand deep human biology

AI Magazine(2022)10.1002/aaai.12037
N/A
0.330DataRank · unranked
8 citations

Katy Börner, John P. Morris, Charlotte A. Nelson, Karthik Soman, Erica Schleimer +15 more

Generation of guideline-based clinical decision trees in oncology using large language models

medRxiv(2024)10.1101/2024.03.04.24303737
N/A
0.300DataRank · unranked
4 citations

Eduardo Rodriguez Almaraz, Amir Ashraf Ganjouei, Arvind Suresh, Travis Zack, Maxim Bravo +6 more

VMAP: Vaginal Microbiome Atlas during Pregnancy

JAMIA Open(2024)10.1093/jamiaopen/ooae099
Top 56%
0.290DataRank
Top 56%5 citations

Tomiko Oskotsky, Boris Oskotsky, Camilla Wibrand, Alennie Roldan, Alice Tang +19 more

VMAP: Vaginal Microbiome Atlas During Pregnancy

medRxiv(2023)10.1101/2023.03.21.23286947
Top 59%
0.263DataRank
Top 59%3 citations

Tomiko Oskotsky, Boris Oskotsky, Camilla Wibrand, Alennie Roldan, Alice Tang +19 more

CovidCounties - an interactive, real-time tracker of the COVID-19 pandemic at the level of US counties

medRxiv(2020)10.1101/2020.04.28.20083279
N/A
0.224DataRank · unranked
2 citations

Matthew Elliott, Arman Mosenia, Boris Oskotsky, Rohit Vashisht, Travis Zack +4 more

Mapping Chemical-Gene Interactions for Developmental Lethality and Pregnancy Loss

medRxiv(2025)10.1101/2025.10.03.25337209
Top 100%
0DataRank
Top 100%0 citations

Amrita Nagasuri, Boris Oskotsky, Leen Arnaout, Polina Minkovski, Gonçalo dos Santos Correia +9 more

Additional file 4 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132789
N/A
0DataRank · unranked
0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Additional file 3 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132786
N/A
0DataRank · unranked
0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Additional file 6 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132795
N/A
0DataRank · unranked
0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Additional file 5 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132792
Top 100%
0DataRank
Top 100%0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Additional file 2 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132783
N/A
0DataRank · unranked
0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Mining transcriptomics and clinical data reveals ACE2 expression modulators and identifies cardiomyopathy as a risk factor for mortality in COVID-19 patients

medRxiv(2020)10.1101/2020.10.20.20216150
N/A
0DataRank · unranked
0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Mortality Risk Among Patients With COVID-19 Prescribed Selective Serotonin Reuptake Inhibitor Antidepressants

JAMA Network Open(2021)10.1001/jamanetworkopen.2021.33090
N/A
0DataRank · unranked
139 citations

Ivana Marić, Alice Tang, Boris Oskotsky, Ronald J. Wong, Nima Aghaeepour +3 more

Anticlustering for sample allocation to minimize batch effects

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101137
N/A
0DataRank · unranked
0 citations

Cheng Wang, Maïgane Diop, Syed Bukhari, Boris Oskotsky, Brittany Davidson +12 more

Additional file 8 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132801
N/A
0DataRank · unranked
0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur