S. Gnanakaran

Immunology and MicrobiologyBiochemistry, Genetics and Molecular BiologyPhysics and AstronomyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 29 papers. Top paper: “SARS-CoV-2 variant B.1.1.7 is susceptible to neutralizing antibodies elicited by ancestral spike vaccines”.

SARS-CoV-2 variant B.1.1.7 is susceptible to neutralizing antibodies elicited by ancestral spike vaccines

Cell Host & Microbe(2021)10.1016/j.chom.2021.03.002

N/A

10.9DataRank · unranked

395 citations

Haili Tang, Charlene McDanal, Kshitij Wagh, Will Fischer, James Theiler +12 more

Visualization of the HIV-1 Env glycan shield across scales

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2000260117

N/A

0DataRank · unranked

97 citations

Srirupa Chakraborty, Xiaoning Wang, Christopher A. Cottrell, Jonathan L. Torres, Jolene K. Diedrich +7 more

Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2006504117

N/A

0DataRank · unranked

58 citations

César A. López, Marco Tonelli, Troy Taylor, Ben Niu, Christopher B. Stanley +24 more

Anionic Lipids Impact RAS-Binding Site Accessibility and Membrane Binding Affinity of CRAF RBD-CRD

Biophysical Journal(2020)10.1016/j.bpj.2020.06.021

N/A

0DataRank · unranked

19 citations

César A. López, Constance Agamasu, Jeevapani J. Hettige, Simon Messing, Angel E. Garcı́a +3 more

Quantification of the Resilience and Vulnerability of HIV-1 Native Glycan Shield at Atomistic Detail

iScience(2020)10.1016/j.isci.2020.101836

N/A

0DataRank · unranked

25 citations

Zachary T. Berndsen, Nicolas Hengartner, Bette Korber, Andrew B. Ward, S. Gnanakaran +1 more

The SARS-CoV-2 Spike Variant D614G Favors an Open Conformational State

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.26.219741

N/A

0DataRank · unranked

69 citations

Srirupa Chakraborty, Kien Nguyen, David C. Montefiori, Bette Korber, S. Gnanakaran +1 more

HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens

Cell Host & Microbe(2021)10.1016/j.chom.2021.05.012

N/A

0DataRank · unranked

115 citations

Elena Giorgi, Srirupa Chakraborty, Kien Nguyen, Tanmoy Bhattacharya, James Theiler +51 more

Effects of pH on an IDP conformational ensemble explored by molecular dynamics simulation

Biophysical Chemistry(2021)10.1016/j.bpc.2021.106552

N/A

0DataRank · unranked

40 citations

Rachael A. Mansbach, S. Gnanakaran, Tongye Shen, Richard J. Lindsay

Predictive Rules of Efflux Inhibition and Avoidance in Pseudomonas aeruginosa

mBio(2021)10.1128/mbio.02785-20

N/A

0DataRank · unranked

48 citations

Giuliano Malloci, Rachael A. Mansbach, César A. López, Ruslan Tsivkovski, Keith M. Haynes +17 more

Development of Martini 2.2 parameters forN-glycans: a case study of the HIV-1 Env glycoprotein dynamics

Glycobiology(2021)10.1093/glycob/cwab017

N/A

0DataRank · unranked

18 citations

Kshitij Wagh, S. Gnanakaran, César A. López, Srirupa Chakraborty

Unveiling the Dynamics of KRAS4b on Lipid Model Membranes

The Journal of Membrane Biology(2021)10.1007/s00232-021-00176-z

N/A

0DataRank · unranked

11 citations

Animesh Agarwal, Que N. Van, Andrew G. Stephen, S. Gnanakaran, César A. López

SARS-CoV-2 variant B.1.1.7 is susceptible to neutralizing antibodies elicited by ancestral Spike vaccines

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.27.428516

N/A

0DataRank · unranked

79 citations

Haili Tang, Charlene McDanal, Kshitij Wagh, Will Fischer, James Theiler +13 more

Generalizable coordination of large multiscale workflows

OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)(2021)10.1145/3458817.3476210

N/A

0DataRank · unranked

27 citations

Francesco Di Natale, Joseph Y. Moon, Xiaohua Zhang, Joseph R. Chavez, Fikret Aydin +13 more

Molecular insights into antibody-mediated protection against the prototypic simian immunodeficiency virus

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.22.473937

N/A

0DataRank · unranked

2 citations

Zachary T. Berndsen, Núria Pedreño-López, Alison Burns, Joel D. Allen, Shawn Barman +26 more

Machine learning–driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2113297119

N/A

0DataRank · unranked

87 citations

Chris Neale, Timothy S. Carpenter, Rebika Shrestha, César A. López, Timothy H. Tran +37 more

Exploring CRD mobility during RAS/RAF engagement at the membrane

Biophysical Journal(2022)10.1016/j.bpj.2022.06.035

N/A

0DataRank · unranked

28 citations

César A. López, Chris Neale, Que N. Van, Timothy S. Carpenter, Francesco Di Natale +25 more

Network analysis uncovers the communication structure of SARS-CoV-2 spike protein identifying sites for immunogen design

iScience(2022)10.1016/j.isci.2022.105855

N/A

0DataRank · unranked

17 citations

Srirupa Chakraborty, Rory Henderson, Robert J. Edwards, Rachael A. Mansbach, Kien Nguyen +7 more

A neutralizing antibody target in early HIV-1 infection was recapitulated in rhesus macaques immunized with the transmitted/founder envelope sequence

PLoS Pathogens(2022)10.1371/journal.ppat.1010488

N/A

0DataRank · unranked

6 citations

Srirupa Chakraborty, Jie Yang, Anne Gleinich, Sailaja Gangadhara, Salar N. Khan +27 more

Molecular insights into antibody-mediated protection against the prototypic simian immunodeficiency virus

Nature Communications(2022)10.1038/s41467-022-32783-2

N/A

0DataRank · unranked

10 citations

Zachary T. Berndsen, Núria Pedreño-López, Alison Burns, Joel D. Allen, Shawn Barman +27 more

Acoustic force spectroscopy reveals subtle differences in cellulose unbinding behavior of carbohydrate-binding modules

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2117467119

N/A

0DataRank · unranked

7 citations

Edward V. Contrada, Jonathan E. Ash, Atharv Kulkarni, Jinho Yoon, Hyeon‐Yeol Cho +6 more

High throughput analysis of B cell dynamics and neutralizing antibody development during immunization with a novel clade C HIV-1 envelope

PLoS Pathogens(2023)10.1371/journal.ppat.1011717

N/A

0DataRank · unranked

5 citations

Sarah Welbourn, Tysheena P. Charles, Pooja Ralli-Jain, David Rosales, Samantha L. Burton +10 more

Membrane lipids drive formation of KRAS4b-RAF1 RBDCRD nanoclusters on the membrane

Communications Biology(2024)10.1038/s42003-024-05916-0

N/A

0DataRank · unranked

13 citations

Timothy S. Carpenter, Que N. Van, Constance Agamasu, Marco Tonelli, Fikret Aydin +15 more

Predicting permeation of compounds across the outer membrane of P. aeruginosa using molecular descriptors

Communications Chemistry(2024)10.1038/s42004-024-01161-y

N/A

0DataRank · unranked

9 citations

Inga V. Leus, César A. López, Jitender Mehla, Giuliano Malloci, Silvia Gervasoni +10 more

Insertion and Anchoring of the HIV-1 Fusion Peptide into a Complex Membrane Mimicking the Human T-Cell

The Journal of Physical Chemistry B(2024)10.1021/acs.jpcb.4c05018

N/A

0DataRank · unranked

2 citations

Laura J. S. Lopes, Harshita Sahni, Anju Yadav, N. Hung, Tyler Reddy +4 more

Dynamics and Activation of Membrane-Bound B Cell Receptor Assembly

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.10.602784

N/A

0DataRank · unranked

1 citations

Mingfei Zhao, S. Munir Alam, S. Gnanakaran, N. Hung

Insertion and Anchoring of HIV-1 Fusion Peptide into Complex Membrane Mimicking Human T-cell

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.02.606381

N/A

0DataRank · unranked

0 citations

Laura Joana Silva Lopes, Harshita Sahni, Anju Yadav, N. Hung, Tyler Reddy +4 more

Dynamics and lipid membrane coupling of the RAS-RAF complex revealed via multiscale simulations

Biophysical Journal(2025)10.1016/j.bpj.2025.08.020

N/A

0DataRank · unranked

2 citations

Fikret Aydin, Chris Neale, Que N. Van, Xiaohua Zhang, Harsh Bhatia +35 more

Emergence of SARS-CoV-2 through recombination and strong purifying selection

Science Advances(2020)10.1126/sciadv.abb9153

N/A

0DataRank · unranked

425 citations

Elena Giorgi, Manukumar Honnayakanahalli Marichannegowda, Brian Foley, Chuan Xiao, Xiang‐Peng Kong +5 more

Dynamics and activation of membrane-bound B cell receptor assembly

Communications Biology(2025)10.1038/s42003-025-07478-1

N/A

0DataRank · unranked

0 citations

Mingfei Zhao, S. Munir Alam, S. Gnanakaran, N. Hung