🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Alexander A. Aksenov

OncoMed (United States)

ORCID: 0000-0002-9445-2248

Also affiliated with University of Connecticut, IDEO (United States), UConn Health

Biochemistry, Genetics and Molecular BiologyEngineeringNursingAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
7.6Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Nature Microbiology(2022)10.1038/s41564-022-01266-x
Top 7%
3.0DataRank
Top 7%191 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +89 more

Papers

Driven by 20 papers — median percentile 88. Top paper: “Feature-based molecular networking in the GNPS analysis environment”.

Feature-based molecular networking in the GNPS analysis environment

Nature Methods(2020)10.1038/s41592-020-0933-6
N/A
10.9DataRank · unranked
1581 citations

Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli +57 more

Reproducible molecular networking of untargeted mass spectrometry data using GNPS

Nature Protocols(2020)10.1038/s41596-020-0317-5
N/A
10.3DataRank · unranked
718 citations

Emily C. Gentry, Kerry L. McPhail, Louis‐Félix Nothias, Mélissa Nothias-Esposito, Amina Bouslimani +37 more

Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

Nature Communications(2021)10.1038/s41467-021-23953-9
N/A
6.7DataRank · unranked
328 citations

Daniel Petras, Louis‐Félix Nothias, Mingxun Wang, Allegra T. Aron, Annika Jagels +40 more

Mass spectrometry searches using MASST

Nature Biotechnology(2020)10.1038/s41587-019-0375-9
N/A
6.2DataRank · unranked
298 citations

Alan K. Jarmusch, Fernando Vargas, Alexander A. Aksenov, Julia M. Gauglitz, Kelly C. Weldon +31 more

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Nature Microbiology(2022)10.1038/s41564-022-01266-x
Top 7%
3.0DataRank
Top 7%191 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +89 more

A community resource for paired genomic and metabolomic data mining

Nature Chemical Biology(2021)10.1038/s41589-020-00724-z
Top 9%
2.5DataRank
Top 9%131 citations

Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa Acharya, Alexander A. Aksenov +95 more

Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics

Nature Communications(2023)10.1038/s41467-023-44035-y
Top 15%
1.4DataRank
Top 15%82 citations

Nicole E. Avalon, Sydney P. Thomas, Sarvar A. Kakhkhorov, Alexander A. Aksenov, Paulo Wender Portal Gomes +27 more

Global chemical effects of the microbiome include new bile-acid conjugations

Nature(2020)10.1038/s41586-020-2047-9
N/A
0.959DataRank · unranked
595 citations

Alexey V. Melnik, Alison Vrbanac, Ting Fu, Kathryn A. Patras, Mitchell P. Christy +53 more

Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

Nature Biotechnology(2020)10.1038/s41587-020-0700-3
N/A
0.769DataRank · unranked
167 citations

Ivan Laponogov, Zheng Zhang, Sophie Doran, Ilaria Belluomo, Dennis A. Veselkov +65 more

ReDU: a framework to find and reanalyze public mass spectrometry data

Nature Methods(2020)10.1038/s41592-020-0916-7
N/A
0.745DataRank · unranked
143 citations

Mingxun Wang, Christine M. Aceves, Rohit S. Advani, Shaden Aguirre, Alexander A. Aksenov +39 more

Open Access Repository-Scale Propagated Nearest Neighbor Suspect Spectral Library for Untargeted Metabolomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.15.490691
Top 33%
0.597DataRank
Top 33%28 citations

Nicole E. Avalon, Sydney P. Thomas, Sarvar A. Kakhkhorov, Alexander A. Aksenov, Paulo Wender Portal Gomes +27 more

Mammalian gut metabolomes mirror microbiome composition and host phylogeny

The ISME Journal(2021)10.1038/s41396-021-01152-0
N/A
0.557DataRank · unranked
40 citations

Maraike Probst, Stav Eyal, Alexander A. Aksenov, Goor Sasson, Igal Horovitz +4 more

Ion Identity Molecular Networking in the GNPS Environment

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.11.088948
N/A
0.477DataRank · unranked
23 citations

Daniel Petras, Louis‐Félix Nothias, Mingxun Wang, Allegra T. Aron, Annika Jagels +40 more

The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin

mSystems(2023)10.1128/msystems.00922-22
N/A
0.381DataRank · unranked
8 citations

Chris Callewaert, Kathleen Dorrestein, Rosie Broadhead, Jeremiah J. Minich, Madeleine Ernst +7 more

Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.04.446988
N/A
0.330DataRank · unranked
8 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +45 more

The molecular impact of life in an indoor environment

ChemRxiv(2021)10.26434/chemrxiv-2021-nk5cr
N/A
0.104DataRank · unranked
1 citations

Rodolfo A. Salido, Alexey V. Melnik, Caitriona Brennan, Asker Brejnrod, Andrés Mauricio Caraballo‐Rodríguez +7 more

Protocol for constructing correlation-based molecular networks from large-scale untargeted metabolomics data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.26.649581
N/A
0DataRank · unranked
0 citations

Lijun Zhang, Ali Lotfi, Alan K. Jarmusch, Iris Lee, Adam Kim +3 more

Fungal–bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds

Communications Biology(2020)10.1038/s42003-020-01342-0
N/A
0DataRank · unranked
42 citations

Daniel Petras, Romina A. Tobares, Alexander A. Aksenov, Mingxun Wang, Florencia Juncosa +5 more

Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry

Nature Communications(2023)10.1038/s41467-023-40741-9
N/A
0DataRank · unranked
19 citations

Stephany Flores Ramos, Julia M. Gauglitz, Anne-Marie Fassler, Daniel Petras, Alexander A. Aksenov +10 more

Pre- and Post-Portosystemic Shunt Placement Metabolomics Reveal Molecular Signatures for the Development of Hepatic Encephalopathy

medRxiv(2023)10.1101/2023.01.02.22281374
N/A
0DataRank · unranked
1 citations

Stephany Flores Ramos, Julia M. Gauglitz, Anne‐Marie Carpenter, Daniel Petras, Alexander A. Aksenov +10 more