🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jie Liu

University of Michigan

ORCID: 0000-0002-9504-0587

Also affiliated with Institute of Bioinformatics

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.7Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

GenomicKB: a knowledge graph for the human genome

Nucleic Acids Research(2022)10.1093/nar/gkac957

Top 14%

1.5DataRank

Top 14%41 citations

Feitong Tang, Yijia Gao, Dongyu Zhu, Tianjun Li, Shuyuan Yang +4 more

Papers

Driven by 15 papers — median percentile 62. Top paper: “GenomicKB: a knowledge graph for the human genome”.

GenomicKB: a knowledge graph for the human genome

Nucleic Acids Research(2022)10.1093/nar/gkac957

Top 14%

1.5DataRank

Top 14%41 citations

Feitong Tang, Yijia Gao, Dongyu Zhu, Tianjun Li, Shuyuan Yang +4 more

The IGVF catalog—from genetic variation to function

Nucleic Acids Research(2025)10.1093/nar/gkaf1341

Top 63%

0.219DataRank

Top 63%3 citations

Shane Liu, Pedro Assis, Mingjie Li, Shengcheng Dong, Ian Whaling +42 more

NucleoMap: a computational tool for identifying nucleosomes in ultra-high resolution contact maps

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.15.468663

N/A

0DataRank · unranked

0 citations

Bingjiang Wang, Jie Liu, Yuanhao Huang

Connecting high-resolution 3D chromatin organization with epigenomics

Nature Communications(2022)10.1038/s41467-022-29695-6

N/A

0DataRank · unranked

27 citations

Yuan Yao, Xue Qing David Wang, Xiaotian Zhang, Jie Liu, Fan Feng

NucleoMap: A computational tool for identifying nucleosomes in ultra-high resolution contact maps

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010265

N/A

0DataRank · unranked

1 citations

Bingjiang Wang, Jie Liu, Yuanhao Huang

A generalizable framework to comprehensively predict epigenome, chromatin organization, and transcriptome

Nucleic Acids Research(2023)10.1093/nar/gkad436

N/A

0DataRank · unranked

41 citations

Fan Feng, Yiyang Qiu, Jie Liu, Zhenhao Zhang

CNTools: A computational toolbox for cellular neighborhood analysis from multiplexed images

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012344

N/A

0DataRank · unranked

7 citations

Fan Feng, Xin Luo, Conrad Reihsmann, Alexander L. Hopkirk, Jeeyeon Cha +5 more

Effect of Jardiance on glucose uptake into astrocytomas

Journal of Neuro-Oncology(2024)10.1007/s11060-024-04746-8

N/A

0DataRank · unranked

3 citations

Benjamin M. Ellingson, Albert Lai, Jie Liu, Jorge R. Barrio, Ernest M. Wright +1 more

Abnormal Colorectal Cancer Test Follow-Up: A Quality Improvement Initiative at a Federally Qualified Health Center

Journal of Primary Care & Community Health(2024)10.1177/21501319241242571

N/A

0DataRank · unranked

1 citations

Balambal Bharti, Felipe Garcia‐Bigley, Mónica Hernández, Jesse Nodora, Jie Liu +8 more

Developing a general AI model for integrating diverse genomic modalities and comprehensive genomic knowledge

Nucleic Acids Research(2025)10.1093/nar/gkaf1269

N/A

0DataRank · unranked

1 citations

Xinyu Bao, Linghua Jiang, Xin Luo, Zheyu Zhang, Jing Yin +8 more

CelLink: integrating single-cell multi-omics data with weak feature linkage and imbalanced cell populations

Nucleic Acids Research(2025)10.1093/nar/gkaf1270

N/A

0DataRank · unranked

1 citations

Yuanhao Huang, Haoxuan Zeng, Yicheng Tao, Xinyu Bao, Fan Feng +13 more

Genome structure mapping with high-resolution 3D genomics and deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.06.650874

N/A

0DataRank · unranked

9 citations

Fan Feng, V. D. Ramanathan, Jie Liu, Anders S. Hansen, Clarice KY Hong

Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008173

N/A

0DataRank · unranked

108 citations

Galip Gürkan Yardımcı, Giancarlo Bonora, Vijay Ramani, Jie Liu, Ruolan Qiu +7 more

Quantification of the neuropathology of alcohol use disorder using tissue microarrays

Journal of Neuropathology & Experimental Neurology(2025)10.1093/jnen/nlaf147

N/A

0DataRank · unranked

0 citations

Matthew J Catanzariti, Huang-Tuong Nguyen-Hao, M.G. Novelli, Dhiraj Maskey, Caine C. Smith +5 more

Connecting high-resolution 3D chromatin organization with epigenomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.13.338004

N/A

0DataRank · unranked

4 citations

Yuan Yao, Xue Qing David Wang, Xiaotian Zhang, Jie Liu, Fan Feng