🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Tian Cai

The Graduate Center, CUNY

ORCID: 0000-0002-9516-6489

Also affiliated with City University of New York

Computer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 6 papers. Top paper: “End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins”.

End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins

PLOS Computational Biology(2023)10.1371/journal.pcbi.1010851
N/A
0.793DataRank · unranked
21 citations

Li Xie, Shuo Zhang, Muge Chen, Di He, Amitesh Badkul +8 more

Large-scale genomic survey with deep learning-based method reveals strain-level phage specificity determinants

GigaScience(2024)10.1093/gigascience/giae017
N/A
0.631DataRank · unranked
22 citations

Keith Dufault‐Thompson, Wei Yan, Tian Cai, Lei Xie, Xiaofang Jiang +1 more

Exploration of Dark Chemical Genomics Space via Portal Learning: Applied to Targeting the Undruggable Genome and COVID-19 Anti-Infective Polypharmacology

Research Square(2021)10.21203/rs.3.rs-1109318/v1
N/A
0.348DataRank · unranked
5 citations

Li Xie, Muge Chen, Yang Liu, Di He, Shuo Zhang +4 more

A deep learning framework for elucidating whole-genome chemical interaction space

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.08.332346
N/A
0DataRank · unranked
3 citations

Hansaim Lim, Kyra Alyssa Abbu, Yue Qiu, Ruth Nussinov, Lei Xie +1 more

MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphanization

Journal of Chemical Information and Modeling(2021)10.1021/acs.jcim.0c01285
N/A
0DataRank · unranked
29 citations

Hansaim Lim, Kyra Alyssa Abbu, Yue Qiu, Ruth Nussinov, Lei Xie +1 more

Deciphering Phage-Host Specificity Based on the Association of Phage Depolymerases and Bacterial Surface Glycan with Deep Learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.16.545366
N/A
0DataRank · unranked
5 citations

Keith Dufault‐Thompson, Wei Yan, Tian Cai, Lei Xie, Xiaofang Jiang +1 more