🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Luca Freschi

European Centre for Disease Prevention and Control

ORCID: 0000-0002-9566-1420
MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 7%percentile
0.165Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Estimation of country-specific tuberculosis antibiograms using genomic data

medRxiv(2021)10.1101/2021.09.23.21263991
Top 70%
0.165DataRank
Top 70%2 citations

Luca Freschi, Roger Vargas, Matthias Groeschel, Sabira Tahseen, Sk Mahbub Alam +7 more

Papers

Driven by 11 papers — median percentile 30. Top paper: “Role of Epistasis in Amikacin, Kanamycin, Bedaquiline, and Clofazimine Resistance in Mycobacterium tuberculosis Complex”.

Role of Epistasis in Amikacin, Kanamycin, Bedaquiline, and Clofazimine Resistance in Mycobacterium tuberculosis Complex

Antimicrobial Agents and Chemotherapy(2021)10.1128/aac.01164-21
N/A
0.641DataRank · unranked
71 citations

Luca Freschi, Andrea Spitaleri, Sabira Tahseen, Ivan Barilar, Stefan Niemann +5 more

The role of epistasis in amikacin, kanamycin, bedaquiline, and clofazimine resistance in Mycobacterium tuberculosis complex

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.07.443178
N/A
0.454DataRank · unranked
6 citations

Luca Freschi, Andrea Spitaleri, Sabira Tahseen, Ivan Barilar, Stefan Niemann +5 more

Estimation of country-specific tuberculosis antibiograms using genomic data

medRxiv(2021)10.1101/2021.09.23.21263991
Top 70%
0.165DataRank
Top 70%2 citations

Luca Freschi, Roger Vargas, Matthias Groeschel, Sabira Tahseen, Sk Mahbub Alam +7 more

The discovery of genome-wide mutational dependence in naturally evolving populations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.24.497504
N/A
0.104DataRank · unranked
1 citations

Roger Vargas, Maximillian G. Marin, Luca Freschi, Jiaqi Xie, Maha R. Farhat +1 more

Modern lineages of Mycobacterium tuberculosis were recently introduced in western India and demonstrate increased transmissibility

medRxiv(2022)10.1101/2022.01.04.22268645
N/A
0DataRank · unranked
2 citations

Anju Kagal, Yasha Ektefaie, Luca Freschi, Rajesh Karyakarte, Rahul Lokhande +14 more

Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2301394120
N/A
0DataRank · unranked
37 citations

Michael J. Luna, Luca Freschi, Maximillian G. Marin, Ruby Froom, Kenan C. Murphy +5 more

GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning

Genome Medicine(2021)10.1186/s13073-021-00953-4
N/A
0DataRank · unranked
76 citations

Martin Owens, Luca Freschi, Roger Vargas, Maximilian G. Marin, Jody Phelan +4 more

Drug Resistance and Epidemiological Success of Modern Mycobacterium tuberculosis Lineages in Western India

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae240
N/A
0DataRank · unranked
5 citations

Yasha Ektefaie, Anju Kagal, Luca Freschi, Rajesh Karyakarte, Rahul Lokhande +14 more

In-host population dynamics of Mycobacterium tuberculosis complex during active disease

eLife(2021)10.7554/elife.61805
N/A
0DataRank · unranked
67 citations

Luca Freschi, Maximillian G. Marin, L. Elaine Epperson, Melissa Smith, Irina Oussenko +5 more

Globally diverse Mycobacterium tuberculosis resistance acquisition: a retrospective geographical and temporal analysis of whole genome sequences

The Lancet Microbe(2021)10.1016/s2666-5247(20)30195-6
N/A
0DataRank · unranked
61 citations

Avika Dixit, Luca Freschi, Maha R. Farhat, Yasha Ektefaie

A convolutional neural network highlights mutations relevant to antimicrobial resistance in Mycobacterium tuberculosis

Nature Communications(2022)10.1038/s41467-022-31236-0
N/A
0DataRank · unranked
84 citations

Chang Ho Yoon, Michael L. Chen, Yasha Ektefaie, Mack Fina, Luca Freschi +5 more