Ruedi Aebersold

Also affiliated with ETH Zurich

ChemistryBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

14.2Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics

Nature Biotechnology(2007)10.1038/nbt1347

Top 3%

6.0DataRank

Top 3%106 citations

Michael Miller, Ruedi Aebersold, Rolf Apweiler, On behalf of the MGED Society, Ann-Christine Syvanen +24 more

Papers

Driven by 34 papers — median percentile 85. Top paper: “openBIS: a flexible framework for managing and analyzing complex data in biology research”.

openBIS: a flexible framework for managing and analyzing complex data in biology research

BMC Bioinformatics(2011)10.1186/1471-2105-12-468

N/A

8.0DataRank · unranked

155 citations

Izabela Adamczyk, Piotr Buczek, Franz-Josef Elmer, Kaloyan Enimanev, Pawel Glyzewski +10 more

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics

Nature Biotechnology(2007)10.1038/nbt1347

Top 3%

6.0DataRank

Top 3%106 citations

Michael Miller, Ruedi Aebersold, Rolf Apweiler, On behalf of the MGED Society, Ann-Christine Syvanen +24 more

A high-stringency blueprint of the human proteome

Nature Communications(2020)10.1038/s41467-020-19045-9

Top 6%

3.9DataRank

Top 6%217 citations

Edouard C. Nice, Eric W. Deutsch, Lydie Lane, Gilbert S. Omenn, Stephen R. Pennington +41 more

Proteomics studies confirm the presence of alternative protein isoforms on a large scale

Genome Biology(2008)10.1186/gb-2008-9-11-r162

N/A

3.3DataRank · unranked

69 citations

Bernd Bodenmiller, Ruedi Aebersold, Alfonso Valencia, Michael L Tress

The 2022 Report on the Human Proteome from the HUPO Human Proteome Project

Journal of Proteome Research(2022)10.1021/acs.jproteome.2c00498

Top 14%

1.5DataRank

Top 14%60 citations

Lydie Lane, Christopher M. Overall, Charles Pineau, Nicolle H. Packer, Ileana M. Cristea +13 more

Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project

Journal of Proteome Research(2021)10.1021/acs.jproteome.1c00590

Top 16%

1.3DataRank

Top 16%44 citations

Lydie Lane, Christopher M. Overall, Young‐Ki Paik, Ileana M. Cristea, Fernando J. Corrales +11 more

The 2023 Report on the Proteome from the HUPO Human Proteome Project

Journal of Proteome Research(2024)10.1021/acs.jproteome.3c00591

Top 19%

1.1DataRank

Top 19%28 citations

Lydie Lane, Christopher M. Overall, Cecilia Lindskog, Charles Pineau, Nicolle H. Packer +13 more

The 2024 Report on the Human Proteome from the HUPO Human Proteome Project

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00776

Top 34%

0.585DataRank

Top 34%26 citations

Sandra Orchard, Lydie Lane, Cecilia Lindskog, Charles Pineau, Christopher M. Overall +15 more

Rv1985c-Driven Transcriptional Network Rewiring Underlies Lineage-Specific Phenotypes in Mycobacterium tuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.14.943365

N/A

0DataRank · unranked

2 citations

Sònia Borrell, Andrej Trauner, Sebastian M. Gygli, Tige R. Rustad, Julia Feldmann +8 more

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions

Molecular Systems Biology(2021)10.15252/msb.20209536

N/A

0DataRank · unranked

161 citations

Zhongge Zhang, Amir Banaei‐Esfahani, Jean‐Benoît Lalanne, Hiroyuki Okano, Ben C. Collins +8 more

Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

Molecular Systems Biology(2021)10.15252/msb.202110240

N/A

0DataRank · unranked

159 citations

Chloe H. Lee, Evan G. Williams, Tatjana Sajic, Ben C. Collins, María Rodríguez Martínez +8 more

Multiomic profiling of the liver across diets and age in a diverse mouse population

Cell Systems(2021)10.1016/j.cels.2021.09.005

N/A

0DataRank · unranked

54 citations

Niklas Pfister, Suheeta Roy, Cyril Statzer, Jack Haverty, Jesse Ingels +10 more

Structural and functional dissection of reovirus capsid folding and assembly by the prefoldin-TRiC/CCT chaperone network

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2018127118

N/A

0DataRank · unranked

46 citations

Daniel R. Gestaut, Boxue Ma, Gwen M. Taylor, Alpay B. Seven, Alexander Leitner +9 more

Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance

Antimicrobial Agents and Chemotherapy(2021)10.1128/aac.00504-21

N/A

0DataRank · unranked

24 citations

Amir Banaei‐Esfahani, Sebastian M. Gygli, Philipp Warmer, Julia Feldmann, Mattia Zampieri +6 more

Phenotypic characterization of two novel cell line models of castration‐resistant prostate cancer

The Prostate(2021)10.1002/pros.24210

N/A

0DataRank · unranked

16 citations

Akshay Bhamidipati, Harrison Tsai, David Esopi, Ajay Vaghasia, Jin‐Yih Low +12 more

Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.24.445329

N/A

0DataRank · unranked

22 citations

Matteo Mori, Igor Šegota, Zhongge Zhang, Ruedi Aebersold, Christina Ludwig +2 more

PHENOTYPIC CHARACTERIZATION OF TWO NOVEL CELL LINE MODELS OF CASTRATION RESISTANT PROSTATE CANCER

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.04.450352

N/A

0DataRank · unranked

3 citations

Akshay Bhamidipati, Harrison Tsai, David Esopi, Ajay Vaghasia, Jin‐Yih Low +12 more

Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization

The Journal of Cell Biology(2022)10.1083/jcb.202204039

N/A

0DataRank · unranked

29 citations

Rahel Wettstein, Joseph M. Varberg, Keerthana Chetlapalli, Madison E. Walsh, Ludovic Gillet +7 more

7q11.23 CNV alters protein synthesis and REST-mediated neuronal intrinsic excitability

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.10.511483

N/A

0DataRank · unranked

9 citations

Pierre‐Luc Germain, Reinald Shyti, Davide Pozzi, Roberta Noberini, Yansheng Liu +22 more

Meiotic Nuclear Pore Complex Remodeling Provides Key Insights into Nuclear Basket Organization

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.14.488376

N/A

0DataRank · unranked

2 citations

Rahel Wettstein, Joseph M. Varberg, Keerthana Chetlapalli, Madison E. Walsh, Ludovic Gillet +7 more

Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves

Nature Microbiology(2023)10.1038/s41564-022-01310-w

N/A

0DataRank · unranked

54 citations

Matteo Mori, Miriam Abele, Amir Banaei‐Esfahani, Zhongge Zhang, Hiroyuki Okano +4 more

M. tuberculosis relies on trace oxygen to maintain energy homeostasis and survive in hypoxic environments

Cell Reports(2023)10.1016/j.celrep.2023.112444

N/A

0DataRank · unranked

49 citations

Samsher Singh, Kiel Hards, Chen‐Yi Cheung, Ekaterina Sviriaeva, Amir Banaei‐Esfahani +4 more

Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100602

N/A

0DataRank · unranked

20 citations

Weigang Ge, Yi Zhu, Azin Sayad, Augustin Luna, Mengge Lyu +17 more

A computational framework for the inference of protein complex remodeling from whole-proteome measurements

Nature Methods(2023)10.1038/s41592-023-02011-w

N/A

0DataRank · unranked

18 citations

Amir Banaei‐Esfahani, Peter Blattmann, Fabienne Meier‐Abt, Wenguang Shao, Olga Vitek +3 more

Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans

Nature Communications(2024)10.1038/s41467-023-44409-2

N/A

0DataRank · unranked

45 citations

Cyril Statzer, Anita Goyala, Seraina A. Domenig, Ingmar Schoen, M. W. Hess +7 more

π-HuB: the proteomic navigator of the human body

Nature(2024)10.1038/s41586-024-08280-5

N/A

0DataRank · unranked

45 citations

Ruedi Aebersold, Mark S. Baker, Xiu‐Wu Bian, Xiaochen Bo, Daniel W. Chan +95 more

Complex Assembly and Activity States as Multifaceted Protein Attributes Explaining Phenotypic Variability

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.25.678633

N/A

0DataRank · unranked

0 citations

Peng Xue, Isabell Bludau, Claudia Martelli, Evan G. Williams, Ben C. Collins +4 more

A Conserved Mito-Cytosolic Translational Balance Links Two Longevity Pathways

Cell Metabolism(2020)10.1016/j.cmet.2020.01.011

N/A

0DataRank · unranked

129 citations

Georges E. Janssens, Evan G. Williams, Aldo Jongejan, Jiayi Lan, Sylvie Rabot +13 more

Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes

Nature Protocols(2020)10.1038/s41596-020-0332-6

N/A

0DataRank · unranked

71 citations

Moritz Heusel, Max Frank, George Rosenberger, Robin Hafen, Amir Banaei‐Esfahani +5 more

SECAT: Quantifying Protein Complex Dynamics across Cell States by Network-Centric Analysis of SEC-SWATH-MS Profiles

Cell Systems(2020)10.1016/j.cels.2020.11.006

N/A

0DataRank · unranked

47 citations

Moritz Heusel, Isabell Bludau, Ben C. Collins, Claudia Martelli, Evan G. Williams +5 more

Mitochondrial translation and dynamics synergistically extend lifespan in C. elegans through HLH-30

The Journal of Cell Biology(2020)10.1083/jcb.201907067

N/A

0DataRank · unranked

50 citations

Rebecca L. McIntyre, Georges E. Janssens, Evan G. Williams, Jiayi Lan, Michel van Weeghel +9 more

The Polyglutamine Expansion at the N-Terminal of Huntingtin Protein Modulates the Dynamic Configuration and Phosphorylation of the C-Terminal HEAT Domain

Structure(2020)10.1016/j.str.2020.06.008

N/A

0DataRank · unranked

41 citations

Baehyun Shin, Giorgio E. Tamò, Hyeongju Kim, Ravi Vijayvargia, Alexander Leitner +9 more

Orthogonal Proteomic Platforms and Their Implications for the Stable Classification of High-Grade Serous Ovarian Cancer Subtypes

iScience(2020)10.1016/j.isci.2020.101079

N/A

0DataRank · unranked

36 citations

Betty Friedrich, Michael Schnaubelt, Daniel W. Chan, Hui Zhang, Ruedi Aebersold +1 more

Multi-Omic Profiling of the Liver Across Diets and Age in a Diverse Mouse Population

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.20.222968

N/A

0DataRank · unranked

11 citations

Niklas Pfister, Suheeta Roy, Cyril Statzer, Jack Haverty, Jesse Ingels +10 more

Ruedi Aebersold

Indexed papers

Top data-sharing exemplar

Papers