Lyle A. Simmons

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “Methyltransferase DnmA is responsible for genome-wide N6-methyladenosine modifications at non-palindromic recognition sites in Bacillus subtilis”.

Methyltransferase DnmA is responsible for genome-wide N6-methyladenosine modifications at non-palindromic recognition sites in Bacillus subtilis

Nucleic Acids Research(2020)10.1093/nar/gkaa266

N/A

1.1DataRank · unranked

37 citations

Lieke A. van Gijtenbeek, Amanda G Stevens, Jeremy W. Schroeder, Justin R. Randall, Lindsay A. Matthews +2 more

Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB

Nucleic Acids Research(2024)10.1093/nar/gkae308

N/A

0.188DataRank · unranked

2 citations

Lia M Munson, Jayakrishnan Nandakumar, Lyle A. Simmons, Kelly A. Manthei

Regulation of DNA Binding and High-Order Oligomerization of the DnaB Helicase Loader

Journal of Bacteriology(2020)10.1128/jb.00286-20

N/A

0DataRank · unranked

6 citations

Lyle A. Simmons, Lindsay A. Matthews

RnhP is a plasmid‐borne RNase HI that contributes to genome maintenance in the ancestral strain Bacillus subtilis NCIB 3610

Molecular Microbiology(2020)10.1111/mmi.14601

N/A

0DataRank · unranked

6 citations

Emma K. McLean, Andrew M. Burrage, Devon Dennison, Daniel B. Kearns, Lyle A. Simmons +1 more

Distinct heterochromatin‐like domains promote transcriptional memory and silence parasitic genetic elements in bacteria

The EMBO Journal(2021)10.15252/embj.2021108708

N/A

0DataRank · unranked

29 citations

Thomas J. Goss, Taylor M. Nye, Rebecca L. Hurto, Lyle A. Simmons, Peter L. Freddolino +1 more

Hydroxyurea Induces a Stress Response That Alters DNA Replication and Nucleotide Metabolism in Bacillus subtilis

Journal of Bacteriology(2021)10.1128/jb.00171-21

N/A

0DataRank · unranked

26 citations

Lyle A. Simmons, Katherine J. Wozniak

RecA Is Required for the Assembly of RecN into DNA Repair Complexes on the Nucleoid

Journal of Bacteriology(2021)10.1128/jb.00240-21

N/A

0DataRank · unranked

21 citations

Justin S. Lenhart, Lyle A. Simmons, Emma K. McLean

The Impact of RNA-DNA Hybrids on Genome Integrity in Bacteria

Annual Review of Microbiology(2022)10.1146/annurev-micro-102521-014450

N/A

0DataRank · unranked

10 citations

Taylor M. Nye, Frances Caroline Lowder, Lyle A. Simmons, Emma K. McLean

The Bacillus subtilis PriA Winged Helix Domain Is Critical for Surviving DNA Damage

Journal of Bacteriology(2022)10.1128/jb.00539-21

N/A

0DataRank · unranked

6 citations

Lyle A. Simmons, Lindsay A. Matthews

Structure and kinase activity of bacterial cell cycle regulator CcrZ

PLoS Genetics(2022)10.1371/journal.pgen.1010196

N/A

0DataRank · unranked

5 citations

Peter E. Burby, Jayakrishnan Nandakumar, Lyle A. Simmons, Katherine J. Wozniak

Diverse Mechanisms of Helicase Loading during DNA Replication Initiation in Bacteria

Journal of Bacteriology(2023)10.1128/jb.00487-22

N/A

0DataRank · unranked

18 citations

Lyle A. Simmons, Christina L. Stallings, Helen C. Blaine

Bacillus subtilis encodes a discrete flap endonuclease that cleaves RNA-DNA hybrids

PLoS Genetics(2023)10.1371/journal.pgen.1010585

N/A

0DataRank · unranked

14 citations

Lyle A. Simmons, Frances Caroline Lowder

DNA Methylation and RNA-DNA Hybrids Regulate the Single-Molecule Localization of a DNA Methyltransferase on the Bacterial Nucleoid

mBio(2023)10.1128/mbio.03185-22

N/A

0DataRank · unranked

11 citations

Ziyuan Chen, David E.H. Fuller, Lieke A. van Gijtenbeek, Taylor M. Nye, Julie S. Biteen +2 more

RNase H genes cause distinct impacts on RNA:DNA hybrid formation and mutagenesis genome-wide

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.08.539860

N/A

0DataRank · unranked

0 citations

Rebecca L. Hurto, Justin R. Randall, Katherine J. Wozniak, Taylor A. Timko, Taylor M. Nye +4 more

DNA replication initiation timing is important for maintaining genome integrity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.18.599555

N/A

0DataRank · unranked

1 citations

Abigail H. Kendal, Katherine J. Wozniak, Lyle A. Simmons, T. Reed

Two Distinct Regulatory Systems Control Pulcherrimin Biosynthesis in Bacillus subtilis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.03.574033

N/A

0DataRank · unranked

0 citations

Lyle A. Simmons, Nicolas L. Fernandez

Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.15.580553

N/A

0DataRank · unranked

0 citations

Lia M Munson, Jayakrishnan Nandakumar, Lyle A. Simmons, Kelly A. Manthei

DNA replication initiation timing is important for maintaining genome integrity

Journal of Bacteriology(2025)10.1128/jb.00175-25

N/A

0DataRank · unranked

3 citations

Abigail H. Kendal, Katherine J. Wozniak, Lyle A. Simmons, Tristan T. Reed

TlyA is a 23S and 16S 2′-O-methylcytidine methyltransferase important for ribosome assembly in Bacillus subtilis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.21.649808

N/A

0DataRank · unranked

2 citations

Lia M Munson, Joshua D. Jones, Taylor M. Nye, Kristin S. Koutmou, Lyle A. Simmons +1 more

DNA polymerase I is an efficient reverse transcriptase that mediates RNA-templated DNA repair synthesis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.22.696026

N/A

0DataRank · unranked

2 citations

Abigail H. Kendal, Lyle A. Simmons, Frances Caroline Lowder

The roles of replication-transcription conflict in mutagenesis and evolution of genome organization

PLoS Genetics(2020)10.1371/journal.pgen.1008987

N/A

0DataRank · unranked

35 citations

Tejas Sankar, Jue D. Wang, Lyle A. Simmons, Jeremy W. Schroeder