John R. Lee

Also affiliated with Cornell University, Presbyterian Hospital, Weill Cornell Medicine, University of Pennsylvania

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “Urinary cell transcriptomics and acute rejection in human kidney allografts”.

Urinary cell transcriptomics and acute rejection in human kidney allografts

JCI Insight(2020)10.1172/jci.insight.131552

N/A

0.945DataRank · unranked

47 citations

Thangamani Muthukumar, Hua Yang, Michelle Lubetzky, Michael F. Cassidy, John R. Lee +13 more

Detection of infiltrating fibroblasts by single-cell transcriptomics in human kidney allografts

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.03.281733

N/A

0.467DataRank · unranked

8 citations

Hua Yang, Michelle Lubetzky, Pavel Morozov, Mila Lagman, Gaurav Thareja +15 more

Metagenomics Combined with Activity-Based Proteomics Point to Gut Bacterial Enzymes that Reactivate Mycophenolate

medRxiv(2022)10.1101/2022.05.19.22274720

N/A

0.292DataRank · unranked

6 citations

Josh J. Sekela, Amanda L. Graboski, Valentina Borlandelli, Natalie K. Barker, Alicia A. Sorgen +10 more

The Gut Microbiome and Symptom Burden After Kidney Transplantation: An Overview and Research Opportunities

Biological Research For Nursing(2024)10.1177/10998004241256031

N/A

0.208DataRank · unranked

3 citations

Choa Sung, Suzanne Alvernaz, John R. Lee, Jennifer L. Chin, Mehdi Nayebpour +10 more

Deep sequencing of DNA from urine of kidney allograft recipients to estimate the donor-specific DNA fraction

medRxiv(2020)10.1101/2020.12.13.20248118

N/A

0DataRank · unranked

0 citations

Gaurav Thareja, Darshana M. Dadhania, John R. Lee, Thangamani Muthukumar, Catherine Snopkowski +8 more

Measurement Biases Distort Cell-Free DNA Fragmentation Profiles and Define the Sensitivity of Metagenomic Cell-Free DNA Sequencing Assays

Clinical Chemistry(2021)10.1093/clinchem/hvab142

N/A

0DataRank · unranked

19 citations

Omary Mzava, Joan Sesing Lenz, Alexandre Pellan Cheng, Philip Burnham, S. Timothy Motley +8 more

Colonization with Gastrointestinal Pathogens Prior to Hematopoietic Cell Transplantation and Associated Clinical Implications

Transplantation and Cellular Therapy(2021)10.1016/j.jtct.2021.02.012

N/A

0DataRank · unranked

8 citations

Emily Davidson, Rosemary Soave, Rosy Priya Kodiyanplakkal, Amy Robertson, Koen van Besien +5 more

A metagenomic DNA sequencing assay that is robust against environmental DNA contamination

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.22.469599

N/A

0DataRank · unranked

4 citations

Alexandre Pellan Cheng, Adrienne Chang, Sami Smalling, Liz-Audrey Djomnang Kounatse, Joan Sesing Lenz +9 more

Deep sequencing of DNA from urine of kidney allograft recipients to estimate donor/recipient-specific DNA fractions

PLoS ONE(2021)10.1371/journal.pone.0249930

N/A

0DataRank · unranked

0 citations

Gaurav Thareja, Darshana M. Dadhania, John R. Lee, Thangamani Muthukumar, Catherine Snopkowski +9 more

Metagenomics combined with activity-based proteomics point to gut bacterial enzymes that reactivate mycophenolate

Gut Microbes(2022)10.1080/19490976.2022.2107289

N/A

0DataRank · unranked

39 citations

Josh J. Sekela, Amanda L. Graboski, Valentina Borlandelli, Marissa M. Bivins, Natalie K. Barker +10 more

A metagenomic DNA sequencing assay that is robust against environmental DNA contamination

Nature Communications(2022)10.1038/s41467-022-31654-0

N/A

0DataRank · unranked

34 citations

Alexandre Pellan Cheng, Adrienne Chang, Sami Smalling, Liz-Audrey Djomnang Kounatse, Joan Sesing Lenz +12 more

Detection of infiltrating fibroblasts by single-cell transcriptomics in human kidney allografts

PLoS ONE(2022)10.1371/journal.pone.0267704

N/A

0DataRank · unranked

29 citations

Hua Yang, Michelle Lubetzky, Pavel Morozov, Mila Lagman, Gaurav Thareja +15 more

KIBRA upregulation increases susceptibility to podocyte injury and glomerular disease progression

JCI Insight(2023)10.1172/jci.insight.165002

N/A

0DataRank · unranked

9 citations

Yanfeng Yang, Marina de Cos, Estefania Rodriguez Ballestas, Caroline Malkin, Jonathan C. Haydak +12 more

SurvBal: Compositional Microbiome Balances for Survival Outcomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.22.559069

N/A

0DataRank · unranked

0 citations

Teresa Lee, Kai Marin, Xing Hua, Sujatha Srinivasan, David N. Fredricks +3 more

A quantitative comparison of urine centrifugation and filtration for the isolation and analysis of urinary nucleic acid biomarkers

Scientific Reports(2024)10.1038/s41598-024-54239-x

N/A

0DataRank · unranked

6 citations

Carol Li, Omary Mzava, Alexandre Pellan Cheng, Adrienne Chang, Joan Sesing Lenz +5 more

Metagenomics combined with activity-based proteomics point to gut bacterial enzymes that reactivate mycophenolate

UNC Libraries(2024)10.17615/ed42-4g87

N/A

0DataRank · unranked

0 citations

Josh J. Sekela, Valentina Borlandelli, Overkleeft, Hermen, Alicia A. Sorgen, Matthew R. Redinbo +10 more

A peritoneal effluent sequencing assay that removes environmental DNA contamination in peritoneal dialysis patients

Clinical Kidney Journal(2025)10.1093/ckj/sfaf358

N/A

0DataRank · unranked

1 citations

Vesh Srivatana, Omary Mzava, E. H. Belcher, Lars F. Westblade, Darshana M. Dadhania +4 more

ZINQ-L: a zero-inflated quantile approach for differential abundance analysis of longitudinal microbiome data

Frontiers in Genetics(2025)10.3389/fgene.2024.1494401

N/A

0DataRank · unranked

1 citations

Runzhe Li, John R. Lee, Ni Zhao, Wodan Ling, Shuai Li

A Staphylococcus Dominant Nasal Microbiota in Hemodialysis Patients

Kidney Medicine(2025)10.1016/j.xkme.2025.101079

N/A

0DataRank · unranked

0 citations

Nicholas Tedrow, Abhinav Bhalla, Alex Devito, Sheavonnie Wright, Friederike Selbach +6 more

Serial Blood Microbiome Profiles in Kidney Transplant Recipients: Evidence of Circulating Gut Bacteria

medRxiv(2025)10.1101/2025.09.22.25330581

N/A

0DataRank · unranked

0 citations

Ananda L. Kimm-Drapeau, William J Higgins, Mia Montecillo, Carol Li, Isha Bal +4 more

Separating the signal from the noise in metagenomic cell-free DNA sequencing

Microbiome(2020)10.1186/s40168-020-0793-4

N/A

0DataRank · unranked

53 citations

Nardhy Gomez‐Lopez, Michael Heyang, Alexandre Pellan Cheng, Joan Sesing Lenz, Darshana M. Dadhania +5 more

Separating the signal from the noise in metagenomic cell-free DNA sequencing

Research Square(2020)10.21203/rs.2.17385/v2

N/A

0DataRank · unranked

2 citations

Nardhy Gomez‐Lopez, Michael Heyang, Alexandre Pellan Cheng, Joan Sesing Lenz, Darshana M. Dadhania +5 more

FOXP3 mRNA profile prognostic of T cell mediated rejection and human kidney allograft survival

medRxiv(2020)10.1101/2020.04.28.20083493

N/A

0DataRank · unranked

0 citations

Darshana M. Dadhania, Ruchuang Ding, Thangamani Muthukumar, Michelle Lubetzky, John R. Lee +6 more