Chunhua Weng

Columbia University Irving Medical Center

Also affiliated with Columbia University

Biochemistry, Genetics and Molecular BiologyComputer ScienceHealth Professions

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.9Author DataRank

Indexed papers

15in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 15 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa032

Top 7%

3.3DataRank

Top 7%87 citations

James M. Havrilla, Fang Li, Ying Chen, Jacqueline Peng, Cong Liu +8 more

Papers

Driven by 98 papers — median percentile 39. Top paper: “Selection, optimization and validation of ten chronic disease polygenic risk scores for clinical implementation in diverse US populations”.

Selection, optimization and validation of ten chronic disease polygenic risk scores for clinical implementation in diverse US populations

Nature Medicine(2024)10.1038/s41591-024-02796-z

N/A

4.8DataRank · unranked

196 citations

Leah C. Kottyan, Christopher Kachulis, Noura S. Abul‐Husn, Joshua Arias, Gillian M. Belbin +73 more

Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa032

Top 7%

3.3DataRank

Top 7%87 citations

James M. Havrilla, Fang Li, Ying Chen, Jacqueline Peng, Cong Liu +8 more

Large language models in biomedicine and health: current research landscape and future directions

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae202

N/A

2.0DataRank · unranked

79 citations

Yifan Peng, Trevor Cohen, Marzyeh Ghassemi, Chunhua Weng, Shubo Tian +1 more

Columbia Open Health Data, clinical concept prevalence and co-occurrence from electronic health records

Scientific Data(2018)10.1038/sdata.2018.273

Top 12%

1.8DataRank

Top 12%53 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Arrhythmia Variant Associations and Reclassifications in the eMERGE-III Sequencing Study

Circulation(2021)10.1161/circulationaha.121.055562

N/A

1.2DataRank · unranked

49 citations

Giovanni Davogustto, Christian M. Shaffer, Carlos G. Vanoye, Reshma R. Desai, Eric Farber‐Eger +46 more

Identifying Data Quality Dimensions for Person-Generated Wearable Device Data: Multi-Method Study

JMIR mhealth and uhealth(2021)10.2196/31618

N/A

0.949DataRank · unranked

26 citations

Chunhua Weng, Michael G. Kahn, Karthik Natarajan, Sylvia Cho

EvidenceMap: a three-level knowledge representation for medical evidence computation and comprehension

Journal of the American Medical Informatics Association(2023)10.1093/jamia/ocad036

Top 23%

0.890DataRank

Top 23%15 citations

Yingcheng Sun, Jae Hyun Kim, Casey Ta, Adler Perotte, Kayla Schiffer +6 more

Genome-wide polygenic score to predict chronic kidney disease across ancestries

Nature Medicine(2022)10.1038/s41591-022-01869-1

N/A

0.764DataRank · unranked

162 citations

Michael C. Turchin, Amit Patki, Vinodh Srinivasasainagendra, Ning Shang, Rajiv Nadukuru +34 more

Factors Affecting the Quality of Person-Generated Wearable Device Data and Associated Challenges: Rapid Systematic Review

JMIR mhealth and uhealth(2021)10.2196/20738

N/A

0.710DataRank · unranked

113 citations

Ipek Ensari, Chunhua Weng, Michael G. Kahn, Karthik Natarajan, Sylvia Cho

Closing the gap between open source and commercial large language models for medical evidence summarization

npj Digital Medicine(2024)10.1038/s41746-024-01239-w

N/A

0.648DataRank · unranked

74 citations

Qiao Jin, Yiliang Zhou, Song Wang, Betina Idnay, Hanley Ong +9 more

A framework for employing longitudinally collected multicenter electronic health records to stratify heterogeneous patient populations on disease history

Journal of the American Medical Informatics Association(2022)10.1093/jamia/ocac008

Top 31%

0.643DataRank

Top 31%13 citations

Ilya Korsunsky, Soumya Raychaudhuri, Shawn N. Murphy, Jordan W. Smoller, Scott T. Weiss +9 more

Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project

Nature Reviews Nephrology(2020)10.1038/s41581-020-00335-w

N/A

0.641DataRank · unranked

71 citations

Lucy Lu Wang, Jennifer A. Schaub, John F. O’Toole, Becky Steck, Avi Z. Rosenberg +24 more

Strong protective effect of the APOL1 p.N264K variant against G2-associated focal segmental glomerulosclerosis and kidney disease

Nature Communications(2023)10.1038/s41467-023-43020-9

N/A

0.637DataRank · unranked

69 citations

David J. Friedman, Michelle T. McNulty, Atlas Khan, Brandon M. Lane, Chen Wang +75 more

Enhancing phenotype recognition in clinical notes using large language models: PhenoBCBERT and PhenoGPT

Patterns(2023)10.1016/j.patter.2023.100887

N/A

0.635DataRank · unranked

68 citations

Cong Liu, Wendy Deng, Wu Da, Chunhua Weng, Yunyun Zhou +2 more

Polygenic risk alters the penetrance of monogenic kidney disease

Nature Communications(2023)10.1038/s41467-023-43878-9

N/A

0.631DataRank · unranked

66 citations

Ning Shang, Jordan G. Nestor, Chunhua Weng, George Hripcsak, Peter C. Harris +3 more

Leveraging long context in retrieval augmented language models for medical question answering

npj Digital Medicine(2025)10.1038/s41746-025-01651-w

N/A

0.614DataRank · unranked

59 citations

Zihan Xu, Qiao Jin, Fangyi Chen, Yilu Fang, Yi Liu +6 more

A Retrospective Analysis of COVID-19 mRNA Vaccine Breakthrough Infections – Risk Factors and Vaccine Effectiveness

medRxiv(2021)10.1101/2021.10.05.21264583

N/A

0.590DataRank · unranked

50 citations

Junghwan Lee, Casey Ta, Ali Soroush, James R. Rogers, Jae Hyun Kim +4 more

Evaluation of the portability of computable phenotypes with natural language processing in the eMERGE network

Scientific Reports(2023)10.1038/s41598-023-27481-y

N/A

0.489DataRank · unranked

25 citations

Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David Cronkite, Sunghwan Sohn +34 more

Evidence of epistasis in regions of long-range linkage disequilibrium across five complex diseases in the UK Biobank and eMERGE datasets

The American Journal of Human Genetics(2023)10.1016/j.ajhg.2023.03.007

N/A

0.470DataRank · unranked

22 citations

Yogasudha Veturi, Scott Dudek, Anastasia Lucas, Alex Frase, Kristel Van Steen +14 more

Hypertension prevalence in the All of Us Research Program among groups traditionally underrepresented in medical research

Scientific Reports(2021)10.1038/s41598-021-92143-w

N/A

0.457DataRank · unranked

20 citations

Cheryl R. Clark, Guohai Zhou, Nyia L. Noel, Confidence Achilike, Lizette Mendez +95 more

A conceptual framework for external validity

Journal of Biomedical Informatics(2021)10.1016/j.jbi.2021.103870

N/A

0.457DataRank · unranked

20 citations

Patrick B. Ryan, Chunhua Weng, Adler Perotte, Amelia J. Averitt

PhenCards: a data resource linking human phenotype information to biomedical knowledge

Genome Medicine(2021)10.1186/s13073-021-00909-8

Top 42%

0.452DataRank

Top 42%8 citations

Cong Liu, Xiangchen Dong, Chunhua Weng, Kai Wang, James M. Havrilla

Quantitative disease risk scores from EHR with applications to clinical risk stratification and genetic studies

npj Digital Medicine(2021)10.1038/s41746-021-00488-3

N/A

0.434DataRank · unranked

17 citations

Chen Wang, Atlas Khan, Ning Shang, Zihuai He, Allan Gordon +9 more

Charting the life course: Emerging opportunities to advance scientific approaches using life course research

Journal of Clinical and Translational Science(2020)10.1017/cts.2020.492

N/A

0.416DataRank · unranked

15 citations

Claire L. Leiser, Gretchen Bandoli, Brad H. Pollock, MARGARET R. KARAGAS, Daniel Armstrong +14 more

Clinical and temporal characterization of COVID-19 subgroups using patient vector embeddings of electronic health records

Journal of the American Medical Informatics Association(2022)10.1093/jamia/ocac208

Top 45%

0.408DataRank

Top 45%8 citations

Jason Zucker, Po-Hsiang Chiu, Yilu Fang, Karthik Natarajan, Chunhua Weng +1 more

OARD: Open annotations for rare diseases and their phenotypes based on real-world data

The American Journal of Human Genetics(2022)10.1016/j.ajhg.2022.08.002

N/A

0.406DataRank · unranked

14 citations

Casey Ta, Jim M. Havrilla, Jordan G. Nestor, Matthew E. Spotnitz, Andrew S. Geneslaw +5 more

EHR-based cohort assessment for multicenter RCTs: a fast and flexible model for identifying potential study sites

Journal of the American Medical Informatics Association(2021)10.1093/jamia/ocab265

N/A

0.406DataRank · unranked

14 citations

Bethany Drury, Daniel Hood, Jeremy Harper, Tiffany Bernard, Chunhua Weng +6 more

Lipopolysaccharide-induced podocyte injury is regulated by calcineurin/NFAT and TLR4/MyD88/NF-κB signaling pathways through angiopoietin-like protein 4

Genes & Diseases(2022)10.1016/j.gendis.2020.07.005

N/A

0.385DataRank · unranked

12 citations

Chunhua Weng, Yucheng Wang, Cuili Wang, Shi Feng, Xiayu Li +5 more

An electronic health record (EHR) log analysis shows limited clinician engagement with unsolicited genetic test results

JAMIA Open(2021)10.1093/jamiaopen/ooab014

N/A

0.385DataRank · unranked

12 citations

Alexander Fedotov, David Fasel, Maddalena Marasà, Hila Milo Rasouly, Julia Wynn +7 more

Phenotype driven molecular genetic test recommendation for diagnosing pediatric rare disorders

npj Digital Medicine(2024)10.1038/s41746-024-01331-1

N/A

0.373DataRank · unranked

11 citations

Priyanka Ahimaz, Quan M. Nguyen, Rachel Lewis, Wendy K. Chung, Casey Ta +7 more

A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources

Journal of the American Medical Informatics Association(2022)10.1093/jamia/ocac057

N/A

0.345DataRank · unranked

9 citations

Laura Findley, Madison P. Goldrich, Tejinder Rakhra-Burris, Ana Stevens, Pamela A. Williams +34 more

Environment scan of generative AI infrastructure for clinical and translational science

npj Health Systems(2025)10.1038/s44401-024-00009-w

N/A

0.345DataRank · unranked

9 citations

Zihan Xu, William G. Adams, Mohammad Adibuzzaman, Nicholas R. Anderson, Neil Bahroos +52 more

Selection, optimization, and validation of ten chronic disease polygenic risk scores for clinical implementation in diverse populations

medRxiv(2023)10.1101/2023.05.25.23290535

N/A

0.330DataRank · unranked

8 citations

Leah C. Kottyan, Christopher Kachulis, Noura S. Abul‐Husn, Josh Arias, Gillian M. Belbin +71 more

Polygenic risk affects the penetrance of monogenic kidney disease

medRxiv(2023)10.1101/2023.05.07.23289614

N/A

0.330DataRank · unranked

8 citations

Ning Shang, Jordan G. Nestor, Chunhua Weng, George Hripcsak, Peter C. Harris +3 more

Neptune: an environment for the delivery of genomic medicine

Genetics in Medicine(2021)10.1038/s41436-021-01230-w

N/A

0.330DataRank · unranked

8 citations

Victoria Yi, David R. Murdock, Sara E. Kalla, Tsung-Jung Wu, Aniko Sabo +93 more

Risk factors affecting polygenic score performance across diverse cohorts

eLife(2023)10.7554/elife.88149

N/A

0.312DataRank · unranked

7 citations

Scott Dudek, Krzysztof Kiryluk, Theresa L. Walunas, Iftikhar J. Kullo, Wei‐Qi Wei +16 more

Expanding the genetic landscape of endometriosis: Integrative -omics analyses implicate key genes and pathways in a multi-ancestry study of over one million women

medRxiv(2024)10.1101/2024.11.26.24316723

N/A

0.312DataRank · unranked

7 citations

Jagyashila Das, Lannawill Caruth, Ananya Rajagopalan, Alexis T. Akerele, Ben Brumpton +33 more

Liability threshold model-based disease risk prediction based on electronic health record phenotypes

Nature Genetics(2025)10.1038/s41588-025-02370-4

N/A

0.292DataRank · unranked

6 citations

Atlas Khan, Chen Wang, Chunhua Weng, Joseph D. Buxbaum, Krzysztof Kiryluk +2 more

Psychiatric manifestations of rare variation in medically actionable genes: a PheWAS approach

BMC Genomics(2022)10.1186/s12864-022-08600-x

N/A

0.292DataRank · unranked

6 citations

Ian B. Stanaway, John J. Connolly, Joshua C. Denny, Yuan Luo, Chunhua Weng +5 more

Achieving a rapid and continuous learning health system requires socio-technical harmonization of research and operational IT

npj Health Systems(2025)10.1038/s44401-025-00031-6

N/A

0.269DataRank · unranked

5 citations

Casey Ta, Elisabeth S. DiMaria, Rachel C. Shelton, Karthik Natarajan, Soumitra SenGupta +3 more

Mini-mental status examination phenotyping for Alzheimer’s disease patients using both structured and narrative electronic health record features

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae274

Top 60%

0.253DataRank

Top 60%4 citations

Gongbo Zhang, Fangyi Chen, Casey Ta, Matthew W. Schelke, Karen Marder +2 more

The polygenic architecture of hidradenitis suppurativa reveals signaling mechanisms that implicate epithelial remodeling

medRxiv(2025)10.1101/2025.07.25.25332168

N/A

0.241DataRank · unranked

4 citations

Poppy A. Gould, Yiming Luo, Errol P. Prens, Lee Wheless, Adriana M. Hung +47 more

An interactive fitness-for-use data completeness tool to assess activity tracker data

Journal of the American Medical Informatics Association(2022)10.1093/jamia/ocac166

N/A

0.241DataRank · unranked

4 citations

Ipek Ensari, Noémie Elhadad, Chunhua Weng, Jennifer M. Radin, Brinnae Bent +3 more

Participant-guided development of bilingual genomic educational infographics for Electronic Medical Records and Genomics Phase IV study

Journal of the American Medical Informatics Association(2023)10.1093/jamia/ocad207

N/A

0.241DataRank · unranked

4 citations

Michelle E. Florido, Jamie Galarza-Cornejo, Suzanne Bakken, John Lynch, Wendy K. Chung +12 more

Misalignment between COVID-19 hotspots and clinical trial sites

Journal of the American Medical Informatics Association(2021)10.1093/jamia/ocab167

N/A

0.241DataRank · unranked

4 citations

Hao Liu, Mitchell S.V. Elkind, Muredach P. Reilly, Chunhua Weng, Shing M. Lee +1 more

Environment Scan of Generative AI Infrastructure for Clinical and Translational Science

arXiv (Cornell University)(2024)10.48550/arxiv.2410.12793

Top 62%

0.222DataRank

Top 62%2 citations

Zihan Xu, William G. Adams, Mohammad Adibuzzaman, Nicholas R. Anderson, Neil Bahroos +52 more

Genome-wide polygenic score with APOL1 risk genotypes predicts chronic kidney disease across major continental ancestries

medRxiv(2021)10.1101/2021.10.25.21265398

N/A

0.218DataRank · unranked

2 citations

Michael C. Turchin, Amit Patki, Vinodh Srinivasasainagendra, Ning Shang, Rajiv Nadukuru +33 more

Strong protective effect of the APOL1 p.N264K variant against G2-associated focal segmental glomerulosclerosis and kidney disease

medRxiv(2023)10.1101/2023.08.02.23293554

N/A

0.208DataRank · unranked

3 citations

David J. Friedman, Michelle T. McNulty, Atlas Khan, Brandon M. Lane, Chen Wang +75 more

Converting OMOP CDM to phenopackets: A model alignment and patient data representation evaluation

Journal of Biomedical Informatics(2024)10.1016/j.jbi.2024.104659

N/A

0.208DataRank · unranked

3 citations

Cong Liu, Tiffany J. Callahan, Casey Ta, Jordan G. Nestor, Chunhua Weng +1 more

Phenotype-Driven Molecular Genetic Test Recommendation for Diagnosing Pediatric Rare Disorders

Research Square(2023)10.21203/rs.3.rs-3593490/v1

N/A

0.208DataRank · unranked

3 citations

Fangyi Chen, Priyanka Ahimaz, Kai Wang, Wendy K. Chung, Casey Ta +2 more

Incorporating preprints in systematic reviews: a preliminary study of a novel method for rapid evidence synthesis

Journal of the American Medical Informatics Association(2025)10.1093/jamia/ocaf111

N/A

0.165DataRank · unranked

2 citations

Yifei Sun, Rebecca A. Hubbard, M. Elle Saine, Hua Xu, Xu Zuo +8 more

Insights from the largest diverse ancestry sex-specific disease map for genetically predicted height

npj Genomic Medicine(2025)10.1038/s41525-025-00464-w

N/A

0.104DataRank · unranked

1 citations

Elizabeth Litkowski, Mariaelisa Graff, Zhe Wang, Roelof A. J. Smit, Geetha Chittoor +34 more

Inborn Errors of Immunity Contribute to the Burden of Skin Disease and Create Opportunities for Improving the Practice of Dermatology

Journal of Investigative Dermatology(2023)10.1016/j.jid.2023.08.018

N/A

0DataRank · unranked

3 citations

Soundos Youssef, Heeju Noh, J G Wright, Ghislaine Jumonville, Kathleen LaRow Brown +6 more

Evaluating Large Language Models on Medical Evidence Summarization

medRxiv(2023)10.1101/2023.04.22.23288967

N/A

0DataRank · unranked

40 citations

Zhaoyi Sun, Betina Idnay, Jordan G. Nestor, Ali Soroush, Pierre Elias +7 more

Fine-tuning Large Language Models for Rare Disease Concept Normalization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.28.573586

N/A

0DataRank · unranked

14 citations

Cong Liu, Jingye Yang, Chunhua Weng, Andy Wang

Deep Learning for Rare Disease: A Scoping Review

medRxiv(2022)10.1101/2022.06.29.22277046

N/A

0DataRank · unranked

5 citations

Cong Liu, Junyoung Kim, Zhehuan Chen, Yingcheng Sun, James R. Rogers +3 more

Uncovering key clinical trial features influencing recruitment

Journal of Clinical and Translational Science(2023)10.1017/cts.2023.623

N/A

0DataRank · unranked

15 citations

Yilu Fang, Alex Butler, Joyce Moran, Ziran Li, Junghwan Lee +12 more

Rapid exome sequencing in PICU patients with new-onset metabolic or neurological disorders

Pediatric Research(2020)10.1038/s41390-020-0858-x

N/A

0DataRank · unranked

28 citations

John P. Schacht, Christine Umandap, David Fasel, Chunhua Weng, Joshua Cappell +3 more

Leveraging Generative AI for Clinical Evidence Summarization Needs to Ensure Trustworthiness

arXiv (Cornell University)(2023)10.48550/arxiv.2311.11211

N/A

0DataRank · unranked

2 citations

Qiao Jin, Denis Jered McInerney, Chen, Yong, Fei Wang, Curtis L. Cole +9 more

Polygenic risk alters the penetrance of monogenic kidney disease

Research Square(2023)10.21203/rs.3.rs-2922940/v1

N/A

0DataRank · unranked

0 citations

Atlas Khan, Ning Shang, Jordan G. Nestor, Chunhua Weng, George Hripcsak +3 more

5-year data set: single concept count

Figshare(2018)10.6084/m9.figshare.6731318

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Lifetime dataset: single concept deviations

Figshare(2018)10.6084/m9.figshare.7148078

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

5-year dataset: single concept deviations

Figshare(2018)10.6084/m9.figshare.7148081

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Rare disease diagnosis using knowledge guided retrieval augmentation for ChatGPT

Journal of Biomedical Informatics(2024)10.1016/j.jbi.2024.104702

N/A

0DataRank · unranked

38 citations

Wendy K. Chung, Médéric Jeanne, Gongbo Zhang, Chunhua Weng, Charlotte Zelin

Leveraging generative AI for clinical evidence synthesis needs to ensure trustworthiness

Journal of Biomedical Informatics(2024)10.1016/j.jbi.2024.104640

N/A

0DataRank · unranked

37 citations

Qiao Jin, Denis Jered McInerney, Yong Chen, Fei Wang, Curtis L. Cole +9 more

Fine-tuning large language models for rare disease concept normalization

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae133

N/A

0DataRank · unranked

35 citations

Cong Liu, Jingye Yang, Chunhua Weng, Andy Wang

Return of polygenic risk scores in research: Stakeholders’ views on the eMERGE-IV study

Human Genetics and Genomics Advances(2024)10.1016/j.xhgg.2024.100281

N/A

0DataRank · unranked

16 citations

Suzanne Bakken, Wendy K. Chung, Elizabeth Cohn, Katherine D. Crew, Krzysztof Kiryluk +4 more

Deep learning for rare disease: A scoping review

Journal of Biomedical Informatics(2022)10.1016/j.jbi.2022.104227

N/A

0DataRank · unranked

62 citations

Cong Liu, Junyoung Kim, Zhehuan Chen, Yingcheng Sun, James R. Rogers +3 more

Retrieval augmented scientific claim verification

JAMIA Open(2024)10.1093/jamiaopen/ooae021

N/A

0DataRank · unranked

8 citations

Ali Soroush, Jordan G. Nestor, Elizabeth Park, Betina Idnay, Yilu Fang +6 more

Knowledge-guided generative artificial intelligence for automated taxonomy learning from drug labels

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae105

N/A

0DataRank · unranked

8 citations

Patrick Ryan, Chunhua Weng, Yilu Fang

Promoting equity in clinical research: The role of social determinants of health

Journal of Biomedical Informatics(2024)10.1016/j.jbi.2024.104663

N/A

0DataRank · unranked

8 citations

Yilu Fang, Edward Stanley, Brenda Ruotolo, Wendy K. Chung, Karen Marder +2 more

Bridging the Gap in Genomic Implementation: Identifying User Needs for Precision Nephrology

Kidney International Reports(2024)10.1016/j.ekir.2024.05.032

N/A

0DataRank · unranked

5 citations

Teena Zachariah, Wooin Ahn, Atlas Khan, Krzysztof Kiryluk, Sumit Mohan +4 more

Loci identified by a genome‐wide association study of carotid artery stenosis in the eMERGE network

Genetic Epidemiology(2020)10.1002/gepi.22360

N/A

0DataRank · unranked

10 citations

Daniel Seung Kim, David R. Crosslin, Ian B. Stanaway, Elisabeth A. Rosenthal, David Carrell +19 more

Enhancing Genetic Association Power in Endometriosis through Unsupervised Clustering of Clinical Subtypes Identified from Electronic Health Records

medRxiv(2024)10.1101/2024.04.22.24306092

N/A

0DataRank · unranked

2 citations

Leigh Ann Humphrey, Margaret Rush, Meredith Pollie, Yuan Luo, Chunhua Weng +12 more

Closing the gap between open-source and commercial large language models for medical evidence summarization

arXiv (Cornell University)(2024)10.48550/arxiv.2408.00588

N/A

0DataRank · unranked

2 citations

Qiao Jin, Yiliang Zhou, Song Wang, Betina Idnay, Hanley Ong +9 more

A systematic review on natural language processing systems for eligibility prescreening in clinical research

Journal of the American Medical Informatics Association(2021)10.1093/jamia/ocab228

N/A

0DataRank · unranked

49 citations

Caitlin Dreisbach, Chunhua Weng, Rebecca Schnall, Betina Idnay

Entry-level guide to the use of large language models for medical research

PubMed(2024)10.48550/arxiv.2410.18856

N/A

0DataRank · unranked

2 citations

Nicholas Wan, Robert Leaman, Shubo Tian, Zhizheng Wang, Yifan Yang +18 more

Enhancing genetic association power in endometriosis through unsupervised clustering of clinical subtypes identified from electronic health records

Research Square(2024)10.21203/rs.3.rs-5004325/v1

N/A

0DataRank · unranked

1 citations

Lindsay Guare, Leigh Ann Humphrey, Margaret Rush, Meredith Pollie, James Jaworski +13 more

Sociotechnical feasibility of natural language processing-driven tools in clinical trial eligibility prescreening for Alzheimer’s disease and related dementias

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae032

N/A

0DataRank · unranked

0 citations

Jianfang Liu, Yilu Fang, Alex Hernández, Shivani Kaw, Alicia Etwaru +6 more

Clinical Data: Sources and Types, Regulatory Constraints, Applications

UNC Libraries(2024)10.17615/a2ht-zp91

N/A

0DataRank · unranked

0 citations

Stanley C. Ahalt, Gustavo Glusman, Emily Pfaff, Peter N. Robinson, The Biomedical Data Translator Consortium +8 more

A MapReduce Approach to Effectively Utilize Long Context Information in Retrieval Augmented Language Models

arXiv (Cornell University)(2024)10.48550/arxiv.2412.15271

N/A

0DataRank · unranked

0 citations

Zihan Xu, Qiao Jin, Fangyi Chen, Yilu Fang, Yi Liu +6 more

Lifetime data set: single concept count

Figshare(2018)10.6084/m9.figshare.6731315

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

An individual-level socioeconomic measure for assessing algorithmic bias in health care settings: A case for HOUSES index

medRxiv(2021)10.1101/2021.08.10.21261833

N/A

0DataRank · unranked

3 citations

Euijung Ryu, Chung‐Il Wi, Katherine S. King, Santiago Romero‐Brufau, Chunhua Weng +4 more

Generalizability of Polygenic Risk Scores for Breast Cancer in the Multiethnic eMERGE Study

medRxiv(2020)10.1101/2020.08.17.20176685

N/A

0DataRank · unranked

0 citations

Nur Zeinomar, Wendy K. Chung, Krzysztof Kiryluk, Ali G. Ghravi, George Hripcsak +17 more

Data Quality of Chemotherapy-Induced Nausea and Vomiting Documentation

Applied Clinical Informatics(2021)10.1055/s-0041-1728698

N/A

0DataRank · unranked

8 citations

Chunhua Weng, Lillian Sung, Adrienne Pichon, Maura Abbott, Dawn L. Hershman +2 more

Semi-supervised learning from small annotated data and large unlabeled data for fine-grained Participants, Intervention, Comparison, and Outcomes entity recognition

Journal of the American Medical Informatics Association(2025)10.1093/jamia/ocae326

N/A

0DataRank · unranked

6 citations

Gongbo Zhang, Yilu Fang, Yifan Peng, Chunhua Weng, Fangyi Chen

Concepts

Figshare(2018)10.6084/m9.figshare.6731312

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Risk factors affecting polygenic score performance across diverse cohorts

eLife(2025)10.7554/elife.88149.3

N/A

0DataRank · unranked

0 citations

Scott Dudek, Krzysztof Kiryluk, Theresa L. Walunas, Iftikhar Kullo, Wei‐Qi Wei +16 more

Incorporating Preprints in Systematic Reviews: A Preliminary Study of a Novel Method for Rapid Evidence Synthesis

medRxiv(2025)10.1101/2025.07.15.25331581

N/A

0DataRank · unranked

0 citations

Yifei Sun, Rebecca A. Hubbard, M. Elle Saine, Hua Xu, Xu Zuo +8 more

Scalable scientific interest profiling using large language models

Journal of Biomedical Informatics(2025)10.1016/j.jbi.2025.104949

N/A

0DataRank · unranked

0 citations

Gongbo Zhang, Edward Sun, Betina Idnay, Yilu Fang, Fang-Yi Chen +4 more

A method for characterizing disease progression from acute kidney injury to chronic kidney disease

Journal of Biomedical Informatics(2025)10.1016/j.jbi.2025.104956

N/A

0DataRank · unranked

0 citations

Jordan G. Nestor, Casey Ta, Jerard Kneifati‐Hayek, Chunhua Weng, Yilu Fang

Natural language processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder

BMC Medical Informatics and Decision Making(2020)10.1186/s12911-020-01352-2

N/A

0DataRank · unranked

34 citations

Mengge Zhao, James M. Havrilla, Cong Liu, Chunhua Weng, W. Spencer Guthrie +4 more

5-year data set: paired concept counts

Figshare(2018)10.6084/m9.figshare.6731309

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Deep phenotyping: Embracing complexity and temporality—Towards scalability, portability, and interoperability

Journal of Biomedical Informatics(2020)10.1016/j.jbi.2020.103433

N/A

0DataRank · unranked

77 citations

Nigam H. Shah, George Hripcsak, Chunhua Weng

RETRACTED: Corrigendum to “Lipopolysaccharide-induced podocyte injury is regulated by calcineurin/NFAT and TLR4/MyD88/NF-κB signaling pathways through Angiopoietin-like protein 4” [Genes Dis DOI: 10.1016/j.gendis.2020.07.005]

Genes & Diseases(2022)10.1016/j.gendis.2021.09.001

N/A

0DataRank · unranked

0 citations

Chunhua Weng, Yucheng Wang, Cuili Wang, Shi Feng, Xiayu Li +5 more

GeneLiFT: A novel test to facilitate rapid screening of genetic literacy in a diverse population undergoing genetic testing

Journal of Genetic Counseling(2020)10.1002/jgc4.1364

N/A

0DataRank · unranked

33 citations

Nicole Cuneo, Maddalena Marasà, Natalia DeMaria, Debanjana Chatterjee, Jacqueline J. Thompson +8 more

A data-driven approach to optimizing clinical study eligibility criteria

Journal of Biomedical Informatics(2023)10.1016/j.jbi.2023.104375

N/A

0DataRank · unranked

7 citations

Hao Liu, Betina Idnay, Casey Ta, Karen Marder, Chunhua Weng +1 more

Evaluating large language models on medical evidence summarization

npj Digital Medicine(2023)10.1038/s41746-023-00896-7

N/A

0DataRank · unranked

372 citations

Zhaoyi Sun, Betina Idnay, Jordan G. Nestor, Ali Soroush, Pierre Elias +7 more

Chunhua Weng

Indexed papers

Top data-sharing exemplar

Papers