🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Marius van den Beek

Pennsylvania State University

ORCID: 0000-0002-9676-7032
Decision SciencesBiochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 7%percentile
0.104Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

GenomicSuperSignature: interpretation of RNA-seq experiments through robust, efficient comparison to public databases

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445900
Top 78%
0.104DataRank
Top 78%1 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

Papers

Driven by 15 papers — median percentile 22. Top paper: “No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics”.

No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics

PLoS Pathogens(2020)10.1371/journal.ppat.1008643
N/A
1.5DataRank · unranked
34 citations

Marius van den Beek, Daniel Blankenberg, Dave Bouvier, John Chilton, Nate Coraor +13 more

Ready-to-use public infrastructure for global SARS-CoV-2 monitoring

Nature Biotechnology(2021)10.1038/s41587-021-01069-1
N/A
1.4DataRank · unranked
30 citations

Simon Bray, Marius van den Beek, Dave Bouvier, Nathan Coraor, Milad Miladi +12 more

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

Nature Biotechnology(2024)10.1038/s41587-023-02100-3
N/A
1.2DataRank · unranked
69 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +36 more

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Nucleic Acids Research(2022)10.1093/nar/gkac247
N/A
1.1DataRank · unranked
1384 citations

Enis Afgan, Anton Nekrutenko, Björn Grüning, Daniel Blankenberg, Jeremy Goecks +89 more

GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases

Nature Communications(2022)10.1038/s41467-022-31411-3
N/A
0.523DataRank · unranked
14 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546576
N/A
0.373DataRank · unranked
11 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +32 more

From data to publication in a browser with BRC-Analytics: Evolutionary dynamics of coding overlaps in measles virus

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.13.682095
N/A
0.165DataRank · unranked
2 citations

Danielle Callan, Marius van den Beek, Dannon Baker, David J. Rogers, Wolfgang Maier +8 more

GenomicSuperSignature: interpretation of RNA-seq experiments through robust, efficient comparison to public databases

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445900
Top 78%
0.104DataRank
Top 78%1 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

Expanding the Galaxy’s reference data

Bioinformatics Advances(2022)10.1093/bioadv/vbac030
N/A
0DataRank · unranked
3 citations

Jayadev Joshi, Nate Coraor, Jennifer Hillman‐Jackson, Dave Bouvier, Marius van den Beek +22 more

Planemo: a command-line toolkit for developing, deploying, and executing scientific data analyses

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.13.483965
N/A
0DataRank · unranked
3 citations

Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut, Helena Rasche +6 more

Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy

BMC Bioinformatics(2023)10.1186/s12859-023-05389-8
N/A
0DataRank · unranked
2 citations

Dannon Baker, Marius van den Beek, Bjoern Gruening, Dave Bouvier, Nate Coraor +5 more

Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.17.435706
N/A
0DataRank · unranked
0 citations

Dannon Baker, Marius van den Beek, Bjoern Gruening, Dave Bouvier, Nate Coraor +5 more

Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.25.437046
N/A
0DataRank · unranked
10 citations

Simon Bray, Marius van den Beek, Dave Bouvier, Nathaniel Coraor, Milad Miladi +12 more

Expanding the Galaxy’s reference data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.09.327114
N/A
0DataRank · unranked
3 citations

Jayadev Joshi, Nate Coraor, Jennifer Hillman‐Jackson, Dave Bouvier, Marius van den Beek +22 more

The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond

Genome Research(2023)10.1101/gr.276963.122
N/A
0DataRank · unranked
16 citations

John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Bérénice Batut +6 more