Nir Friedman

Computer ScienceMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 19 papers. Top paper: “Automatic genome-wide reconstruction of phylogenetic gene trees”.

Automatic genome-wide reconstruction of phylogenetic gene trees

Bioinformatics(2007)10.1093/bioinformatics/btm193

N/A

7.0DataRank · unranked

139 citations

Avi Pfeffer, Nir Friedman, Prisca Liberali, Ilan Wapinski

Systematic Dissection of Roles for Chromatin Regulators in a Yeast Stress Response

PLoS Biology(2012)10.1371/journal.pbio.1001369

N/A

6.3DataRank · unranked

178 citations

Hsiuyi V. Chen, Chih Long Liu, Ayelet Rahat, Avital Klien, Luis Soares +9 more

A functional selection model explains evolutionary robustness despite plasticity in regulatory networks

Molecular Systems Biology(2012)10.1038/msb.2012.50

N/A

2.6DataRank · unranked

51 citations

Ilan Wapinski, Hanah Margalit, Prisca Liberali, Nir Friedman, Naomi Habib

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Nature Biotechnology(2011)10.1038/nbt.1883

N/A

1.5DataRank · unranked

22458 citations

Brian J. Haas, Moran Yassour, Joshua Z. Levin, Ido Amit, Xian Adiconis +19 more

Using Bayesian Networks to Analyze Expression Data

Journal of Computational Biology(2000)10.1089/106652700750050961

N/A

1.2DataRank · unranked

3318 citations

Michal Linial, Iftach Nachman, Paul A. Reyfman, Nir Friedman

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

Nature Genetics(2003)10.1038/ng1165

N/A

1.1DataRank · unranked

1701 citations

Michael Shapira, Prisca Liberali, David Botstein, Daphne Koller, Nir Friedman +3 more

Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis

Cell(2011)10.1016/j.cell.2011.01.004

N/A

1.0DataRank · unranked

984 citations

Aravind Subramanian, Lee N. Lawton, Raymond H. Mak, W. Nicholas Haining, Naomi Habib +23 more

Comprehensive comparative analysis of strand-specific RNA sequencing methods

Nature Methods(2010)10.1038/nmeth.1491

N/A

0.996DataRank · unranked

765 citations

Moran Yassour, Xian Adiconis, Irene Newsham, Nir Friedman, Andreas Gnirke +3 more

A module map showing conditional activity of expression modules in cancer

Nature Genetics(2004)10.1038/ng1434

N/A

0.983DataRank · unranked

700 citations

Nir Friedman, Daphne Koller, Prisca Liberali, Eran Segal

Natural history and evolutionary principles of gene duplication in fungi

Nature(2007)10.1038/nature06107

N/A

0.967DataRank · unranked

629 citations

Avi Pfeffer, Nir Friedman, Prisca Liberali, Ilan Wapinski

Inferring subnetworks from perturbed expression profiles

Bioinformatics(2001)10.1093/bioinformatics/17.suppl_1.s215

N/A

0.949DataRank · unranked

559 citations

Prisca Liberali, Gal Elidan, Nir Friedman, Paul A. Reyfman

Comparative Functional Genomics of the Fission Yeasts

Science(2011)10.1126/science.1203357

N/A

0.940DataRank · unranked

524 citations

Zehua Chen, Moran Yassour, Brian J. Haas, Naomi Habib, Ilan Wapinski +64 more

Development and evaluation of RNA-seq methods

Genome Biology(2010)10.1186/gb-2010-11-s1-p26

N/A

0.833DataRank · unranked

9 citations

Xian Adiconis, Moran Yassour, Dawn Thompson, Mitchell Guttman, Lin Fan +7 more

Structure and function of a transcriptional network activated by the MAPK Hog1

Nature Genetics(2008)10.1038/ng.235

N/A

0.819DataRank · unranked

234 citations

Tommy Kaplan, Ying Liu, Naomi Habib, Prisca Liberali, Nir Friedman +2 more

Physical Module Networks: an integrative approach for reconstructing transcription regulation

Bioinformatics(2011)10.1093/bioinformatics/btr222

N/A

0.546DataRank · unranked

37 citations

Prisca Liberali, Nir Friedman, Noa Novershtern

Author Correction: Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

Nature Biotechnology(2020)10.1038/s41587-020-0665-2

N/A

0.485DataRank · unranked

7 citations

Eeshit Dhaval Vaishnav, Ronen Sadeh, Esteban Luis Abeyta, Nir Friedman, Prisca Liberali +1 more

ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin

Nature Biotechnology(2021)10.1038/s41587-020-00775-6

N/A

0DataRank · unranked

170 citations

Israa Sharkia, Gavriel Fialkoff, Ayelet Rahat, Jenia Gutin, Alon Chappleboim +26 more

Extrachromosomal DNA Amplification Contributes to Small Cell Lung Cancer Heterogeneity and Is Associated with Worse Outcomes

Cancer Discovery(2023)10.1158/2159-8290.cd-22-0796

N/A

0DataRank · unranked

118 citations

Christopher W. Schultz, Lorenzo Rinaldi, Darawalee Wangsa, Christophe E. Redon, Nobuyuki Takahashi +32 more

Polyclonal lymphoid expansion drives paraneoplastic autoimmunity in neuroblastoma

Cell Reports(2023)10.1016/j.celrep.2023.112879

N/A

0DataRank · unranked

9 citations

Erez Greenstein, Martin L. Buchkovich, Ayelet Peres, Eric Santoni‐Rugiu, Lei Yang +16 more