Anna Niarakis

Centre National de la Recherche Scientifique

Also affiliated with Université Toulouse III - Paul Sabatier, Université Fédérale de Toulouse Midi-Pyrénées, Université Paris-Saclay, Centre de Recherches sur la Cognition Animale, Centre de Biologie du Développement, Centre Inria de Saclay, Centre de Biologie Intégrative de Toulouse

Biochemistry, Genetics and Molecular BiologyComputer ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 9 papers. Top paper: “Automated inference of Boolean models from molecular interaction maps using CaSQ”.

Automated inference of Boolean models from molecular interaction maps using CaSQ

Bioinformatics(2020)10.1093/bioinformatics/btaa484

N/A

0DataRank · unranked

81 citations

Vidisha Singh, Aurélien Naldi, Tomáš Helikar, Anna Niarakis, Sara Sadat Aghamiri

Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop

Briefings in Bioinformatics(2020)10.1093/bib/bbaa046

N/A

0DataRank · unranked

38 citations

Martin Kuiper, Marek Ostaszewski, Rahuman S. Malik‐Sheriff, Cristina Casals‐Casas, Denis Thieffry +14 more

A practical guide to mechanistic systems modeling in biology using a logic-based approach

Briefings in Bioinformatics(2020)10.1093/bib/bbaa236

N/A

0DataRank · unranked

36 citations

Tomáš Helikar, Anna Niarakis

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems

INRIA a CCSD electronic archive server(2020)10.5281/zenodo.4245269

N/A

0DataRank · unranked

0 citations

Tomáš Helikar, Matteo Barberis, Marc R. Birtwistle, Laurence Calzone, Claudine Chaouiya +7 more

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems

Bioinformatics(2021)10.1093/bioinformatics/btab229

N/A

0DataRank · unranked

13 citations

Tomáš Helikar, Matteo Barberis, Marc R. Birtwistle, Laurence Calzone, Claudine Chaouiya +7 more

Building digital twins of the human immune system: toward a roadmap

npj Digital Medicine(2022)10.1038/s41746-022-00610-z

N/A

0DataRank · unranked

160 citations

Anna Niarakis, Tomáš Helikar, Gary An, Bruce E. Shapiro, Rahuman S. Malik‐Sheriff +5 more

Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology

Briefings in Bioinformatics(2022)10.1093/bib/bbac212

N/A

0DataRank · unranked

30 citations

Dagmar Waltemath, James A. Glazier, Falk Schreiber, Sarah Keating, David P Nickerson +8 more

Computational modelling in health and disease: highlights of the 6th annual SysMod meeting

Bioinformatics(2022)10.1093/bioinformatics/btac609

N/A

0DataRank · unranked

3 citations

Juilee Thakar, Matteo Barberis, María Rodríguez Martínez, Tomáš Helikar, Marc R. Birtwistle +4 more

Immune digital twins for complex human pathologies: applications, limitations, and challenges

npj Systems Biology and Applications(2024)10.1038/s41540-024-00450-5

N/A

0DataRank · unranked

75 citations

Reinhard Laubenbacher, Gary An, Yaron Ilan, Jasmin Fisher, Åsmund Flobak +42 more