Ivan Ovcharenko

Also affiliated with United States National Library of Medicine

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.1Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

Nature(2004)10.1038/nature03156

Top 2%

8.1DataRank

Top 2%456 citations

Gane Ka‐Shu Wong, Bin Liu, Jun Wang, Yong Zhang, Xu Yang +105 more

Papers

Driven by 35 papers — median percentile 98. Top paper: “A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms”.

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

Nature(2004)10.1038/nature03156

Top 2%

8.1DataRank

Top 2%456 citations

Gane Ka‐Shu Wong, Bin Liu, Jun Wang, Yong Zhang, Xu Yang +105 more

A model of active transcription hubs that unifies the roles of active promoters and enhancers

Nucleic Acids Research(2021)10.1093/nar/gkab235

N/A

1.5DataRank · unranked

59 citations

Wei Song, Ivan Ovcharenko, David Landsman, Iris Zhu

The first enhancer in an enhancer chain safeguards subsequent enhancer-promoter contacts from a distance

Genome Biology(2019)10.1186/s13059-019-1808-y

N/A

0.914DataRank · unranked

29 citations

Roded Sharan, Ivan Ovcharenko, Wei Song

De novo human brain enhancers created by single nucleotide mutations

Research Square(2021)10.21203/rs.3.rs-765891/v1

N/A

0DataRank · unranked

6 citations

Sridhar Hannenhalli, Ivan Ovcharenko, Shan Li

De novo human brain enhancers created by single nucleotide mutations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.04.451055

N/A

0DataRank · unranked

0 citations

Sridhar Hannenhalli, Ivan Ovcharenko, Shan Li

A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish

Cell Genomics(2022)10.1016/j.xgen.2022.100170

N/A

0DataRank · unranked

45 citations

Claire C. Slevin, Wei Song, Zelin Chen, Stephen C. Frederickson, Derek Gildea +5 more

Heterogeneity of enhancers embodies shared and representative functional groups underlying developmental and cell type-specific gene regulation

Gene(2022)10.1016/j.gene.2022.146640

N/A

0DataRank · unranked

1 citations

Ivan Ovcharenko, Wei Song

Enhancer–silencer transitions in the human genome

Genome Research(2022)10.1101/gr.275992.121

N/A

0DataRank · unranked

65 citations

Ivan Ovcharenko, Di Huang

A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.09.479753

N/A

0DataRank · unranked

3 citations

Claire C. Slevin, Wei Song, Zelin Chen, Stephen C. Frederickson, Derek Gildea +5 more

Modeling islet enhancers using deep learning identifies candidate causal variants at loci associated with T2D and glycemic traits

medRxiv(2022)10.1101/2022.05.13.22275035

N/A

0DataRank · unranked

2 citations

D. Leland Taylor, Wei Song, Narisu Narisu, Redwan M. Bhuiyan, Henry J. Taylor +8 more

De novo human brain enhancers created by single-nucleotide mutations

Science Advances(2023)10.1126/sciadv.add2911

N/A

0DataRank · unranked

36 citations

Sridhar Hannenhalli, Ivan Ovcharenko, Shan Li

Modeling islet enhancers using deep learning identifies candidate causal variants at loci associated with T2D and glycemic traits

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2206612120

N/A

0DataRank · unranked

17 citations

D. Leland Taylor, Wei Song, Narisu Narisu, Redwan M. Bhuiyan, Henry J. Taylor +10 more

Detection of new pioneer transcription factors as cell-type-specific nucleosome binders

eLife(2023)10.7554/elife.88936

N/A

0DataRank · unranked

16 citations

Wei Song, Vladimir B. Teif, Ivan Ovcharenko, David Landsman, Anna R. Panchenko +1 more

ChromDL: a next-generation regulatory DNA classifier

Bioinformatics(2023)10.1093/bioinformatics/btad217

N/A

0DataRank · unranked

2 citations

Sanjarbek Hudaiberdiev, Ivan Ovcharenko, Chris Hill

ChromDL: A Next-Generation Regulatory DNA Classifier

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.27.525971

N/A

0DataRank · unranked

1 citations

Sanjarbek Hudaiberdiev, Ivan Ovcharenko, Chris Hill

Functional characteristics and computational model of abundant hyperactive loci in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.05.527203

N/A

0DataRank · unranked

1 citations

Ivan Ovcharenko, Sanjarbek Hudaiberdiev

Detection of new pioneer transcription factors as cell-type specific nucleosome binders

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.10.540098

N/A

0DataRank · unranked

1 citations

Wei Song, Vladimir B. Teif, Ivan Ovcharenko, David Landsman, Anna R. Panchenko +1 more

Detection of new pioneer transcription factors as cell-type specific nucleosome binders

(2023)10.7554/elife.88936.2

N/A

0DataRank · unranked

1 citations

Wei Song, Vladimir B. Teif, Ivan Ovcharenko, David Landsman, Anna R. Panchenko +1 more

Reviewer #3 (Public Review): Detection of new pioneer transcription factors as cell-type specific nucleosome binders

(2023)10.7554/elife.88936.2.sa0

N/A

0DataRank · unranked

0 citations

Wei Song, Vladimir B. Teif, Ivan Ovcharenko, David Landsman, Anna R. Panchenko +1 more

Detection of new pioneer transcription factors as cell-type specific nucleosome binders

(2023)10.7554/elife.88936.3

N/A

0DataRank · unranked

0 citations

Wei Song, Vladimir B. Teif, Ivan Ovcharenko, David Landsman, Anna R. Panchenko +1 more

Author Response: Detection of new pioneer transcription factors as cell-type specific nucleosome binders

(2023)10.7554/elife.88936.3.sa4

N/A

0DataRank · unranked

0 citations

Wei Song, Vladimir B. Teif, Ivan Ovcharenko, David Landsman, Anna R. Panchenko +1 more

Reviewer #3 (Public Review): Detection of new pioneer transcription factors as cell-type specific nucleosome binders

(2023)10.7554/elife.88936.3.sa0

N/A

0DataRank · unranked

0 citations

Wei Song, Vladimir B. Teif, Ivan Ovcharenko, David Landsman, Anna R. Panchenko +1 more

Detection of new pioneer transcription factors as cell-type-specific nucleosome binders

eLife(2024)10.7554/elife.88936.4

N/A

0DataRank · unranked

17 citations

Wei Song, Vladimir B. Teif, Ivan Ovcharenko, David Landsman, Anna R. Panchenko +1 more

The contribution of silencer variants to human diseases

Genome biology(2024)10.1186/s13059-024-03328-1

N/A

0DataRank · unranked

7 citations

Ivan Ovcharenko, Di Huang

Abundant repressor binding sites in human enhancers are associated with the fine-tuning of gene regulation

iScience(2024)10.1016/j.isci.2024.111658

N/A

0DataRank · unranked

2 citations

Ivan Ovcharenko, Wei Song

Functional characteristics and computational model of abundant hyperactive loci in the human genome

eLife(2024)10.7554/elife.95170

N/A

0DataRank · unranked

2 citations

Ivan Ovcharenko, Sanjarbek Hudaiberdiev

Reviewer #2 (Public Review): Sequence characteristics and an accurate model of abundant hyperactive loci in the human genome

(2024)10.7554/elife.95170.1.sa1

N/A

0DataRank · unranked

0 citations

Ivan Ovcharenko, Sanjarbek Hudaiberdiev

Author response: Functional characteristics and computational model of abundant hyperactive loci in the human genome

(2024)10.7554/elife.95170.2.sa0

N/A

0DataRank · unranked

0 citations

Ivan Ovcharenko, Sanjarbek Hudaiberdiev

Functional characteristics and computational model of abundant hyperactive loci in the human genome

eLife(2024)10.7554/elife.95170.3

N/A

0DataRank · unranked

0 citations

Ivan Ovcharenko, Sanjarbek Hudaiberdiev

Super-silencers are crucial for development and carcinogenesis in B cells

Nature Communications(2025)10.1038/s41467-025-63329-x

N/A

0DataRank · unranked

3 citations

Hanna M. Petrykowska, Dhaneshwar Kumar, Lela Kardava, Susan Moir, Behdad Afzali +3 more

Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants

Genes(2025)10.3390/genes16101223

N/A

0DataRank · unranked

3 citations

Kathryn Borkowski, Ivan Ovcharenko, Gaetano Manzo

Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.19.654920

N/A

0DataRank · unranked

2 citations

Kathryn Borkowski, Ivan Ovcharenko, Gaetano Manzo

Silencer variants are key drivers of gene upregulation in Alzheimer’s disease

medRxiv(2025)10.1101/2025.04.07.25325386

N/A

0DataRank · unranked

1 citations

Ivan Ovcharenko, Di Huang

Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants

Cell(2020)10.1016/j.cell.2020.02.031

N/A

0DataRank · unranked

194 citations

Yiwen Zhu, Guy Kelman, Catherine S. Novak, Ingrid Plajzer-Frick, Momoe Kato +22 more

Bimodal sequence composition underlies functional duality of transcribed enhancers

Research Square (Research Square)(2020)10.21203/rs.3.rs-55967/v1

N/A

0DataRank · unranked

0 citations

Ivan Ovcharenko, Mario Flores

Ivan Ovcharenko

Indexed papers

Top data-sharing exemplar

Papers