Joseph T. Wade

Also affiliated with New York State Department of Health, Wadsworth Center, University at Albany, State University of New York, University of Arts

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

4.5Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12

Microbial Genomics(2022)10.1099/mgen.0.000833

Top 8%

2.9DataRank

Top 8%117 citations

Claire Rioualen, Heladia Salgado, Paloma Lara, Socorro Gama‐Castro, Patrick Lally +17 more

Papers

Driven by 34 papers — median percentile 66. Top paper: “RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12”.

RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12

Microbial Genomics(2022)10.1099/mgen.0.000833

Top 8%

2.9DataRank

Top 8%117 citations

Claire Rioualen, Heladia Salgado, Paloma Lara, Socorro Gama‐Castro, Patrick Lally +17 more

A Mycobacterial Systems Resource for the Research Community

mBio(2021)10.1128/mbio.02401-20

Top 19%

1.1DataRank

Top 19%48 citations

Jill G. Canestrari, Ryan R. Clark, Anish Zacharia Joseph, Pascal Lapierre, Erica Lasek‐Nesselquist +21 more

Predictive biophysical neural network modeling of a compendium of in vivo transcription factor DNA binding profiles for Escherichia coli

Nature Communications(2025)10.1038/s41467-025-58862-8

Top 50%

0.351DataRank

Top 50%8 citations

Laura Gómez-Romero, Víctor H. Tierrafría, Patricia Aquino, Claire Rioualen, Xiaoman Zhang +9 more

Predictive Biophysical Neural Network Modeling of a Compendium of in vivo Transcription Factor DNA Binding Profiles for Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.23.594371

Top 62%

0.223DataRank

Top 62%3 citations

Laura Gómez-Romero, Víctor H. Tierrafría, Patricia Aquino, Claire Rioualen, Xiaoman Zhang +9 more

Regulatory crosstalk between motility and interbacterial communication in Salmonella Typhimurium

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.09.289983

N/A

0DataRank · unranked

2 citations

Fabienne F. V. Chevance, Anne M. Stringer, Kelly T. Hughes, Joseph T. Wade, Jonathan Plitnick

Regulatory roles of 5′ UTR and ORF-internal RNAs detected by 3′ end mapping

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.18.207399

N/A

0DataRank · unranked

1 citations

Gabriele Baniulyte, Caroline Esnault, Kavya Chegireddy, Navjot Singh, Molly Monge +4 more

Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping

eLife(2021)10.7554/elife.62438

N/A

0DataRank · unranked

139 citations

Gabriele Baniulyte, Caroline Esnault, Kavya Chegireddy, Navjot Singh, Molly Monge +4 more

Identification of Novel Translated Small Open Reading Frames in Escherichia coli Using Complementary Ribosome Profiling Approaches

Journal of Bacteriology(2021)10.1128/jb.00352-21

N/A

0DataRank · unranked

39 citations

Carol Smith, Kyle Mangano, Joseph T. Wade, Anne M. Stringer

Spatiotemporal localization of proteins in mycobacteria

Cell Reports(2021)10.1016/j.celrep.2021.110154

N/A

0DataRank · unranked

38 citations

Ian D. Wolf, Charles L. Dulberger, Harim I. Won, Jemila C. Kester, Julius Judd +10 more

Fluorescence Imaging-Based Discovery of Membrane Domain-Associated Proteins in Mycobacterium smegmatis

Journal of Bacteriology(2021)10.1128/jb.00419-21

N/A

0DataRank · unranked

8 citations

James R. Brenner, Alexander Dills, Julius J. Judd, Jemila C. Kester, Julia Puffal +9 more

Identification of novel translated small ORFs in Escherichia coli using complementary ribosome profiling approaches

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.02.450978

N/A

0DataRank · unranked

2 citations

Carol Smith, Kyle Mangano, Joseph T. Wade, Anne M. Stringer

Fluorescence Imaging-Based Discovery of Membrane Domain-Associated Proteins in Mycobacterium smegmatis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.17.431749

N/A

0DataRank · unranked

0 citations

James R. Brenner, Alexander Dills, Julius Judd, Jemila C. Kester, Julia Puffal +6 more

Transcription-Translation Coupling in Bacteria

Annual Review of Genetics(2022)10.1146/annurev-genet-072220-033342

N/A

0DataRank · unranked

62 citations

Joseph T. Wade, Gregor Blaha

Promoter selectivity of the RhlR quorum-sensing transcription factor receptor in Pseudomonas aeruginosa is coordinated by distinct and overlapping dependencies on C4-homoserine lactone and PqsE

PLoS Genetics(2023)10.1371/journal.pgen.1010900

N/A

0DataRank · unranked

27 citations

Nathalie J. Colón Torres, Anne M. Stringer, Lia I. Prager, Matthew W. Brockley, Charity McManaman +3 more

Genome-Wide Mapping of the Escherichia coli PhoB Regulon Reveals Many Transcriptionally Inert, Intragenic Binding Sites

mBio(2023)10.1128/mbio.02535-22

N/A

0DataRank · unranked

22 citations

Anne M. Stringer, Carol Smith, Pascal Lapierre, Joseph T. Wade, Devon M. Fitzgerald

Promoter selectivity of the RhlR quorum-sensing transcription factor receptor in Pseudomonas aeruginosa is coordinated by distinct and overlapping dependencies on C 4 -homoserine lactone and PqsE

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.07.552226

N/A

0DataRank · unranked

3 citations

Nathalie J. Colón Torres, Anne M. Stringer, Lia I. Prager, Matthew W. Brockley, Charity McManaman +3 more

Genome-wide mapping of the Escherichia coli PhoB regulon reveals many transcriptionally inert, intragenic binding sites

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.07.527549

N/A

0DataRank · unranked

1 citations

Anne M. Stringer, Carol Smith, Pascal Lapierre, Joseph T. Wade, Devon M. Fitzgerald

The small mycobacterial ribosomal protein, bS22, modulates aminoglycoside accessibility to its 16S rRNA helix-44 binding site

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.31.535098

N/A

0DataRank · unranked

1 citations

Ayush Deep, Manjuli R. Sharma, Jill G. Canestrari, Melissa M. Stone, Carol Smith +8 more

Diversification of the Rho transcription termination factor in bacteria

Nucleic Acids Research(2024)10.1093/nar/gkae582

N/A

0DataRank · unranked

16 citations

Te‐yuan Chyou, Joseph T. Wade, Chris M. Brown, Sofia Magalhães Moreira

Direct and indirect control of Rho-dependent transcription termination by theEscherichia coli lysCriboswitch

RNA(2024)10.1261/rna.079779.123

N/A

0DataRank · unranked

8 citations

Shirin Jahangirnejad, Adrien Chauvier, Anne M. Stringer, Alexey Korepanov, Jean Phillippe Côté +3 more

Mapping the Escherichia coli DnaA-binding landscape reveals a preference for binding pairs of closely spaced DNA sites

Microbiology(2024)10.1099/mic.0.001474

N/A

0DataRank · unranked

5 citations

Devon M. Fitzgerald, Joseph T. Wade, Anne M. Stringer

Regulation of magnesium ion transport in Escherichia coli : insights into the role of the 5’ upstream region in corA expression

RNA Biology(2024)10.1080/15476286.2024.2421665

N/A

0DataRank · unranked

4 citations

Annie Michaud, Fanny Quenette, Neha Singh, Fátima Martins, Joseph T. Wade +3 more

A bacterial regulatory uORF senses multiple classes of ribosome-targeting antibiotics

eLife(2024)10.7554/elife.101217

N/A

0DataRank · unranked

3 citations

Joseph T. Wade, Gabriele Baniulyte

A Cryptic Prophage Transcription Factor Drives Phenotypic Changes via Host Gene Regulation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.21.614188

N/A

0DataRank · unranked

3 citations

Víctor H. Tierrafría, Laura Gómez-Romero, Anne M. Stringer, Julio Collado‐Vides, Joseph T. Wade +2 more

A bacterial regulatory uORF senses multiple classes of ribosome-targeting antibiotics

eLife(2024)10.7554/elife.101217.1

N/A

0DataRank · unranked

0 citations

Joseph T. Wade, Gabriele Baniulyte

Author Response: A bacterial regulatory uORF senses multiple classes of ribosome-targeting antibiotics

(2024)10.7554/elife.101217.1.sa4

N/A

0DataRank · unranked

0 citations

Joseph T. Wade, Gabriele Baniulyte

Translational coupling of neighboring genes in prokaryotes

Journal of Bacteriology(2025)10.1128/jb.00255-25

N/A

0DataRank · unranked

7 citations

Joseph T. Wade, Kerry M. Brown

Integration of BrfS into the biofilm-controlling cascade promotes sessile Salmonella growth at low temperatures

Biofilm(2025)10.1016/j.bioflm.2025.100254

N/A

0DataRank · unranked

10 citations

Andrea A.E. Mendez, Nicolás R. Figueroa, Carol A. Smith, María P. Folmer, Diego O. Serra +4 more

A bacterial regulatory uORF senses multiple classes of ribosome-targeting antibiotics

eLife(2025)10.7554/elife.101217.4

N/A

0DataRank · unranked

0 citations

Joseph T. Wade, Gabriele Baniulyte

Redefining fundamental concepts of transcription initiation in bacteria

Nature Reviews Genetics(2020)10.1038/s41576-020-0254-8

N/A

0DataRank · unranked

157 citations

Stephen Busby, Joseph T. Wade, Jacques van Helden, Adam P. Arkin, Gary D. Stormo +5 more

Identification of PAM Requirements for the Vibrio cholerae type I-E CRISPR-Cas System

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.24.696430

N/A

0DataRank · unranked

0 citations

Joseph T. Wade, Anne M. Stringer

Polycysteine‐encoding leaderless short ORFs function as cysteine‐responsive attenuators of operonic gene expression in mycobacteria

Molecular Microbiology(2020)10.1111/mmi.14498

N/A

0DataRank · unranked

28 citations

Erica Lasek‐Nesselquist, Ashutosh Upadhyay‬, Martina Rofaeil, Matthew M. Champion, Joseph T. Wade +3 more

Transcriptional profiling of Vibrio cholerae O1 following exposure to human anti- lipopolysaccharide monoclonal antibodies

Pathogens and Disease(2020)10.1093/femspd/ftaa029

N/A

0DataRank · unranked

4 citations

Graham G. Willsey, Kara J. Levinson, Carol Smith, Joseph T. Wade, Nicholas J. Mantis +1 more

Characterization of Primed Adaptation in the Escherichia coli type I-E CRISPR-Cas System

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.10.942821

N/A

0DataRank · unranked

6 citations

Lauren Cooper, Sujatha Kadaba, Shailab Shrestha, Joseph T. Wade, Anne M. Stringer

Joseph T. Wade

Indexed papers

Top data-sharing exemplar

Papers