🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

John T. McCrone

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa

ORCID: 0000-0002-9846-8917

Also affiliated with Infectious Disease Research Institute, University of Washington, Fred Hutch Cancer Center

MedicineMathematicsBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 14 papers. Top paper: “Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2”.

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

Nature Communications(2020)10.1038/s41467-020-18877-9

N/A

0DataRank · unranked

184 citations

Samuel L. Hong, Verity Hill, Guy Baele, Chiara Poletto, Vittoria Colizza +8 more

The effective population size and mutation rate of influenza A virus in acutely infected individuals

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.24.353748

N/A

0DataRank · unranked

11 citations

Robert J. Woods, Arnold S. Monto, Emily T. Martin, Adam S. Lauring, John T. McCrone

Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador

Virus Evolution(2021)10.1093/ve/veab051

N/A

0DataRank · unranked

24 citations

Sully Márquez, Belén Prado-Vivar, Mónica Becerra-Wong, Juan José Guadalupe, Darlan da Silva Cândido +33 more

Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil

medRxiv(2021)10.1101/2021.02.26.21252554

N/A

0DataRank · unranked

206 citations

Thomas A. Mellan, Charles Whittaker, Ingra Morales Claro, Darlan da Silva Cândido, Swapnil Mishra +65 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

medRxiv(2021)10.1101/2021.12.14.21267606

N/A

0DataRank · unranked

17 citations

Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben Lambert, Rhys Inward +35 more

Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador

medRxiv(2021)10.1101/2021.03.31.21254685

N/A

0DataRank · unranked

5 citations

Sully Márquez, Belén Prado-Vivar, Mónica Becerra-Wong, Juan José Guadalupe, Darlan da Silva Cândido +33 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Research Square(2021)10.21203/rs.3.rs-1159614/v1

N/A

0DataRank · unranked

5 citations

John T. McCrone, Verity Hill, Sumali Bajaj, Rosario Evans-Pena, Ben Lambert +35 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Nature(2022)10.1038/s41586-022-05200-3

N/A

0DataRank · unranked

143 citations

Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben Lambert, Rhys Inward +35 more

Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination

Med(2022)10.1016/j.medj.2022.10.002

N/A

0DataRank · unranked

85 citations

Tracy Basler, Simon White, Andrew Dei Rossi, Dana Wyman, Hang Dai +25 more

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Science(2023)10.1126/science.adg6605

N/A

0DataRank · unranked

70 citations

John T. McCrone, Ben Lambert, Sumali Bajaj, Rhys Inward, Paolo Bosetti +35 more

Underdetected dispersal and extensive local transmission drove the 2022 mpox epidemic

Cell(2024)10.1016/j.cell.2024.02.003

N/A

0DataRank · unranked

58 citations

Nashwa Ahmed, Marlin D Figgins, Vittoria Colizza, Philippe Lemey, John T. McCrone +4 more

BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference

Nature Methods(2025)10.1038/s41592-025-02751-x

N/A

0DataRank · unranked

70 citations

Xiang Ji, Gabriel W. Hassler, John T. McCrone, Yucai Shao, Zhenyu Zhang +6 more

HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X

Bioinformatics(2025)10.1093/bioinformatics/btaf488

N/A

0DataRank · unranked

14 citations

Luiz Max Carvalho, Marius Brusselmans, Gytis Dudas, Xiang Ji, John T. McCrone +4 more

Evidence of latency reshapes our understanding of Ebola virus reservoir dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.17.683141

N/A

0DataRank · unranked

3 citations

Guy Baele, Ifeanyi F. Omah, Eddy Kinganda-Lusamaki, Joseph A. Brew, Luiz Max Carvalho +6 more