🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Mohsen Zakeri

Johns Hopkins University

ORCID: 0000-0002-9856-719X

Also affiliated with Johns Hopkins Medicine, University of Maryland, College Park

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 9 papers. Top paper: “Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data”.

Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data

Nature Communications(2025)10.1038/s41467-025-56077-5
N/A
0.744DataRank · unranked
24 citations

Lucas Patel, Yoshihiko Tomofuji, Daniel McDonald, Antonio González, Gregory D. Sepich‐Poore +14 more

AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite

Genome biology(2022)10.1186/s13059-022-02610-4
N/A
0.464DataRank · unranked
21 citations

Fatemeh Almodaresi, Mohsen Zakeri, Joseph N. Paulson, Rob Patro, Artemis G. Hatzigeorgiou +2 more

Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data

Research Square(2024)10.21203/rs.3.rs-4721159/v1
N/A
0.104DataRank · unranked
1 citations

Caitlin Guccione, Lucas Patel, Yoshihiko Tomofuji, Daniel McDonald, Antonio González +13 more

Sigmoni: classification of nanopore signal with a compressed pangenome index

Bioinformatics(2024)10.1093/bioinformatics/btae213
N/A
0DataRank · unranked
27 citations

Omar Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead, Vikram S Shivakumar

Movi Color: fast and accurate long-read classification with the move structure

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.22.655637
N/A
0DataRank · unranked
0 citations

Sina Majidian, Ben Langmead, Mohsen Zakeri, Steven Tan

Alevin-fry unlocks rapid, accurate, and memory-frugal quantification of single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.29.450377
N/A
0DataRank · unranked
13 citations

Mohsen Zakeri, Hirak Sarkar, Charlotte Soneson, Avi Srivastava, Rob Patro +1 more

Movi Color: fast and accurate taxonomic classification with the move structure

PubMed(2025)10.1145/3765612.3767233
N/A
0DataRank · unranked
0 citations

Sina Majidian, Ben Langmead, Mohsen Zakeri, Steven Tan

Movi: a fast and cache-efficient full-text pangenome index

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.04.565615
N/A
0DataRank · unranked
13 citations

Nathaniel K. Brown, Omar Ahmed, Travis Gagie, Ben Langmead, Mohsen Zakeri

Movi: A fast and cache-efficient full-text pangenome index

iScience(2024)10.1016/j.isci.2024.111464
N/A
0DataRank · unranked
32 citations

Nathaniel K. Brown, Omar Ahmed, Travis Gagie, Ben Langmead, Mohsen Zakeri