🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Johnny Yu

University of California, San Francisco

ORCID: 0000-0002-9857-4349

Also affiliated with Rapt Therapeutics (United States), UCSF Helen Diller Family Comprehensive Cancer Center

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Tahoe-100M : A Giga-Scale Single-Cell Perturbation Atlas for Context-Dependent Gene Function and Cellular Modeling

10.1101/2025.02.20.639398
Top 29%
0.698DataRank
Top 29%104 citations

Airol A Ubas, Richard de Borja, Valentine Svensson, Nicole Thomas, Neha Thakar +27 more

Papers

Driven by 13 papers — median percentile 71. Top paper: “The role of APOBEC3B in lung tumor evolution and targeted cancer therapy resistance”.

The role of APOBEC3B in lung tumor evolution and targeted cancer therapy resistance

Nature Genetics(2023)10.1038/s41588-023-01592-8
N/A
1.9DataRank · unranked
88 citations

Philippe Gui, Manasi K. Mayekar, Emily K. Law, Oriol Pich, Chris Bailey +80 more

Tahoe-100M : A Giga-Scale Single-Cell Perturbation Atlas for Context-Dependent Gene Function and Cellular Modeling

10.1101/2025.02.20.639398
Top 29%
0.698DataRank
Top 29%104 citations

Airol A Ubas, Richard de Borja, Valentine Svensson, Nicole Thomas, Neha Thakar +27 more

Targeted cancer therapy induces APOBEC fuelling the evolution of drug resistance

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.18.423280
N/A
0.449DataRank · unranked
19 citations

Deborah R. Caswell, Natalie I. Vokes, Emily K. Law, Wei Wu, William Hill +43 more

hPSC-Derived Enteric Ganglioids Model Human ENS Development and Function

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.04.474746
N/A
0DataRank · unranked
9 citations

Ryan M. Samuel, Jonathan T. Ramirez, Ali Kalantari‐Hesari, Kevin Barber, Zaniar Ghazizadeh +17 more

RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon

Cancer Discovery(2020)10.1158/2159-8290.cd-19-1375
N/A
0DataRank · unranked
65 citations

Albertas Navickas, Hosseinali Asgharian, Bruce Culbertson, Lisa Fish, Kristle Garcia +11 more

SYF2 suppression mitigates neurodegeneration in models of diverse forms of ALS

Cell stem cell(2023)10.1016/j.stem.2023.01.005
N/A
0DataRank · unranked
28 citations

Yichen Li, Wen-Hsuan Chang, Jasper Rubin-Sigler, Stacee Mendonca, Sarah Hong +23 more

Inhibition of muscarinic receptor signaling protects human enteric inhibitory neurons against platin chemotherapy toxicity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.08.531806
N/A
0DataRank · unranked
4 citations

Sina Farahvashi, Ryan M. Samuel, Homa Majd, Angeline K Chemel, Jonathan T. Ramirez +22 more

A systematic search for RNA structural switches across the human transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.11.532161
N/A
0DataRank · unranked
4 citations

Daniel Asarnow, Albertas Navickas, Aidan Winters, Johnny Yu, Simon K. Zhou +8 more

Focal adhesion kinase-YAP signaling axis drives drug-tolerant persister cells and residual disease in lung cancer

Nature Communications(2024)10.1038/s41467-024-47423-0
N/A
0DataRank · unranked
88 citations

Yu‐Ting Chou, Lauren Čech, Celia Fernández-Méndez, Johnny Yu, Victor Olivas +30 more

A systematic search for RNA structural switches across the human transcriptome

Nature Methods(2024)10.1038/s41592-024-02335-1
N/A
0DataRank · unranked
15 citations

Daniel Asarnow, Shaopu Zhou, Albertas Navickas, Aidan Winters, Jackson Goudreau +12 more

A sense-antisense RNA interaction promotes breast cancer metastasis via regulation of NQO1 expression

Nature Cancer(2023)10.1038/s43018-023-00554-7
N/A
0DataRank · unranked
44 citations

Kristle Garcia, Daniel Markett, Hosseinali Asgharian, Li Chen, Lisa Fish +9 more

A focal adhesion kinase-YAP signaling axis drives drug tolerant persister cells and residual disease in lung cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.23.465573
N/A
0DataRank · unranked
18 citations

Celia Fernández-Méndez, Lauren Čech, Johnny Yu, Ismail M. Meraz, Victor Olivas +28 more

A sense-antisense RNA interaction promotes breast cancer metastasis via regulation of NQO1 expression

Research Square(2021)10.21203/rs.3.rs-967511/v1
N/A
0DataRank · unranked
1 citations

Kristle Garcia, Daniel Markett, Hosseinali Asgharian, Li Chen, Lisa Fish +7 more