Katherine S. Pollard

Also affiliated with University of California, San Francisco, Chan Zuckerberg Initiative (United States)

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

28.7Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Papers

Driven by 91 papers — median percentile 91. Top paper: “Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy”.

Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy

Cell(2020)10.1016/j.cell.2020.12.001

N/A

13.6DataRank · unranked

1034 citations

Sungmin Son, María Díaz de León Derby, Gavin J. Knott, Carley N Gray, Michael V. D’Ambrosio +27 more

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2010146117

N/A

13.2DataRank · unranked

685 citations

Graham M. Hughes, Kathleen C. Keough, Corrie Painter, Nicole S. Persky, Marco Corbo +14 more

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

A high-resolution map of human evolutionary constraint using 29 mammals

Nature(2011)10.1038/nature10530

Top 2%

7.6DataRank

Top 2%1227 citations

Genome Institute at Washington University, Manuel Garber, Or Zuk, Alireza Heravi-Moussavi, Wouter Meuleman +49 more

A comparative genomics multitool for scientific discovery and conservation

Nature(2020)10.1038/s41586-020-2876-6

Top 4%

5.0DataRank

Top 4%447 citations

Aitor Serres, Joel Armstrong, Jeremy Johnson, Voichita D. Marinescu, Eva Murén +43 more

Evolutionary constraint and innovation across hundreds of placental mammals

Science(2023)10.1126/science.abn3943

Top 7%

3.0DataRank

Top 7%271 citations

Irene M. Kaplow, Diane P. Genereux, Michael X. Dong, Graham M. Hughes, Xue Li +78 more

A Chromatin Accessibility Atlas of the Developing Human Telencephalon

Cell(2020)10.1016/j.cell.2020.06.002

Top 11%

2.0DataRank

Top 11%108 citations

Sean Whalen, Pawel F. Przytycki, Reuben Thomas, Fadya Binyameen, Tomasz J. Nowakowski +6 more

Relating enhancer genetic variation across mammals to complex phenotypes using machine learning

Science(2023)10.1126/science.abm7993

N/A

2.0DataRank · unranked

90 citations

Alyssa J. Lawler, Daniel E. Schäffer, Chaitanya Srinivasan, Heather H. Sestili, Morgan Wirthlin +82 more

The contribution of historical processes to contemporary extinction risk in placental mammals

Science(2023)10.1126/science.abn5856

N/A

1.9DataRank · unranked

106 citations

Megan A. Supple, Ayshwarya Subramanian, Anish Mudide, Ross Swofford, Aitor Serres‐Armero +87 more

Evolution of the ancestral mammalian karyotype and syntenic regions

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2209139119

Top 12%

1.8DataRank

Top 12%96 citations

Marco Corbo, Kim, Jaebum, Jason Turner-Maier, Marta Farré, Denis M. Larkin +87 more

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Molecular Cell(2023)10.1016/j.molcel.2023.06.018

N/A

1.7DataRank · unranked

97 citations

Frank Alber, Sarah Aufmkolk, Brian J. Beliveau, Benoit G. Bruneau, Andrew S. Belmont +30 more

Structure, function and diversity of the healthy human microbiome

Nature(2012)10.1038/nature11234

N/A

1.4DataRank · unranked

10088 citations

Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger +235 more

Strain-resolved analysis in a randomized trial of antibiotic pretreatment and maintenance dose delivery mode with fecal microbiota transplant for ulcerative colitis

Scientific Reports(2022)10.1038/s41598-022-09307-5

N/A

1.4DataRank · unranked

53 citations

Yvette M. Piceno, Martin Zydek, Bing Zhang, Lara Aboud Syriani, Jonathan P. Terdiman +6 more

Single-cell multi-cohort dissection of the schizophrenia transcriptome

Science(2024)10.1126/science.adg5136

N/A

1.3DataRank · unranked

125 citations

Shahin Mohammadi, José Dávila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan +196 more

Massively parallel characterization of regulatory elements in the developing human cortex

Science(2024)10.1126/science.adh0559

N/A

1.2DataRank · unranked

61 citations

Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F. Przytycki, Fumitaka Inoue +197 more

Integrating gene annotation with orthology inference at scale

Science(2023)10.1126/science.abn3107

N/A

0.804DataRank · unranked

212 citations

Chetan Munegowda, Ekaterina Osipova, David Jebb, Virag Sharma, Moritz Blumer +91 more

Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain

Science(2024)10.1126/science.adh0829

Top 26%

0.765DataRank

Top 26%50 citations

Michael Margolis, Rujia Dai, Pan Zhang, Pawel F. Przytycki, Daniel Vo +95 more

Insights into mammalian TE diversity through the curation of 248 genome assemblies

Science(2023)10.1126/science.abn1430

N/A

0.737DataRank · unranked

135 citations

Nicole S. Paulat, Jennifer M. Korstian, Jenna Grimshaw, Michaela K. Halsey, Kevin A. Sullivan +83 more

Chromatin remodelling drives immune cell–fibroblast communication in heart failure

Nature(2024)10.1038/s41586-024-08085-6

N/A

0.705DataRank · unranked

109 citations

Arun Padmanabhan, Tomohiro Nishino, Joshua G. Travers, Lin Ye, Angelo Pelonero +25 more

Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

Genome Research(2021)10.1101/gr.265058.120

N/A

0.702DataRank · unranked

107 citations

Benjamin H. Good, Nandita R. Garud, Stephen Martis, Mohan Avula, Wenyu Zhou +7 more

SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations

eLife(2023)10.7554/elife.82401

N/A

0.695DataRank · unranked

23 citations

Renuka R. Nayak, Ayushi Agrawal, Peter J. Turnbaugh, Katherine S. Pollard, Annamarie E. Bustion

The functional and evolutionary impacts of human-specific deletions in conserved elements

Science(2023)10.1126/science.abn2253

N/A

0.657DataRank · unranked

79 citations

Ava Mackay-Smith, Kousuke Mouri, Meilín Fernández García, Michael X. Dong, Jared F. Akers +88 more

Meta-Analysis of Vaginal Microbiome Data Provides New Insights Into Preterm Birth

Frontiers in Microbiology(2020)10.3389/fmicb.2020.00476

N/A

0.628DataRank · unranked

65 citations

Svetlana Lyalina, Katherine S. Pollard, Atul Janardhan Butte, Marina Sirota, Idit Kosti

Vocal learning–associated convergent evolution in mammalian proteins and regulatory elements

Science(2024)10.1126/science.abn3263

N/A

0.542DataRank · unranked

36 citations

Tobias A. Schmid, Julie E. Elie, Xiaomeng Zhang, Amanda Kowalczyk, Ruby Redlich +89 more

Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs

Science(2023)10.1126/science.abn5887

N/A

0.406DataRank · unranked

14 citations

Heather J. Huson, Kathleen M. Morrill, Mingshan Wang, Xue Li, Krishnamoorthy Srikanth +90 more

Metatranscriptomic investigation of singleIxodes pacificusticks reveals diverse microbes, viruses, and novel mRNA-like endogenous viral elements

mSystems(2024)10.1128/msystems.00321-24

N/A

0.374DataRank · unranked

9 citations

Beth M. Hayes, Domokos Lauko, Edward Midthun, Gloria R. Castañeda, Angela M. Bosco‐Lauth +5 more

Contiguous and complete assemblies of Blastocystis gut microbiome–associated protists reveal evolutionary diversification to host ecology

Genome Research(2025)10.1101/gr.279080.124

N/A

0.373DataRank · unranked

8 citations

Nathan A. McDonald, Elias R. Gerrick, Ami S. Bhatt, Katherine S. Pollard, Abigail Lind

Sequence-Based Machine Learning Reveals 3D Genome Differences between Bonobos and Chimpanzees

Genome Biology and Evolution(2024)10.1093/gbe/evae210

N/A

0.353DataRank · unranked

8 citations

Shuzhen Kuang, Erin N. Gilbertson, Evonne McArthur, Katherine S. Pollard, Timothy H. Webster +2 more

Sequence-based machine learning reveals 3D genome differences between bonobos and chimpanzees

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.26.564272

N/A

0.104DataRank · unranked

1 citations

Shuzhen Kuang, Erin N. Gilbertson, Evonne McArthur, Katherine S. Pollard, Timothy H. Webster +2 more

Genetic determinants of interventricular septal anatomy and the risk of ventricular septal defects and hypertrophic cardiomyopathy

medRxiv(2021)10.1101/2021.04.19.21255650

N/A

0DataRank · unranked

0 citations

Andrew R. Harper, Matthew Aguirre, Maureen Pittman, Catherine Tcheandjieu, Dulguun Amgalan +9 more

Molecular hallmarks of heterochronic parabiosis at single-cell resolution

Nature(2022)10.1038/s41586-022-04461-2

N/A

0DataRank · unranked

149 citations

Andreas Keller, Nicholas Schaum, Weilun Tan, Tobias Fehlmann, Michael Borja +95 more

Single-cell epigenomics reveals mechanisms of human cortical development

Nature(2021)10.1038/s41586-021-03209-8

N/A

0DataRank · unranked

299 citations

Chang N. Kim, Jayden Ross, Amy B. Wilfert, Tychele N. Turner, Maximilian Haeussler +12 more

Transcription factor protein interactomes reveal genetic determinants in heart disease

Cell(2022)10.1016/j.cell.2022.01.021

N/A

0DataRank · unranked

89 citations

Maureen Pittman, Franco Felix, Reuben Thomas, Desmond Richmond-Buccola, Ruth Hüttenhain +23 more

An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.23.218768

N/A

0DataRank · unranked

7 citations

Parisha P. Shah, Ketrin Gjoni, Garrett T. Santini, Nadeera M. Wickramasinghe, Carolyn E. Dundes +12 more

Differential Etv2 threshold requirement for endothelial and erythropoietic development

Cell Reports(2022)10.1016/j.celrep.2022.110881

N/A

0DataRank · unranked

24 citations

Kelly Lammerts van Bueren, Diane E. Dickel, Ivana Zlatanova, Reuben Thomas, Carlos O. Lizama +8 more

Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts

Frontiers in Bioinformatics(2022)10.3389/fbinf.2022.867386

N/A

0DataRank · unranked

21 citations

Xiangpeng Li, Zhou Jason Shi, Adam R. Abate, Katherine S. Pollard, Byron J. Smith

Single cell genome sequencing of laboratory mouse microbiota improves taxonomic and functional resolution of this model microbial community

PLoS ONE(2022)10.1371/journal.pone.0261795

N/A

0DataRank · unranked

9 citations

Ramūnas Stepanauskas, Frank Shao-Ying Wu, Shomyseh Sanjabi, Katherine S. Pollard, Svetlana Lyalina

Brain-wide perception of the emotional valence of light is regulated by distinct hypothalamic neurons

Molecular Psychiatry(2022)10.1038/s41380-022-01567-x

N/A

0DataRank · unranked

11 citations

Mahdi Zarei, Matthew Lovett-Barron, Kristina Tyler Poston, Jin Xu, Vince Ramey +6 more

Cell Layers: uncovering clustering structure in unsupervised single-cell transcriptomic analysis

Bioinformatics Advances(2022)10.1093/bioadv/vbac051

N/A

0DataRank · unranked

3 citations

Robert Hu, Elie N. Farah, Neil C Chi, Katherine S. Pollard, Pawel F. Przytycki +3 more

Three-dimensional genome re-wiring in loci with Human Accelerated Regions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.04.510859

N/A

0DataRank · unranked

15 citations

Sean Whalen, Fumitaka Inoue, Pawel F. Przytycki, Tyler Fair, Chengyu Deng +9 more

Single Cell Epigenetics Reveal Cell-Cell Communication Networks in Normal and Abnormal Cardiac Morphogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.25.501458

N/A

0DataRank · unranked

3 citations

Sean Whalen, Ivana Zlatanova, Tomohiro Nishino, Benjamin van Soldt, Lin Ye +13 more

An oligogenic inheritance test detects risk genes and their interactions in congenital heart defects and developmental comorbidities

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.08.487704

N/A

0DataRank · unranked

2 citations

Kihyun Lee, Deepak Srivastava, Katherine S. Pollard, Maureen Pittman

In silico discovery of repetitive elements as key sequence determinants of 3D genome folding

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.11.503410

N/A

0DataRank · unranked

0 citations

Michael J. Keiser, Katherine S. Pollard, Laura M. Gunsalus

Direct detection of SARS-CoV-2 using CRISPR-Cas13a and a mobile phone

medRxiv(2020)10.1101/2020.09.28.20201947

N/A

0DataRank · unranked

59 citations

Sungmin Son, María Díaz de León Derby, Gavin J. Knott, Carley N Gray, Michael V. D’Ambrosio +23 more

Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.16.045302

N/A

0DataRank · unranked

109 citations

Graham M. Hughes, Kathleen C. Keough, Corrie Painter, Nicole S. Persky, Marco Corbo +14 more

Leveraging base-pair mammalian constraint to understand genetic variation and human disease

Science(2023)10.1126/science.abn2937

N/A

0DataRank · unranked

121 citations

Jennifer R. S. Meadows, Steven Gazal, BaDoi N. Phan, Xue Li, Diane P. Genereux +70 more

Molecular basis of CTCF binding polarity in genome folding

Nature Communications(2020)10.1038/s41467-020-19283-x

N/A

0DataRank · unranked

212 citations

Laura Caccianini, Geoffrey Fudenberg, Kevin So, Vasumathi Kameswaran, Abigail Nagle +9 more

Genomic analyses identify hundreds of variants associated with age at menarche and support a role for puberty timing in cancer risk

UNC Libraries(2020)10.17615/2bje-6g29

N/A

0DataRank · unranked

0 citations

Deborah J. Thompson, Hannes Helgason, Timothy M. Frayling, Hilary K. Finucane, Patrick Sulem +211 more

Machine learning dissection of human accelerated regions in primate neurodevelopment

Neuron(2023)10.1016/j.neuron.2022.12.026

N/A

0DataRank · unranked

96 citations

Fumitaka Inoue, Hane Ryu, Tyler Fair, Eirene Markenscoff-Papadimitriou, Kathleen C. Keough +17 more

An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype

Genome biology(2023)10.1186/s13059-023-02849-5

N/A

0DataRank · unranked

80 citations

Kathleen C. Keough, Ketrin Gjoni, Garrett T. Santini, Richard J. Abdill, Nadeera M. Wickramasinghe +13 more

In silico discovery of repetitive elements as key sequence determinants of 3D genome folding

Cell Genomics(2023)10.1016/j.xgen.2023.100410

N/A

0DataRank · unranked

27 citations

Michael J. Keiser, Katherine S. Pollard, Laura M. Gunsalus

Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia

Molecular Biology and Evolution(2023)10.1093/molbev/msad092

N/A

0DataRank · unranked

18 citations

Jessica M. Storer, Diana D. Moreno-Santillán, Austin Osmanski, Kevin A. Sullivan, Jenna Grimshaw +85 more

Genetic Determinants of the Interventricular Septum Are Linked to Ventricular Septal Defects and Hypertrophic Cardiomyopathy

Circulation Genomic and Precision Medicine(2023)10.1161/circgen.122.003708

N/A

0DataRank · unranked

8 citations

Andrew R. Harper, Matthew Aguirre, Maureen Pittman, Catherine Tcheandjieu, Dulguun Amgalan +9 more

Identifying species-specific k-mers for fast and accurate metagenotyping with Maast and GT-Pro

STAR Protocols(2023)10.1016/j.xpro.2022.101964

N/A

0DataRank · unranked

2 citations

Stephen Nayfach, Katherine S. Pollard, Zhou Jason Shi

Massively parallel characterization of psychiatric disorder-associated and cell-type-specific regulatory elements in the developing human cortex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.15.528663

N/A

0DataRank · unranked

18 citations

Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F. Przytycki, Fumitaka Inoue +9 more

Comparing chromatin contact maps at scale: methods and insights

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.04.535480

N/A

0DataRank · unranked

13 citations

Evonne McArthur, Ketrin Gjoni, Shuzhen Kuang, Maureen Pittman, John A. Capra +2 more

Comparing chromatin contact maps at scale: methods and insights

Research Square(2023)10.21203/rs.3.rs-2842981/v1

N/A

0DataRank · unranked

3 citations

Evonne McArthur, Ketrin Gjoni, Shuzhen Kuang, Maureen Pittman, John A. Capra +2 more

Exploring the Roles of RNAs in Chromatin Architecture Using Deep Learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.22.563498

N/A

0DataRank · unranked

3 citations

Katherine S. Pollard, Shuzhen Kuang

FTLD targets brain regions expressing recently evolved genes

medRxiv(2023)10.1101/2023.10.27.23297687

N/A

0DataRank · unranked

1 citations

Felipe Luiz Pereira, Sahba Seddighi, Yi Zeng, Yongbin Wei, Ignacio Illán‐Gala +19 more

Contiguous and complete assemblies of Blastocystis gut microbiome-associated protists reveal evolutionary diversification to host ecology

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.20.567959

N/A

0DataRank · unranked

1 citations

Nathan A. McDonald, Elias R. Gerrick, Ami S. Bhatt, Katherine S. Pollard, Abigail Lind

SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.03.565556

N/A

0DataRank · unranked

0 citations

Katherine S. Pollard, Ketrin Gjoni

ChromaFactor: deconvolution of single-molecule chromatin organization with non-negative matrix factorization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.22.568268

N/A

0DataRank · unranked

0 citations

Michael J. Keiser, Katherine S. Pollard, Laura M. Gunsalus

Exploring the roles of RNAs in chromatin architecture using deep learning

Nature Communications(2024)10.1038/s41467-024-50573-w

N/A

0DataRank · unranked

20 citations

Katherine S. Pollard, Shuzhen Kuang

Systematic decoding of cis gene regulation defines context-dependent control of the multi-gene costimulatory receptor locus in human T cells

Nature Genetics(2024)10.1038/s41588-024-01743-5

N/A

0DataRank · unranked

14 citations

Jacob W. Freimer, Zeyu Chen, Salvador Casaní-Galdón, Jennifer M. Umhoefer, Maya M. Arce +17 more

SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models

Bioinformatics(2024)10.1093/bioinformatics/btae340

N/A

0DataRank · unranked

12 citations

Katherine S. Pollard, Ketrin Gjoni

Machine Learning Reveals the Diversity of Human 3D Chromatin Contact Patterns

Molecular Biology and Evolution(2024)10.1093/molbev/msae209

N/A

0DataRank · unranked

12 citations

Colin M. Brand, Evonne McArthur, David C. Rinker, Shuzhen Kuang, Katherine S. Pollard +2 more

Sustained mucosal colonization and fecal metabolic dysfunction by Bacteroides associates with fecal microbial transplant failure in ulcerative colitis patients

Scientific Reports(2024)10.1038/s41598-024-62463-8

N/A

0DataRank · unranked

9 citations

Kevin M. Magnaye, Emily Stryker, Jacqueline Moltzau Anderson, Cara E. Porsche, Sandra Hertz +8 more

Frontotemporal lobar degeneration targets brain regions linked to expression of recently evolved genes

Brain(2024)10.1093/brain/awae205

N/A

0DataRank · unranked

7 citations

Felipe Luiz Pereira, Sahba Seddighi, Yi Zeng, Yongbin Wei, Ignacio Illán‐Gala +19 more

Hierarchical annotation of eQTLs by H-eQTL enables identification of genes with cell type-divergent regulation

Genome biology(2024)10.1186/s13059-024-03440-2

N/A

0DataRank · unranked

4 citations

Katherine S. Pollard, Pawel F. Przytycki

Cis-Regulatory Element and Transcription Factor Circuitry Required for Cell-Type Specific Expression of FOXP3

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.30.610436

N/A

0DataRank · unranked

3 citations

Maya M. Arce, Sean Whalen, Rama Dajani, Laine Goudy, Sivakanthan Kasinathan +22 more

Comparative characterization of human accelerated regions in neurons

Nature(2025)10.1038/s41586-025-08622-x

N/A

0DataRank · unranked

22 citations

Han Yang, Charles Q. Cai, Cooper Beaman, Xiaoyu Yang, Hongjiang Liu +14 more

FOXP3 expression depends on cell-type-specific cis-regulatory elements and transcription factor circuitry

Immunity(2025)10.1016/j.immuni.2025.10.020

N/A

0DataRank · unranked

6 citations

Maya M. Arce, Sivakanthan Kasinathan, Sean Whalen, Rama Dajani, Sanjana Subramanya +25 more

Comparing chromatin contact maps at scale: methods and insights

Nature Methods(2025)10.1038/s41592-025-02630-5

N/A

0DataRank · unranked

5 citations

Laura M. Gunsalus, Shuzhen Kuang, Evonne McArthur, Maureen Pittman, John A. Capra +2 more

CellWalker2: Multi-omic discovery using hierarchical cell type relationships

Cell Genomics(2025)10.1016/j.xgen.2025.100886

N/A

0DataRank · unranked

1 citations

Pawel F. Przytycki, Katherine S. Pollard, Zhirui Hu

Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.09.632202

N/A

0DataRank · unranked

12 citations

Shuzhen Kuang, Shu Zhang, Abraham J. Horrillo, Kavitha S. Rao, Vasumathi Kameswaran +11 more

Oxytocin receptor controls promiscuity and development in prairie voles

eLife(2025)10.7554/elife.104889

N/A

0DataRank · unranked

2 citations

Kristen M. Berendzen, Amanda Everitt, Belinda Wang, Gina Williams, Shuyu Wang +18 more

Comparative evaluation of genomic footprinting algorithms for predicting transcription factor binding sites in single-cell data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.07.669008

N/A

0DataRank · unranked

1 citations

Sean Whalen, Katherine S. Pollard, Amanda Everitt

Accelerated RNA detection using tandem CRISPR nucleases

Nature Chemical Biology(2021)10.1038/s41589-021-00842-2

N/A

0DataRank · unranked

265 citations

Gavin J. Knott, Dylan C. J. Smock, John J. Desmarais, Sungmin Son, Abdul Bhuiya +43 more

ChromaFactor: Deconvolution of single-molecule chromatin organization with non-negative matrix factorization

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012841

N/A

0DataRank · unranked

0 citations

Michael J. Keiser, Katherine S. Pollard, Laura M. Gunsalus

Human gut bacterial metabolism drives Th17 activation and colitis

Cell Host & Microbe(2021)10.1016/j.chom.2021.11.001

N/A

0DataRank · unranked

264 citations

Qi Yan Ang, Renuka R. Nayak, Annamarie E. Bustion, Moriah Sandy, Bing Zhang +5 more

Caloric restriction disrupts the microbiota and colonization resistance

Nature(2021)10.1038/s41586-021-03663-4

N/A

0DataRank · unranked

211 citations

Jordan E. Bisanz, Svetlana Lyalina, Peter Spanogiannopoulos, Qi Yan Ang, Jingwei Cai +13 more

CellWalker integrates single-cell and bulk data to resolve regulatory elements across cell types in complex tissues

Genome biology(2021)10.1186/s13059-021-02279-1

N/A

0DataRank · unranked

25 citations

Katherine S. Pollard, Pawel F. Przytycki

Systematic identification of non-canonical transcription factor motifs

BMC Molecular and Cell Biology(2021)10.1186/s12860-021-00382-6

N/A

0DataRank · unranked

6 citations

Md. Abul Hassan Samee, Katherine S. Pollard, Luis Chumpitaz-Diaz

Genome-wide variability in recombination activity is associated with meiotic chromatin organization

Genome Research(2021)10.1101/gr.275358.121

N/A

0DataRank · unranked

24 citations

Geoffrey Fudenberg, Katherine S. Pollard, Xiaofan Jin

Accelerated RNA detection using tandem CRISPR nucleases

medRxiv(2021)10.1101/2021.03.19.21253328

N/A

0DataRank · unranked

21 citations

Gavin J. Knott, Dylan C. J. Smock, John J. Desmarais, Sungmin Son, Abdul Bhuiya +29 more

Publisher Correction: Accelerated RNA detection using tandem CRISPR nucleases

Nature Chemical Biology(2021)10.1038/s41589-021-00882-8

N/A

0DataRank · unranked

8 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.27.428524

N/A

0DataRank · unranked

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medRxiv(2021)10.1101/2021.08.07.21261556

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0DataRank · unranked

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N/A

0DataRank · unranked

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bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.05.423837

N/A

0DataRank · unranked

2 citations

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