Jeffrey P. Townsend

Also affiliated with Yale University, Epigenomics (Germany)

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 34 papers. Top paper: “Transcription factor-dependent regulatory networks of sexual reproduction in Fusarium graminearum”.

Transcription factor-dependent regulatory networks of sexual reproduction in Fusarium graminearum

mBio(2024)10.1128/mbio.03030-24

N/A

0.208DataRank · unranked

3 citations

Da‐Woon Kim, Zheng Wang, Meng Liu, Jeffrey P. Townsend, Frances Trail +1 more

Optimal COVID-19 quarantine and testing strategies

medRxiv(2020)10.1101/2020.10.27.20211631

N/A

0DataRank · unranked

25 citations

Jeffrey P. Townsend, Abhishek Pandey, Seyed M. Moghadas, Gary R. Krieger, Burton H. Singer +4 more

Attribution of Cancer Origins to Endogenous, Exogenous, and Actionable Mutational Processes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.24.352989

N/A

0DataRank · unranked

5 citations

Jeffrey D. Mandell, Jeffrey P. Townsend, Vincent L. Cannataro

Identifying Modules of Cooperating Cancer Drivers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.29.168229

N/A

0DataRank · unranked

3 citations

Vincent L. Cannataro, Jeffrey P. Townsend, Scott Newman, David F. Stern, Luca Pinello +1 more

Optimal COVID-19 quarantine and testing strategies

Nature Communications(2021)10.1038/s41467-020-20742-8

N/A

0DataRank · unranked

226 citations

Jeffrey P. Townsend, Abhishek Pandey, Seyed M. Moghadas, Gary R. Krieger, Burton H. Singer +4 more

Environmental and sex-specific molecular signatures of glioma causation

Neuro-Oncology(2021)10.1093/neuonc/noab103

N/A

0DataRank · unranked

48 citations

Vincent L. Cannataro, Stephen G. Gaffney, Jeffrey P. Townsend, Elizabeth B. Claus

Identifying modules of cooperating cancer drivers

Molecular Systems Biology(2021)10.15252/msb.20209810

N/A

0DataRank · unranked

26 citations

Vincent L. Cannataro, Jeffrey P. Townsend, Scott Newman, David F. Stern, Luca Pinello +1 more

The somatic molecular evolution of cancer: Mutation, selection, and epistasis

Progress in Biophysics and Molecular Biology(2021)10.1016/j.pbiomolbio.2021.08.003

N/A

0DataRank · unranked

23 citations

Jason A. Somarelli, Sudhir Kumar, Jeffrey P. Townsend, Krishna Dasari

Mechanistic basis of post-treatment control of SIV after anti-α4β7 antibody therapy

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009031

N/A

0DataRank · unranked

9 citations

Youfang Cao, David P. Durham, Siddappa N. Byrareddy, Aftab A. Ansari, Nancy H. Ruddle +4 more

Heavy mutagenesis by tobacco leads to lung adenocarcinoma tumors with KRAS G12 mutations other than G12D, leading KRAS G12D tumors—on average—to exhibit a lower mutation burden

Lung Cancer(2021)10.1016/j.lungcan.2021.10.008

N/A

0DataRank · unranked

7 citations

Jeffrey D. Mandell, Krishna Dasari, Vincent L. Cannataro, Jorge A. Alfaro-Murillo, Jeffrey P. Townsend +1 more

Quarantine and testing strategies to ameliorate transmission due to travel during the COVID-19 pandemic: a modelling study

medRxiv(2021)10.1101/2021.04.25.21256082

N/A

0DataRank · unranked

15 citations

Abhishek Pandey, Meagan C. Fitzpatrick, William Crystal, Burton H. Singer, Seyed M. Moghadas +3 more

Attribution of Cancer Origins to Endogenous, Exogenous, and Preventable Mutational Processes

Molecular Biology and Evolution(2022)10.1093/molbev/msac084

N/A

0DataRank · unranked

44 citations

Jeffrey D. Mandell, Jeffrey P. Townsend, Vincent L. Cannataro

Differential Expression of Cell Wall Remodeling Genes Is Part of the Dynamic Phase-Specific Transcriptional Program of Conidial Germination of Trichoderma asperelloides

Journal of Fungi(2022)10.3390/jof8080854

N/A

0DataRank · unranked

16 citations

Elizabeta Yakubovich, Zheng Wang, Francesc López‐Giráldez, Yujia Tu, Jeffrey P. Townsend +2 more

A phylogenetic approach to study the evolution of somatic mutational processes in cancer

Communications Biology(2022)10.1038/s42003-022-03560-0

N/A

0DataRank · unranked

12 citations

Tracy Vu, Jiyeong Choi, Jeffrey P. Townsend, Sajjad Karim, Sudhir Kumar +1 more

Clone Phylogenetics Reveals Metastatic Tumor Migrations, Maps, and Models

Cancers(2022)10.3390/cancers14174326

N/A

0DataRank · unranked

9 citations

Sayaka Miura, Lauren E Hamilton, Tracy Vu, Stephen G. Gaffney, Vivian Aly +5 more

Placing human gene families into their evolutionary context

Human Genomics(2022)10.1186/s40246-022-00429-5

N/A

0DataRank · unranked

15 citations

Rittika Mallik, Zheng Wang, Moisés A. Bernal, Brian Thompson, Elspeth A. Bruford +6 more

APOBEC mutagenesis and selection for NFE2L2 contribute to the origin of lung squamous-cell carcinoma

Lung Cancer(2022)10.1016/j.lungcan.2022.07.004

N/A

0DataRank · unranked

6 citations

Shalley N. Kudalkar, Krishna Dasari, Stephen G. Gaffney, Heather Lazowski, Laura Jackson +6 more

Pairwise and higher-order epistatic effects among somatic cancer mutations across oncogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.20.477132

N/A

0DataRank · unranked

5 citations

Jeffrey P. Townsend, Jorge A. Alfaro-Murillo

Lineage-specific genes are clustered with allorecognition loci and respond to G × E factors regulating the switch from asexual to sexual reproduction in Neurospora

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.10.495464

N/A

0DataRank · unranked

3 citations

Yaning Wang, Takao Kasuga, Yen‐Wen Wang, Francesc López‐Giráldez, Yang Zhang +7 more

Pairwise and higher-order epistatic effects among somatic cancer mutations across oncogenesis

Mathematical Biosciences(2023)10.1016/j.mbs.2023.109091

N/A

0DataRank · unranked

17 citations

Jeffrey P. Townsend, Jorge A. Alfaro-Murillo

The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics

Frontiers in Fungal Biology(2023)10.3389/ffunb.2023.1214537

N/A

0DataRank · unranked

22 citations

Wonyong Kim, Yen‐Wen Wang, Elizabeta Yakubovich, Caihong Dong, Frances Trail +3 more

Lineage-specific genes are clustered with HET-domain genes and respond to environmental and genetic manipulations regulating reproduction in Neurospora

PLoS Genetics(2023)10.1371/journal.pgen.1011019

N/A

0DataRank · unranked

5 citations

Yen‐Wen Wang, Takao Kasuga, Francesc López‐Giráldez, Yang Zhang, Zhang Zhang +7 more

Tracing the evolution of single-cell cancer 3D genomes: an atlas for cancer gene discovery

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.23.550157

N/A

0DataRank · unranked

2 citations

Shengyan Jin, Sherry S. Agabiti, Tyler B Jensen, Tianqi Yang, Jonathan S. D. Radda +7 more

Data from Estimation of Neutral Mutation Rates and Quantification of Somatic Variant Selection Using cancereffectsizeR

(2023)10.1158/0008-5472.c.6514403

N/A

0DataRank · unranked

0 citations

Vincent L. Cannataro, Jeffrey P. Townsend, Jeffrey D. Mandell

Data from Estimation of Neutral Mutation Rates and Quantification of Somatic Variant Selection Using cancereffectsizeR

(2023)10.1158/0008-5472.c.6514403.v1

N/A

0DataRank · unranked

0 citations

Vincent L. Cannataro, Jeffrey P. Townsend, Jeffrey D. Mandell

Corrigendum: The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics

Frontiers in Fungal Biology(2024)10.3389/ffunb.2024.1478516

N/A

0DataRank · unranked

0 citations

Wonyong Kim, Yen‐Wen Wang, Elizabeta Yakubovich, Caihong Dong, Frances Trail +3 more

Precision projections of the delay of resistance mutations in non-small cell lung cancer via suppression of APOBEC

Lung Cancer(2025)10.1016/j.lungcan.2025.108487

N/A

0DataRank · unranked

4 citations

Jeffrey D. Mandell, Karen S. Anderson, Jeffrey P. Townsend, Orestis Nousias

Applying multilevel selection to understand cancer evolution and progression

PLoS Biology(2025)10.1371/journal.pbio.3003290

N/A

0DataRank · unranked

7 citations

Anaïs Lamoureux, Harley I. Richker, Gissel Marquez Alcaraz, Angelo Fortunato, Zachary Shaffer +6 more

Rates of Evolution of Developmental Changes in Gene Expression in Sordariomycetes

Molecular Biology and Evolution(2025)10.1093/molbev/msaf131

N/A

0DataRank · unranked

2 citations

Fen Wang, Guoliang Meng, Francesc López‐Giráldez, Caihong Dong, Zheng Wang +2 more

DMEM and EMEM are suitable surrogate media to mimic host environment and expand leptospiral pathogenesis studies using in vitro tools

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.22.634353

N/A

0DataRank · unranked

0 citations

Zitong Lin, Sophie Culos, M. Catherine Muenker, Emily Johnson, Zheng Wang +9 more

Competing Subclones and Fitness Diversity Shape Tumor Evolution Across Cancer Types

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.31.657191

N/A

0DataRank · unranked

0 citations

Jingmin Shu, Rekha Mudappathi, Elaine Li, Panwen Wang, Leif Bergsagel +8 more

Germline predisposition to oncogenic alkylating damage in colorectal cancer

medRxiv(2025)10.1101/2025.06.30.25330572

N/A

0DataRank · unranked

0 citations

Jules Cazaubiel, Chichun Tan, Brendan Reardon, Matan Hofree, Tomotaka Ugai +7 more

Non-Coding Mutations in Urothelial Bladder Cancer: Biological and Clinical Relevance and Potential Utility as Biomarkers

Bladder Cancer(2020)10.3233/blc-200278

N/A

0DataRank · unranked

10 citations

Christopher N. Cross, Jeffrey P. Townsend, Alexander Yang

Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

Cancer Epidemiology Biomarkers & Prevention(2025)10.1158/1055-9965.epi-25-1006

N/A

0DataRank · unranked

0 citations

Jules Cazaubiel, Chichun Tan, Brendan Reardon, Matan Hofree, Tomotaka Ugai +7 more