Sudhir Kumar

Chaudhary Charan Singh Haryana Agricultural University

Also affiliated with World Healthal Trust, Temple University

Biochemistry, Genetics and Molecular BiologyEarth and Planetary Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

27.0Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

Molecular Biology and Evolution(2007)10.1093/molbev/msm092

Top 1%

13.7DataRank

Top 1%28845 citations

M. Nei, Koichiro Tamura, Joel T. Dudley, Sudhir Kumar

Papers

Driven by 83 papers — median percentile 64. Top paper: “MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0”.

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

Molecular Biology and Evolution(2007)10.1093/molbev/msm092

Top 1%

13.7DataRank

Top 1%28845 citations

M. Nei, Koichiro Tamura, Joel T. Dudley, Sudhir Kumar

Human Protein Reference Database--2009 update

Nucleic Acids Research(2009)10.1093/nar/gkn892

Top 1%

11.7DataRank

Top 1%3321 citations

R. Goel, K. Kandasamy, S. Keerthikumar, Sudhir Kumar, S Mathivanan +49 more

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Molecular Biology and Evolution(2013)10.1093/molbev/mst197

N/A

1.6DataRank · unranked

47782 citations

Glen Stecher, Daniel Peterson, Alan Filipski, Sudhir Kumar, Daniel S. Peterson +1 more

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Molecular Biology and Evolution(2016)10.1093/molbev/msw054

N/A

1.6DataRank · unranked

45285 citations

Glen Stecher, Koichiro Tamura, Sudhir Kumar

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Molecular Biology and Evolution(2018)10.1093/molbev/msy096

N/A

1.6DataRank · unranked

38234 citations

Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura, Sudhir Kumar

MEGA11: Molecular Evolutionary Genetics Analysis Version 11

Molecular Biology and Evolution(2021)10.1093/molbev/msab120

N/A

1.5DataRank · unranked

21333 citations

Glen Stecher, Sudhir Kumar, Koichiro Tamura

Observation of Gravitational Waves from a Binary Black Hole Merger

Physical Review Letters(2016)10.1103/physrevlett.116.061102

N/A

1.4DataRank · unranked

14058 citations

R. Abbott, T. D. Abbott, M. R. Abernathy, F. Acernese, K. Ackley +1071 more

Human genomic disease variants: A neutral evolutionary explanation

Genome Research(2012)10.1101/gr.133702.111

N/A

1.4DataRank · unranked

52 citations

Yuseob Kim, Li Liu, Glenn J. Markov, Kristyn Gerold, Rong Chen +3 more

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

Briefings in Bioinformatics(2004)10.1093/bib/5.2.150

N/A

1.4DataRank · unranked

11796 citations

Sudhir Kumar

Evolutionary Meta-Analysis of Association Studies Reveals Ancient Constraints Affecting Disease Marker Discovery

Molecular Biology and Evolution(2012)10.1093/molbev/mss079

N/A

1.1DataRank · unranked

23 citations

R. Chen, M. Sanderford, Joel T. Dudley, Maxwell Sanderford, Atul Janardhan Butte +1 more

Beaver and Naked Mole Rat Genomes Reveal Common Paths to Longevity

Cell Reports(2020)10.1016/j.celrep.2020.107949

Top 20%

1.0DataRank

Top 20%37 citations

Qianhui Dou, Guangyi Fan, Quanwei Zhang, Maxwell Sanderford, Alaattin Kaya +11 more

Relative Efficiencies of Simple and Complex Substitution Models in Estimating Divergence Times in Phylogenomics

Molecular Biology and Evolution(2020)10.1093/molbev/msaa049

N/A

0.837DataRank · unranked

23 citations

Jose Barba‐Montoya, Louise A. Huuki-Myers, Mary Kathleen Durnan, Sudhir Kumar, Qiqing Tao

Molecular and morphological clocks for estimating evolutionary divergence times

BMC Ecology and Evolution(2021)10.1186/s12862-021-01798-6

N/A

0.613DataRank · unranked

18 citations

Qiqing Tao, Sudhir Kumar, Jose Barba‐Montoya

Completing a molecular timetree of primates

Frontiers in Bioinformatics(2024)10.3389/fbinf.2024.1495417

Top 51%

0.341DataRank

Top 51%7 citations

S. Blair Hedges, Sudhir Kumar, Jack M. Craig

1-Pentacosanol Isolated from Stem Ethanolic Extract of Cayratia trifolia (L.) is A Potential Target for Prostate Cancer-In SILICO Approach

Jordan Journal of Biological Sciences(2021)10.54319/jjbs/140223

N/A

0.319DataRank · unranked

4 citations

Chella Perumal Palanisamy, Subban Ravi, Palanirajan Anusooriya, Shanmughavel Piramanayagam, E. Murugesh +124 more

Molecular timetrees using relaxed clocks and uncertain phylogenies

Frontiers in Bioinformatics(2023)10.3389/fbinf.2023.1225807

N/A

0.274DataRank · unranked

4 citations

Sudip Sharma, Sudhir Kumar, Jose Barba‐Montoya

Completing a molecular timetree of apes and monkeys

Frontiers in Bioinformatics(2023)10.3389/fbinf.2023.1284744

Top 65%

0.208DataRank

Top 65%3 citations

Grace L. Bamba, Jose Barba‐Montoya, S. Blair Hedges, Sudhir Kumar, Jack M. Craig

Migrations of cancer cells through the lens of phylogenetic biogeography

Scientific Reports(2021)10.1038/s41598-021-96215-9

N/A

0DataRank · unranked

10 citations

Sayaka Miura, Olumide Oladeinde, Vivian Aly, Sudhir Kumar, Antonia Chroni

Epistasis produces an excess of invariant sites in neutral molecular evolution

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2018767118

N/A

0DataRank · unranked

3 citations

Sudhir Kumar, Ravi Patel

Molecular and morphological clocks for estimating evolutionary divergence times

Research Square(2021)10.21203/rs.3.rs-29165/v2

N/A

0DataRank · unranked

5 citations

Qiqing Tao, Sudhir Kumar, Jose Barba‐Montoya

Fast and accurate bootstrap confidence limits on genome-scale phylogenies using little bootstraps

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.21.453255

N/A

0DataRank · unranked

4 citations

Sudhir Kumar, Sudip Sharma

TopHap: Rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.13.472454

N/A

0DataRank · unranked

2 citations

Sayaka Miura, Maxwell Sanderford, Tenzin Dolker, Qiqing Tao, Steven Weaver +3 more

Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogenies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.27.437326

N/A

0DataRank · unranked

0 citations

Jose Barba‐Montoya, Sudhir Kumar, Qiqing Tao

Phylomedicine of mutational processes in somatic cancer cell populations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.02.438268

N/A

0DataRank · unranked

0 citations

Tracy Vu, Jiyeong Choi, Sudhir Kumar, Sayaka Miura

Evolutionary Sparse Learning for phylogenomics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.19.452974

N/A

0DataRank · unranked

0 citations

Sudip Sharma, Sudhir Kumar

Molecular and morphological clocks for estimating evolutionary divergence times

Research Square(2021)10.21203/rs.3.rs-29165/v3

N/A

0DataRank · unranked

0 citations

Qiqing Tao, Sudhir Kumar, Jose Barba‐Montoya

Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010006

N/A

0DataRank · unranked

42 citations

Brandon M. Butler, Avishek Kumar, I. Can Kazan, Maxwell Sanderford, Sudhir Kumar +2 more

Embracing Green Computing in Molecular Phylogenetics

Molecular Biology and Evolution(2022)10.1093/molbev/msac043

N/A

0DataRank · unranked

36 citations

Sudhir Kumar

Molecular evidence for SARS-CoV-2 in samples collected from patients with morbilliform eruptions since late 2019 in Lombardy, northern Italy

Environmental Research(2022)10.1016/j.envres.2022.113979

N/A

0DataRank · unranked

27 citations

Marta Canuti, Silvia Bianchi, Sudhir Kumar, Clara Fappani, María Gori +11 more

A phylogenetic approach to study the evolution of somatic mutational processes in cancer

Communications Biology(2022)10.1038/s42003-022-03560-0

N/A

0DataRank · unranked

12 citations

Tracy Vu, Jiyeong Choi, Jeffrey P. Townsend, Sajjad Karim, Sudhir Kumar +1 more

TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity

Bioinformatics(2022)10.1093/bioinformatics/btac186

N/A

0DataRank · unranked

11 citations

Sayaka Miura, Maxwell Sanderford, Tenzin Dolker, Qiqing Tao, Steven Weaver +3 more

Clone Phylogenetics Reveals Metastatic Tumor Migrations, Maps, and Models

Cancers(2022)10.3390/cancers14174326

N/A

0DataRank · unranked

9 citations

Sayaka Miura, Lauren E Hamilton, Tracy Vu, Stephen G. Gaffney, Vivian Aly +5 more

Taming the Selection of Optimal Substitution Models in Phylogenomics by Site Subsampling and Upsampling

Molecular Biology and Evolution(2022)10.1093/molbev/msac236

N/A

0DataRank · unranked

4 citations

Sudhir Kumar, Sudip Sharma

MOCA for Integrated Analysis of Gene Expression and Genetic Variation in Single Cells

Frontiers in Genetics(2022)10.3389/fgene.2022.831040

N/A

0DataRank · unranked

1 citations

Hannah Kim, Sudhir Kumar, Sayaka Miura, Jared Huzar

The origin of eukaryotes and rise in complexity were synchronous with the rise in oxygen

Frontiers in Bioinformatics(2023)10.3389/fbinf.2023.1233281

N/A

0DataRank · unranked

22 citations

Sudhir Kumar, S. Blair Hedges, Jack M. Craig

Protein dynamics provide mechanistic insights about epistasis among common missense polymorphisms

Biophysical Journal(2023)10.1016/j.bpj.2023.01.037

N/A

0DataRank · unranked

11 citations

Paul Campitelli, Ravi Patel, Sudhir Kumar, S. Banu Ozkan, Nicholas J. Ose

Computational Reproducibility of Molecular Phylogenies

Molecular Biology and Evolution(2023)10.1093/molbev/msad165

N/A

0DataRank · unranked

7 citations

Qiqing Tao, Alessandra P. Lamarca, Koichiro Tamura, Sudhir Kumar

Some mechanistic underpinnings of molecular adaptations of SARS-COV-2 spike protein by integrating candidate adaptive polymorphisms with protein dynamics

eLife(2023)10.7554/elife.92063

N/A

0DataRank · unranked

4 citations

Paul Campitelli, Tushar Modi, I. Can Kazan, Sudhir Kumar, S. Banu Ozkan +1 more

Bootstrap confidence for molecular evolutionary estimates from tumor bulk sequencing data

Frontiers in Bioinformatics(2023)10.3389/fbinf.2023.1090730

N/A

0DataRank · unranked

2 citations

Madelyn Shenoy, Maxwell Sanderford, Sudhir Kumar, Sayaka Miura, Jared Huzar

Improving cellular phylogenies through the integrated use of mutation order and optimality principles

Computational and Structural Biotechnology Journal(2023)10.1016/j.csbj.2023.07.018

N/A

0DataRank · unranked

2 citations

Tenzin Dolker, Maxwell Sanderford, Sudhir Kumar, Sayaka Miura

Conditional knock out of cytosolic thioredoxin (Trx) in cardiomyocytes impairs cardiac function and exacerbates ischemia-reperfusion injury

European Heart Journal(2023)10.1093/eurheartj/ehad655.3104

N/A

0DataRank · unranked

1 citations

Sudhir Kumar, K. Fnu, Scott Shurmur, Kumuda C. Das

Methods for Estimating Personal Disease Risk and Phylogenetic Diversity of Hematopoietic Stem Cells

Molecular Biology and Evolution(2023)10.1093/molbev/msad279

N/A

0DataRank · unranked

1 citations

Glenn S. Gerhard, Sudip Sharma, Anastasia Yankovskiy, Sayaka Miura, Sudhir Kumar +1 more

Some mechanistic underpinnings of molecular adaptations of SARS-COV-2 spike protein by integrating candidate adaptive polymorphisms with protein dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.14.557827

N/A

0DataRank · unranked

1 citations

Paul Campitelli, Tushar Modi, I. Can Kazan, Sudhir Kumar, S. Banu Ozkan +1 more

Analyses of allele age and fitness impact reveal human beneficial alleles to be older than neutral controls

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.09.561569

N/A

0DataRank · unranked

1 citations

Alexander Platt, Ravi Patel, Sudhir Kumar, Jody Hey, Alyssa M. Pivirotto

Some mechanistic underpinnings of molecular adaptations of SARS-COV-2 spike protein by integrating candidate adaptive polymorphisms with protein dynamics

(2023)10.7554/elife.92063.1

N/A

0DataRank · unranked

0 citations

Paul Campitelli, Tushar Modi, I. Can Kazan, Sudhir Kumar, S. Banu Ozkan +1 more

Reviewer #2 (Public Review): Some mechanistic underpinnings of molecular adaptations of SARS-COV-2 spike protein by integrating candidate adaptive polymorphisms with protein dynamics

(2023)10.7554/elife.92063.1.sa1

N/A

0DataRank · unranked

0 citations

Paul Campitelli, Tushar Modi, I. Can Kazan, Sudhir Kumar, S. Banu Ozkan +1 more

MEGA12: Molecular Evolutionary Genetic Analysis Version 12 for Adaptive and Green Computing

Molecular Biology and Evolution(2024)10.1093/molbev/msae263

N/A

0DataRank · unranked

1751 citations

Glen Stecher, Michael Suleski, Maxwell Sanderford, Sudip Sharma, Koichiro Tamura +1 more

Discovering Fragile Clades and Causal Sequences in Phylogenomics by Evolutionary Sparse Learning

Molecular Biology and Evolution(2024)10.1093/molbev/msae131

N/A

0DataRank · unranked

11 citations

Sudhir Kumar, Sudip Sharma

Some mechanistic underpinnings of molecular adaptations of SARS-COV-2 spike protein by integrating candidate adaptive polymorphisms with protein dynamics

eLife(2024)10.7554/elife.92063.3

N/A

0DataRank · unranked

6 citations

Paul Campitelli, Tushar Modi, I. Can Kazan, Sudhir Kumar, S. Banu Ozkan +1 more

MEGA12: Molecular Evolutionary Genetic Analysis version 12 for adaptive and green computing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.10.627672

N/A

0DataRank · unranked

28 citations

Glen Stecher, Michael Suleski, Maxwell Sanderford, Sudip Sharma, Koichiro Tamura +1 more

Analyses of allele age and fitness impact reveal human beneficial alleles to be older than neutral controls

eLife(2024)10.7554/elife.93258

N/A

0DataRank · unranked

2 citations

Alexander Platt, Ravi Patel, Sudhir Kumar, Jody Hey, Alyssa M. Pivirotto

Integrating Phylogenies with Chronology to Assemble the Tree of Life

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.17.603989

N/A

0DataRank · unranked

2 citations

Jack M. Craig, Sudhir Kumar, Jose Barba‐Montoya

Analyses of allele age and fitness impact reveal human beneficial alleles to be older than neutral controls

eLife(2024)10.7554/elife.93258.1

N/A

0DataRank · unranked

0 citations

Alexander Platt, Ravi Patel, Sudhir Kumar, Jody Hey, Alyssa M. Pivirotto

Reviewer #2 (Public Review): Analyses of allele age and fitness impact reveal human beneficial alleles to be older than neutral controls

(2024)10.7554/elife.93258.1.sa1

N/A

0DataRank · unranked

0 citations

Alexander Platt, Ravi Patel, Sudhir Kumar, Jody Hey, Alyssa M. Pivirotto

Author Response: Some mechanistic underpinnings of molecular adaptations of SARS-COV-2 spike protein by integrating candidate adaptive polymorphisms with protein dynamics

(2024)10.7554/elife.92063.2.sa3

N/A

0DataRank · unranked

0 citations

Paul Campitelli, Tushar Modi, I. Can Kazan, Sudhir Kumar, S. Banu Ozkan +1 more

Evolutionary sparse learning reveals the shared genetic basis of convergent traits

Nature Communications(2025)10.1038/s41467-025-58428-8

N/A

0DataRank · unranked

9 citations

Sudip Sharma, Ravi Patel, Maxwell Sanderford, Koichiro Tamura, Slobodan Vučetić +3 more

STICI: Split-Transformer with integrated convolutions for genotype imputation

Nature Communications(2025)10.1038/s41467-025-56273-3

N/A

0DataRank · unranked

8 citations

Chong Li, Oveis Jamialahmadi, Raquel Dias, Junjie Chen, Benyamin Jamialahmadi +5 more

Redox shuttle of cytosolic Thioredoxin to mitochondria protects against hyperoxia-mediated alteration of mitochondrial structure and dysfunction

Redox Biology(2025)10.1016/j.redox.2025.103678

N/A

0DataRank · unranked

3 citations

Somasundaram Raghavan, Sudhir Kumar, Kumuda C. Das, Venkatesh Kundumani‐Sridharan

MEGA-GPT: Artificial Intelligence Guidance and Building Analytical Protocols Using MEGA Software

Molecular Biology and Evolution(2025)10.1093/molbev/msaf101

N/A

0DataRank · unranked

7 citations

Sudhir Kumar, John B. Allard

MyESL: A Software for Evolutionary Sparse Learning in Molecular Phylogenetics and Genomics

Molecular Biology and Evolution(2025)10.1093/molbev/msaf224

N/A

0DataRank · unranked

2 citations

Sudip Sharma, Glen Stecher, Michael Suleski, Jun Liu, JIEPING YE +2 more

GenoPath: a pipeline to infer tumor clone composition, mutational history, and metastatic cell migration events from tumor DNA sequencing data

Frontiers in Bioinformatics(2025)10.3389/fbinf.2025.1615834

N/A

0DataRank · unranked

1 citations

Shikha Singh, Sudhir Kumar, Sayaka Miura, R. Tobin

Evolutionary sparse learning with paired species contrast reveals the shared genetic basis of convergent traits

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.08.631987

N/A

0DataRank · unranked

0 citations

Sudip Sharma, Ravi Patel, Maxwell Sanderford, Koichiro Tamura, Slobodan Vučetić +3 more

MyESL: Sparse learning in molecular evolution and phylogenetic analysis

PubMed(2025)10.48550/arxiv.2501.04941

N/A

0DataRank · unranked

0 citations

Sudip Sharma, Glen Stecher, Jun Liu, JIEPING YE, Sudhir Kumar +1 more

TRUHiC: A TRansformer-embedded U-2 Net to enhance Hi-C data for 3D chromatin structure characterization

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.03.29.646133

N/A

0DataRank · unranked

0 citations

Mohammad Erfan Mowlaei, Lingbin Ni, HGSVC Functional Analysis Working Group, Mark J.P. Chaisson, Evan E. Eichler +4 more

Robust and Efficient Confidence Limits for Phylogenomic Inference of Organismal Relationships

Molecular Biology and Evolution(2025)10.1093/molbev/msaf296

N/A

0DataRank · unranked

0 citations

Sudhir Kumar, Sudip Sharma

Completing a molecular timetree of Afrotheria

Frontiers in Bioinformatics(2025)10.3389/fbinf.2025.1710926

Top 100%

0DataRank

Top 100%0 citations

Whitney L. Fisher, Allan S. Thomas, Simon Hedges, Sudhir Kumar, Jack M. Craig

An Evolutionary Metric for Estimating PhyloAges from Bulk Sequencing of Hematopoietic Stem Cells Reveals the Tempo of Blood Aging in Cancer and Longevity

Journal of Molecular Evolution(2025)10.1007/s00239-025-10296-y

N/A

0DataRank · unranked

0 citations

R. Tobin, Walter Wolfsberger, Tarás K. Oleksyk, Sayaka Miura, Glenn S. Gerhard +2 more

Peer Review #1 of "Finding melanoma drugs through a probabilistic knowledge graph (v0.1)"

(2017)10.7287/peerj-cs.106v0.1/reviews/1

N/A

0DataRank · unranked

0 citations

Michel J. Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness +572 more

PathFinder: Bayesian inference of clone migration histories in cancer

Bioinformatics(2020)10.1093/bioinformatics/btaa795

N/A

0DataRank · unranked

18 citations

Antonia Chroni, Koichiro Tamura, Maxwell Sanderford, Olumide Oladeinde, Vivian Aly +3 more

Using a GTR+Γ substitution model for dating sequence divergence when stationarity and time-reversibility assumptions are violated

Bioinformatics(2020)10.1093/bioinformatics/btaa820

N/A

0DataRank · unranked

16 citations

Qiqing Tao, Sudhir Kumar, Jose Barba‐Montoya

A new method for inferring timetrees from temporally sampled molecular sequences

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007046

N/A

0DataRank · unranked

28 citations

Koichiro Tamura, Qiqing Tao, Louise A. Huuki-Myers, Sergei L. Kosakovsky Pond, Jessica M. Priest +3 more

TreeMap: a structured approach to fine mapping of eQTL variants

Bioinformatics(2020)10.1093/bioinformatics/btaa927

N/A

0DataRank · unranked

12 citations

Pramod Bharadwaj Chandrashekar, Biao Zeng, Maxwell Sanderford, Sudhir Kumar, Greg Gibson +1 more

Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data

Scientific Reports(2020)10.1038/s41598-020-59006-2

N/A

0DataRank · unranked

31 citations

Tracy Vu, Jiamin Deng, Tiffany Buturla, Olumide Oladeinde, Jiyeong Choi +2 more

An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.24.311845

N/A

0DataRank · unranked

22 citations

Qiqing Tao, Steven Weaver, Maxwell Sanderford, Marcos A. Caraballo‐Ortiz, Sudip Sharma +3 more

Relative efficiencies of simple and complex substitution models in estimating divergence times in phylogenomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.14.949339

N/A

0DataRank · unranked

3 citations

Jose Barba‐Montoya, Louise A. Huuki-Myers, Mary Kathleen Durnan, Sudhir Kumar, Qiqing Tao

TreeMap: A Structured Approach to Fine Mapping of eQTL Variants

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.31.125880

N/A

0DataRank · unranked

1 citations

Pramod Bharadwaj Chandrashekar, Biao Zeng, Maxwell Sanderford, Sudhir Kumar, Greg Gibson +1 more

Using a GTR+Γ substitution model for dating sequence divergence when stationarity and time-reversibility assumptions are violated

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.09.195487

N/A

0DataRank · unranked

0 citations

Qiqing Tao, Sudhir Kumar, Jose Barba‐Montoya

PathFinder: Bayesian inference of clone migration histories in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.10.197194

N/A

0DataRank · unranked

0 citations

Antonia Chroni, Koichiro Tamura, Maxwell Sanderford, Olumide Oladeinde, Vivian Aly +3 more

Molecular and morphological clocks for estimating evolutionary divergence times

Research Square(2020)10.21203/rs.3.rs-29165/v1

N/A

0DataRank · unranked

0 citations

Qiqing Tao, Sudhir Kumar, Jose Barba‐Montoya

An Evolutionary Portrait of the Progenitor SARS-CoV-2 and Its Dominant Offshoots in COVID-19 Pandemic

Molecular Biology and Evolution(2021)10.1093/molbev/msab118

N/A

0DataRank · unranked

81 citations

Qiqing Tao, Steven Weaver, Maxwell Sanderford, Marcos A. Caraballo‐Ortiz, Sudip Sharma +3 more

The somatic molecular evolution of cancer: Mutation, selection, and epistasis

Progress in Biophysics and Molecular Biology(2021)10.1016/j.pbiomolbio.2021.08.003

N/A

0DataRank · unranked

23 citations

Jason A. Somarelli, Sudhir Kumar, Jeffrey P. Townsend, Krishna Dasari

Evolutionary Sparse Learning for Phylogenomics

Molecular Biology and Evolution(2021)10.1093/molbev/msab227

N/A

0DataRank · unranked

22 citations

Sudip Sharma, Sudhir Kumar

Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogenies

Bioinformatics(2021)10.1093/bioinformatics/btab307

N/A

0DataRank · unranked

15 citations

Jose Barba‐Montoya, Sudhir Kumar, Qiqing Tao

Sudhir Kumar

Indexed papers

Top data-sharing exemplar

Papers