Paul Macklin

Intelligent Systems Research (United States)

Also affiliated with Indiana University Bloomington

MathematicsBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 19 papers. Top paper: “The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View”.

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

Trends in cancer(2020)10.1016/j.trecan.2020.01.004

N/A

6.0DataRank · unranked

268 citations

Vincent B. Young, Joseph D. Skufca, Fiona Ginty, Traci L. Testerman, Alexander T. Pearson +25 more

Merging metabolic modeling and imaging for screening therapeutic targets in colorectal cancer

npj Systems Biology and Applications(2025)10.1038/s41540-025-00494-1

N/A

0.385DataRank · unranked

12 citations

Emma J. Fong, Abigail Coleman, Yukai Huang, Mathias Bigger, Michael E. Doche +7 more

Iterative community-driven development of a SARS-CoV-2 tissue simulator

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.02.019075

N/A

0DataRank · unranked

71 citations

Yafei Wang, Gary An, Maansi Asthana, Andrew Becker, Chase Cockrell +30 more

Maraviroc inhibits SARS-CoV-2 multiplication and s-protein mediated cell fusion in cell culture

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.12.246389

N/A

0DataRank · unranked

39 citations

Katie V. Tieu, Yafei Wang, Michael Getz, Allison Bakovic, Nishank Bhalla +6 more

Forecasting cancer: from precision to predictive medicine

Med(2021)10.1016/j.medj.2021.08.007

N/A

0DataRank · unranked

30 citations

Elizabeth M. Jaffee, Paul Macklin, Vered Stearns, Chenguang Wang, Elana J. Fertig

Elucidating tumor-stromal metabolic crosstalk in colorectal cancer through integration of constraint-based models and LC-MS metabolomics

Metabolic Engineering(2021)10.1016/j.ymben.2021.11.006

N/A

0DataRank · unranked

28 citations

Alireza Delfarah, Patrick E. Gelbach, Emma J. Fong, Paul Macklin, Shannon M. Mumenthaler +3 more

High-throughput microscopy reveals the impact of multifactorial environmental perturbations on colorectal cancer cell growth

GigaScience(2021)10.1093/gigascience/giab026

N/A

0DataRank · unranked

12 citations

Roy Lau, Ahmadreza Ghaffarizadeh, Matthew Brovold, Dipen Vyas, Edwin F. Juarez +7 more

Elucidating Tumor-stromal Metabolic Crosstalk in Colorectal Cancer through Integration of Constraint-Based Models and LC-MS Metabolomics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.28.446227

N/A

0DataRank · unranked

2 citations

Alireza Delfarah, Patrick E. Gelbach, Emma J. Fong, Paul Macklin, Shannon M. Mumenthaler +3 more

Building digital twins of the human immune system: toward a roadmap

npj Digital Medicine(2022)10.1038/s41746-022-00610-z

N/A

0DataRank · unranked

160 citations

Anna Niarakis, Tomáš Helikar, Gary An, Bruce E. Shapiro, Rahuman S. Malik‐Sheriff +5 more

Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation

Frontiers in Digital Health(2022)10.3389/fdgth.2022.1007784

N/A

0DataRank · unranked

113 citations

Mohamed H. Abdel‐Rahman, Boris Aguilar, Alireza Asadpoure, Robert A. Beckman, Lynn L. Borkon +28 more

An agent-based modeling approach for lung fibrosis in response to COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.03.510677

N/A

0DataRank · unranked

6 citations

Michael Getz, Paul Macklin, Ashlee N. Ford Versypt, Mohammad Aminul Islam

An agent-based modeling approach for lung fibrosis in response to COVID-19

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011741

N/A

0DataRank · unranked

17 citations

Michael Getz, Paul Macklin, Ashlee N. Ford Versypt, Mohammad Aminul Islam

PhysiCell Studio: a graphical tool to make agent-based modeling more accessible

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.24.563727

N/A

0DataRank · unranked

5 citations

Daniel Bergman, Blair Lyons, Julie A. Cass, Heber L. Rocha, Marco Ruscone +3 more

Forum on immune digital twins: a meeting report

arXiv (Cornell University)(2023)10.48550/arxiv.2310.18374

N/A

0DataRank · unranked

1 citations

Fred Adler, Gary An, Filippo Castiglione, Stephen Eubank, Luís L. Fonseca +14 more

Forum on immune digital twins: a meeting report

npj Systems Biology and Applications(2024)10.1038/s41540-024-00345-5

N/A

0DataRank · unranked

24 citations

Fred Adler, Gary An, Filippo Castiglione, Stephen Eubank, Luís L. Fonseca +14 more

PhysiCell Studio: a graphical tool to make agent-based modeling more accessible

Gigabyte(2024)10.46471/gigabyte.128

N/A

0DataRank · unranked

15 citations

Daniel Bergman, Blair Lyons, Grant Waldow, Julie A. Cass, Heber L. Rocha +4 more

Building multiscale models with PhysiBoSS, an agent-based modeling tool

Briefings in Bioinformatics(2024)10.1093/bib/bbae509

N/A

0DataRank · unranked

7 citations

Andrea Checcoli, Randy Heiland, Emmanuel Barillot, Paul Macklin, Laurence Calzone +2 more

Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories

Cell(2025)10.1016/j.cell.2025.06.048

N/A

0DataRank · unranked

42 citations

Daniel Bergman, Heber L. Rocha, David Zhou, Eric Cramer, Ian C. McLean +42 more

OrgDyn: feature- and model-based characterization of spatial and temporal organoid dynamics

Bioinformatics(2020)10.1093/bioinformatics/btaa096

N/A

0DataRank · unranked

11 citations

Andrew K. Fraser, Dan Georgess, Alex Seok Choi, Paul Macklin, Joel S. Bader +4 more