Omar Ahmed

Also affiliated with New York Genome Center, New York University, KTH Royal Institute of Technology

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Pan-genomic matching statistics for targeted nanopore sequencing”.

Pan-genomic matching statistics for targeted nanopore sequencing

iScience(2021)10.1016/j.isci.2021.102696

N/A

0.598DataRank · unranked

53 citations

Massimiliano Rossi, Sam Kovaka, Michael C. Schatz, Travis Gagie, Christina Boucher +2 more

Megadepth: efficient coverage quantification for BigWigs and BAMs

Bioinformatics(2021)10.1093/bioinformatics/btab152

N/A

0DataRank · unranked

53 citations

Omar Ahmed, Daniel N. Baker, David Zhang, Leonardo Collado‐Torres, Ben Langmead +1 more

SPUMONI 2: Improved pangenome classification using a compressed index of minimizer digests

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.08.506805

N/A

0DataRank · unranked

3 citations

Massimiliano Rossi, Travis Gagie, Christina Boucher, Ben Langmead, Omar Ahmed

Efficient taxa identification using a pangenome index

Genome Research(2023)10.1101/gr.277642.123

N/A

0DataRank · unranked

14 citations

Massimiliano Rossi, Christina Boucher, Ben Langmead, Omar Ahmed

Movi: a fast and cache-efficient full-text pangenome index

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.04.565615

N/A

0DataRank · unranked

13 citations

Nathaniel K. Brown, Omar Ahmed, Travis Gagie, Ben Langmead, Mohsen Zakeri

Movi: A fast and cache-efficient full-text pangenome index

iScience(2024)10.1016/j.isci.2024.111464

N/A

0DataRank · unranked

32 citations

Nathaniel K. Brown, Omar Ahmed, Travis Gagie, Ben Langmead, Mohsen Zakeri

Sigmoni: classification of nanopore signal with a compressed pangenome index

Bioinformatics(2024)10.1093/bioinformatics/btae213

N/A

0DataRank · unranked

27 citations

Omar Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead, Vikram S Shivakumar

DandD: Efficient measurement of sequence growth and similarity

iScience(2024)10.1016/j.isci.2024.109054

N/A

0DataRank · unranked

12 citations

Omar Ahmed, Ben Langmead, Jessica Bonnie

Taxonomic classification with maximal exact matches in KATKA kernels and minimizer digests

arXiv (Cornell University)(2024)10.48550/arxiv.2402.06935

N/A

0DataRank · unranked

0 citations

Omar Ahmed, Travis Gagie, Jan Holub, Ben Langmead, Giovanni Manzini +2 more

MEM-based pangenome indexing for k -mer queries

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.20.595044

N/A

0DataRank · unranked

0 citations

Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz +2 more

Taxonomic Classification with Maximal Exact Matches in KATKA Kernels and Minimizer Digests

PubMed(2024)10.4230/lipics.sea.2024.10

N/A

0DataRank · unranked

0 citations

Omar Ahmed, Travis Gagie, Jan Holub, Ben Langmead, Giovanni Manzini +2 more

Fast and flexible minimizer digestion with digest

Bioinformatics(2025)10.1093/bioinformatics/btaf368

N/A

0DataRank · unranked

1 citations

Ishmeal Lee, Vikram S Shivakumar, Omar Ahmed, Ben Langmead, Alan Zheng

Mem-based pangenome indexing for k-mer queries

Algorithms for Molecular Biology(2025)10.1186/s13015-025-00272-y

N/A

0DataRank · unranked

1 citations

Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz +2 more

Robust 16S rRNA classification based on a compressed LCA index

Genome Research(2025)10.1101/gr.279846.124

N/A

0DataRank · unranked

2 citations

Christina Boucher, Ben Langmead, Omar Ahmed

Megadepth: efficient coverage quantification for BigWigs and BAMs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.17.423317

N/A

0DataRank · unranked

5 citations

Omar Ahmed, Daniel N. Baker, David Zhang, Leonardo Collado‐Torres, Ben Langmead +1 more

Run-length compressed metagenomic read classification with SMEM-finding and tagging

iScience(2025)10.1016/j.isci.2025.114029

N/A

0DataRank · unranked

0 citations

Omar Ahmed, Jan Fostier, Ben Langmead, Travis Gagie, Lore Depuydt