🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jianfu Li

Jacksonville College

ORCID: 0000-0002-9949-7007

Also affiliated with WinnMed, Mayo Clinic in Florida, The University of Texas Health Science Center at Houston

Computer ScienceBiochemistry, Genetics and Molecular BiologyMedicineSocial Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 18 papers. Top paper: “Deep Learning Approach to Parse Eligibility Criteria in Dietary Supplements Clinical Trials Following OMOP Common Data Model”.

Deep Learning Approach to Parse Eligibility Criteria in Dietary Supplements Clinical Trials Following OMOP Common Data Model

medRxiv(2020)10.1101/2020.09.16.20196022
N/A
0DataRank · unranked
1 citations

Jianfu Li, Yiqi Xu, Nan Wang, Yanshan Wang, Terrence J Adam +3 more

Are synthetic clinical notes useful for real natural language processing tasks: A case study on clinical entity recognition

Journal of the American Medical Informatics Association(2021)10.1093/jamia/ocab112
N/A
0DataRank · unranked
54 citations

Yujia Zhou, Xiaoqian Jiang, Karthik Natarajan, Serguei Pakhomov, Hongfang Liu +2 more

Unpacking adverse events and associations post COVID-19 vaccination: a deep dive into vaccine adverse event reporting system data

Expert Review of Vaccines(2023)10.1080/14760584.2023.2292203
N/A
0DataRank · unranked
14 citations

Sori Kim Lundin, Jianfu Li, Wei Tao, Yifang Dang, Yong Chen +2 more

AE-GPT: Using Large Language Models to Extract Adverse Events from Surveillance Reports-A Use Case with Influenza Vaccine Adverse Events

arXiv (Cornell University)(2023)10.48550/arxiv.2309.16150
N/A
0DataRank · unranked
3 citations

Jianfu Li, Jianping He, Cui Tao, Yiming Li

RefAI: a GPT-powered retrieval-augmented generative tool for biomedical literature recommendation and summarization

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae129
N/A
0DataRank · unranked
60 citations

Jeff Zhao, Manqi Li, Yifang Dang, Evan Y. Yu, Jianfu Li +18 more

AE-GPT: Using Large Language Models to extract adverse events from surveillance reports-A use case with influenza vaccine adverse events

PLoS ONE(2024)10.1371/journal.pone.0300919
N/A
0DataRank · unranked
53 citations

Jianfu Li, Jianping He, Cui Tao, Yiming Li

VaxBot-HPV: a GPT-based chatbot for answering HPV vaccine-related questions

JAMIA Open(2024)10.1093/jamiaopen/ooaf005
N/A
0DataRank · unranked
28 citations

Jianfu Li, Manqi Li, Evan Yu, Danniel Rhee, Muhammad Amith +5 more

Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models

Journal of Biomedical Semantics(2024)10.1186/s13326-024-00318-x
N/A
0DataRank · unranked
25 citations

Yiming Li, Yuanyi Pan, Jinjing Guo, Zenan Sun, Fang Li +3 more

Ensemble pretrained language models to extract biomedical knowledge from literature

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae061
N/A
0DataRank · unranked
19 citations

Qiang Wei, Liang‐Chin Huang, Jianfu Li, Yan Hu, Yao-Shun Chuang +11 more

VaxBot-HPV: A GPT-based Chatbot for Answering HPV Vaccine-related Questions

Research Square(2024)10.21203/rs.3.rs-4876692/v1
N/A
0DataRank · unranked
10 citations

Yiming Li, Jianfu Li, Manqi Li, Evan Yu, Muhammad Amith +4 more

Improving Entity Recognition Using Ensembles of Deep Learning and Fine-tuned Large Language Models: A Case Study on Adverse Event Extraction from Multiple Sources

arXiv (Cornell University)(2024)10.48550/arxiv.2406.18049
N/A
0DataRank · unranked
4 citations

Deepthi Viswaroopan, William He, Jianfu Li, Xu Zuo, Hua Xu +2 more

Extracting Systemic Anticancer Therapy and Response Information From Clinical Notes Following the RECIST Definition

JCO Clinical Cancer Informatics(2024)10.1200/cci.23.00166
N/A
0DataRank · unranked
0 citations

Ashok Kumar, Shuhan Shen, Jianfu Li, Grace Cong, Edward Jin +5 more

Prompting Large Language Models for Clinical Temporal Relation Extraction

arXiv (Cornell University)(2024)10.48550/arxiv.2412.04512
N/A
0DataRank · unranked
0 citations

Laila Rasmy, Haifang Li, Jianfu Li, Zenan Sun, Evan Yu +3 more

Improving entity recognition using ensembles of deep learning and fine-tuned large language models: A case study on adverse event extraction from VAERS and social media

Journal of Biomedical Informatics(2025)10.1016/j.jbi.2025.104789
N/A
0DataRank · unranked
26 citations

Deepthi Viswaroopan, William He, Jianfu Li, Xu Zuo, Hua Xu +2 more

Exploring multimodal large language models on transthoracic Echocardiogram (TTE) tasks for cardiovascular decision support

Journal of Biomedical Informatics(2025)10.1016/j.jbi.2025.104930
N/A
0DataRank · unranked
5 citations

Yiming Li, Zenan Sun, Evan Yu, Ahmed Abdelhameed, Weiguo Cao +13 more

Developing provider digital twins for personalized provider-patient communication via a RAG-based conversational framework

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.12.007
N/A
0DataRank · unranked
1 citations

Yutong Hu, Jianfu Li, Garit Gemeinhardt, Fang Li, Muhammad Amith +4 more

Teleportation: Defense Against Stealing Attacks of Data-Driven Healthcare APIs

IEEE Transactions on Artificial Intelligence(2025)10.1109/tai.2025.3593470
N/A
0DataRank · unranked
0 citations

Zhenyi Wang, Li Shen, Siyu Luan, Fang Li, Gianfranco Doretto +5 more

Bridging the Computational-Experimental Gap: Leveraging Large Language Model to Prioritize Alzheimer’s Therapeutics Based on Comparison of Learning Models

Research Square(2025)10.21203/rs.3.rs-7811754/v1
N/A
0DataRank · unranked
0 citations

Shuteng Niu, Yifeng Xu, Jianfu Li, Xinyue Hu, Duan Liu +6 more