🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jens Nielsen

BioInnovation Institute

ORCID: 0000-0002-9955-6003

Also affiliated with Chalmers University of Technology

Biochemistry, Genetics and Molecular BiologyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
5.5Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An atlas of human metabolism

Science Signaling(2020)10.1126/scisignal.aaz1482
Top 5%
4.4DataRank
Top 5%483 citations

Pınar Kocabaş, Hao Wang, Pierre‐Etienne Cholley, Daniel Cook, Avlant Nilsson +15 more

Papers

Driven by 18 papers — median percentile 89. Top paper: “Systems Biology of Metabolism: A Driver for Developing Personalized and Precision Medicine”.

Systems Biology of Metabolism: A Driver for Developing Personalized and Precision Medicine

Cell Metabolism(2017)10.1016/j.cmet.2017.02.002
N/A
5.3DataRank · unranked
193 citations

Jens Nielsen

Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure

Nature Communications(2020)10.1038/s41467-020-19921-4
N/A
4.7DataRank · unranked
186 citations

Christoph S. Börlin, Filip Buric, Azam Sheikh Muhammad, Rhongzen Chen, Verena Siewers +5 more

An atlas of human metabolism

Science Signaling(2020)10.1126/scisignal.aaz1482
Top 5%
4.4DataRank
Top 5%483 citations

Pınar Kocabaş, Hao Wang, Pierre‐Etienne Cholley, Daniel Cook, Avlant Nilsson +15 more

Genome-Scale Modeling of the Protein Secretory Machinery in Yeast

PLoS ONE(2013)10.1371/journal.pone.0063284
N/A
2.0DataRank · unranked
88 citations

Tobias Österlund, Dina Petranovic, Sergio Bordel, Jens Nielsen, Amir Feizi

iNetModels 2.0: an interactive visualization and database of multi-omics data

Nucleic Acids Research(2021)10.1093/nar/gkab254
Top 18%
1.2DataRank
Top 18%50 citations

Cheng Zhang, Xiangyü Li, Cem Güngör, Buğra Çakmak, Metin Arslantürk +14 more

Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi

mSystems(2019)10.1128/msystems.00012-19
N/A
0.953DataRank · unranked
24 citations

Sylvain Prigent, Sietske Grijseels, Mhairi Workman, Boyang Ji, Jens Nielsen +1 more

Review: Computational Identification of Repeat-containing Proteins and Systems — R0/PR1

(2020)10.1017/qrd.2020.14.pr1
N/A
0DataRank · unranked
0 citations

Jens Nielsen

Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

Nature Methods(2021)10.1038/s41592-021-01197-1
N/A
0DataRank · unranked
1089 citations

Asaph Aharoni, Yariv Brotman, Kévin Contrepois, John C. D’Auria, Jan Ewald +27 more

Fatty acid synthesis is required for breast cancer brain metastasis

Nature Cancer(2021)10.1038/s43018-021-00183-y
N/A
0DataRank · unranked
325 citations

Ahmed Ali, Alba Luengo, David P. Kodack, Amy Deik, Keene L. Abbott +31 more

BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq

Genome biology(2021)10.1186/s13059-021-02386-z
N/A
0DataRank · unranked
9 citations

Jonathan L. Robinson, Jens Nielsen, Lior Pachter, Johan Gustafsson

Metabolic collaboration between cells in the tumor microenvironment has a negligible effect on tumor growth

The Innovation(2024)10.1016/j.xinn.2024.100583
N/A
0DataRank · unranked
10 citations

Fariba Roshanzamir, Anders Hagnestål, Sagar M. Patel, Oseeyi I. Daudu, Donald Becker +3 more

Reframing the role of the objective function in its proper context for metabolic network modeling

Cell Systems(2025)10.1016/j.cels.2025.101298
N/A
0DataRank · unranked
7 citations

William Shao, Mariska Batavia, Roseanne M. Ford, Bernhard Ø. Palsson, Jens Nielsen +4 more

Extensively acquired antimicrobial-resistant bacteria restructure the individual microbial community in post-antibiotic conditions

npj Biofilms and Microbiomes(2025)10.1038/s41522-025-00705-x
N/A
0DataRank · unranked
6 citations

Songwon Lim, Nayeon Park, Byeongsop Song, Nikhil Kirtipal, Jens Nielsen +7 more

MEMOTE for standardized genome-scale metabolic model testing

Nature Biotechnology(2020)10.1038/s41587-020-0446-y
N/A
0DataRank · unranked
558 citations

Moritz E. Beber, Brett G. Olivier, Frank T. Bergmann, Meriç Ataman, Parizad Babaei +64 more

Sources of variation in cell-type RNA-Seq profiles

PLoS ONE(2020)10.1371/journal.pone.0239495
N/A
0DataRank · unranked
23 citations

Felix Held, Jonathan L. Robinson, Elias Björnson, Rebecka Jörnsten, Jens Nielsen +1 more

DSAVE: Detection of misclassified cells in single-cell RNA-Seq data

PLoS ONE(2020)10.1371/journal.pone.0243360
N/A
0DataRank · unranked
3 citations

Jonathan L. Robinson, Juan S. Inda-Díaz, Elias Björnson, Rebecka Jörnsten, Jens Nielsen +1 more

Addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.06.188003
N/A
0DataRank · unranked
2 citations

Jonathan L. Robinson, Jens Nielsen, Lior Pachter, Johan Gustafsson

Sources of Variation in Cell-Type RNA-Seq Profiles

Research Square(2020)10.21203/rs.2.23415/v1
N/A
0DataRank · unranked
2 citations

Felix Held, Jonathan L. Robinson, Elias Björnson, Rebecka Jörnsten, Jens Nielsen +1 more