Rachel Patton McCord

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “Radiation-induced DNA damage and repair effects on 3D genome organization”.

Radiation-induced DNA damage and repair effects on 3D genome organization

Nature Communications(2020)10.1038/s41467-020-20047-w

N/A

0DataRank · unranked

127 citations

Trevor F. Freeman, Yang Xu, Rosela Golloshi, Mary A. Stallard, Ashtyn M Hill +4 more

Inferring chromosome radial organization from Hi-C data

BMC Bioinformatics(2020)10.1186/s12859-020-03841-7

N/A

0DataRank · unranked

13 citations

Tongye Shen, Rachel Patton McCord, Priyojit Das

SMILE: mutual information learning for integration of single-cell omics data

Bioinformatics(2021)10.1093/bioinformatics/btab706

N/A

0DataRank · unranked

74 citations

Priyojit Das, Rachel Patton McCord, Yang Xu

Chromosome compartmentalization alterations in prostate cancer cell lines model disease progression

The Journal of Cell Biology(2021)10.1083/jcb.202104108

N/A

0DataRank · unranked

42 citations

Priyojit Das, Renata Dos Reis Marques, Yang Xu, Justin M. Roberts, Jacob T. Sanders +3 more

CoSTA: unsupervised convolutional neural network learning for spatial transcriptomics analysis

BMC Bioinformatics(2021)10.1186/s12859-021-04314-1

N/A

0DataRank · unranked

33 citations

Rachel Patton McCord, Yang Xu

sciCAN: Single-cell chromatin accessibility and gene expression data integration via Cycle-consistent Adversarial Network

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.30.470677

N/A

0DataRank · unranked

3 citations

Edmon Begoli, Rachel Patton McCord, Yang Xu

Alterations in chromosome spatial compartmentalization classify prostate cancer progression

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.15.440056

N/A

0DataRank · unranked

2 citations

Priyojit Das, Renata Dos Reis Marques, Yang Xu, Rachel Patton McCord, Rebeca San Martin

Loops, TADs, Compartments, and Territories are Elastic and Robust to Dramatic Nuclear Volume Swelling

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.20.457153

N/A

0DataRank · unranked

2 citations

Rosela Golloshi, Peyton H. Terry, Darrian G. Nash, Yang Xu, Job Dekker +2 more

Characterizing the variation in chromosome structure ensembles in the context of the nuclear microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.16.473000

N/A

0DataRank · unranked

0 citations

Tongye Shen, Rachel Patton McCord, Priyojit Das

Diagonal integration of multimodal single-cell data: potential pitfalls and paths forward

Nature Communications(2022)10.1038/s41467-022-31104-x

N/A

0DataRank · unranked

38 citations

Rachel Patton McCord, Yang Xu

Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling

Scientific Reports(2022)10.1038/s41598-022-08602-5

N/A

0DataRank · unranked

34 citations

Rosela Golloshi, Priyojit Das, Yang Xu, Peyton H. Terry, Darrian G. Nash +3 more

sciCAN: single-cell chromatin accessibility and gene expression data integration via cycle-consistent adversarial network

npj Systems Biology and Applications(2022)10.1038/s41540-022-00245-6

N/A

0DataRank · unranked

27 citations

Edmon Begoli, Rachel Patton McCord, Yang Xu

Characterizing the variation in chromosome structure ensembles in the context of the nuclear microenvironment

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010392

N/A

0DataRank · unranked

6 citations

Tongye Shen, Rachel Patton McCord, Priyojit Das

SnapShot: Chromosome organization

Molecular Cell(2022)10.1016/j.molcel.2022.05.020

N/A

0DataRank · unranked

3 citations

Yang Xu, Heng Li, Priyojit Das, Rebeca San Martin, Rachel Patton McCord

Fast model-free standardization and integration of single-cell transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.28.486110

N/A

0DataRank · unranked

0 citations

Rafael Kramann, Rachel Patton McCord, Sikander Hayat, Yang Xu

Differential contributions of nuclear lamina association and genome compartmentalization to gene regulation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.12.507606

N/A

0DataRank · unranked

0 citations

Rebeca San Martin, Rachel Patton McCord, Priyojit Das

Differential contributions of nuclear lamina association and genome compartmentalization to gene regulation

Nucleus(2023)10.1080/19491034.2023.2197693

N/A

0DataRank · unranked

15 citations

Rebeca San Martin, Rachel Patton McCord, Priyojit Das

MASI enables fast model-free standardization and integration of single-cell transcriptomics data

Communications Biology(2023)10.1038/s42003-023-04820-3

N/A

0DataRank · unranked

4 citations

Rafael Kramann, Rachel Patton McCord, Sikander Hayat, Yang Xu

Amorphous calcium phosphate-coated surfaces as a model for bone microenvironment in prostate cancer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.20.533462

N/A

0DataRank · unranked

1 citations

Priyojit Das, Tianchun Xue, Morgan Rose Brown, Renata Dos Reis Marques, Michael E. Essington +3 more

Fast model-free standardization and integration of single-cell transcriptomics data

Research Square(2023)10.21203/rs.3.rs-2485985/v1

N/A

0DataRank · unranked

0 citations

Rafael Kramann, Rachel Patton McCord, Sikander Hayat, Yang Xu

Chromosome compartmentalization: causes, changes, consequences, and conundrums

Trends in Cell Biology(2024)10.1016/j.tcb.2024.01.009

N/A

0DataRank · unranked

35 citations

Christopher Playter, Priyojit Das, Rachel Patton McCord, Heng Li

Rearrangement of 3D genome organization in breast cancer epithelial to mesenchymal transition and metastasis organotropism

eLife(2024)10.7554/elife.103697

N/A

0DataRank · unranked

1 citations

Rebeca San Martin, Tian Hong, Rachel Patton McCord, Priyojit Das

Reviewer #1 (Public review): Rearrangement of 3D genome organization in breast cancer epithelial - mesenchymal transition and metastasis organotropism

(2024)10.7554/elife.103697.1.sa2

N/A

0DataRank · unranked

0 citations

Rebeca San Martin, Tian Hong, Rachel Patton McCord, Priyojit Das

Polymer model integrates imaging and sequencing to reveal how nanoscale heterochromatin domains influence gene expression

Nature Communications(2025)10.1038/s41467-025-59001-z

N/A

0DataRank · unranked

7 citations

Ramin Basir, Rosela Golloshi, Joshua Toth, Lucas E. Sant’Anna, Melike Lakadamyali +3 more

Deciphering pre-existing and induced 3D genome architecture changes involved in constricted melanoma migration

iScience(2025)10.1016/j.isci.2025.112346

N/A

0DataRank · unranked

3 citations

Rosela Golloshi, Joshua H. Garretson, Álvaro Rodríguez González, T. Olajide, A. Ben Saad +3 more

Amorphous calcium phosphate-coated surfaces as a model for bone microenvironment in prostate cancer

Heliyon(2025)10.1016/j.heliyon.2025.e41929

N/A

0DataRank · unranked

1 citations

Prijoyit Das, Tianchun Xue, Morgan Rose Brown, Renata Dos Reis Marques, Michael E. Essington +3 more

Transient histone deacetylase inhibition reveals cell type invariant and specific effects of chromatin decondensation on irradiation response

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.20.660786

N/A

0DataRank · unranked

0 citations

Campbell Maben, Debjani Pal, Sandra Davern, Rachel Patton McCord, Heng Li

The multiscale distribution of radiation-induced DNA damage and its impact on local genome structure

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.25.672161

N/A

0DataRank · unranked

0 citations

Tianchun Xue, Rachel Patton McCord, Heng Li