Peter C. Dedon

Also affiliated with Harvard–MIT Division of Health Sciences and Technology, IIT@MIT, CNR de la Résistance aux Antibiotiques, Singapore-MIT Alliance for Research and Technology, Massachusetts Institute of Technology

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 55 papers. Top paper: “Irp2 regulates insulin production through iron-mediated Cdkal1-catalyzed tRNA modification”.

Irp2 regulates insulin production through iron-mediated Cdkal1-catalyzed tRNA modification

Nature Communications(2020)10.1038/s41467-019-14004-5

N/A

2.3DataRank · unranked

89 citations

Cole Anderson, Susanne Neschen, Kimberly B. Zumbrennen‐Bullough, Steven Joshua Romney, Melanie Kahle‐Stephan +12 more

Detecting the epitranscriptome

Wiley Interdisciplinary Reviews - RNA(2021)10.1002/wrna.1663

N/A

1.3DataRank · unranked

43 citations

William Gasperi, Ulrike Begley, Steven Nevins, Sabrina M. Huber, Peter C. Dedon +2 more

Dysfunctional tRNA reprogramming and codon-biased translation in cancer

Trends in Molecular Medicine(2022)10.1016/j.molmed.2022.09.007

N/A

0.637DataRank · unranked

69 citations

Thomas J. Begley, Peter C. Dedon

Nanopore-based direct sequencing of RNA transcripts with 10 different modified nucleotides reveals gaps in existing technology

G3 Genes Genomes Genetics(2023)10.1093/g3journal/jkad200

N/A

0.520DataRank · unranked

12 citations

Annelise Comai, Alan Bruzel, Guangxin Sun, Peter C. Dedon, Vivian G. Cheung +1 more

β-amyloid accumulation enhances microtubule associated protein tau pathology in an APPNL-G-F/MAPTP301S mouse model of Alzheimer’s disease

Frontiers in Neuroscience(2024)10.3389/fnins.2024.1372297

N/A

0.434DataRank · unranked

17 citations

Rebecca Roberts, Melissa Wong, Lushuang Zhang, Chelsea Joy Webber, Jenna Libera +17 more

A systems-level mass spectrometry-based technique for accurate and sensitive quantification of the RNA cap epitranscriptome

Nature Protocols(2023)10.1038/s41596-023-00857-0

N/A

0.416DataRank · unranked

15 citations

Bing Liang Alvin Chew, Yong Lai, Hongping Dong, Luang Xu, Yu Liu +8 more

Dengue virus exploits the host tRNA epitranscriptome to promote viral replication

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.05.565734

N/A

0.373DataRank · unranked

11 citations

Newman Siu Kwan Sze, Yuka Suzuki, Takayuki Ohira, Tsutomu Suzuki, Thomas J. Begley +2 more

The Greatwall-Endosulfine-PP2A/B55 pathway regulates entry into quiescence by enhancing translation of Elongator-tunable transcripts

Nature Communications(2024)10.1038/s41467-024-55004-4

N/A

0.267DataRank · unranked

4 citations

M. Belén Suárez, Rafael López-San Segundo, Alicia Vázquez-Bolado, Jingjing Sun, Natalia García-Blanco +9 more

Phosphorothioate DNA modification by BREX Type 4 systems in the human gut microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.03.597175

N/A

0.241DataRank · unranked

4 citations

Michael S. DeMott, Shane R. Byrne, K. Flores, Mathilde Poyet, Mathieu Groussin +6 more

Accumulation of m6A exhibits stronger correlation with MAPT than β-amyloid pathology in an APPNL-G-F /MAPTP301S mouse model of Alzheimer's disease

Research Square(2023)10.21203/rs.3.rs-2745852/v1

N/A

0.165DataRank · unranked

2 citations

Rebecca Roberts, Melissa Wong, Lushuang Zhang, Chelsea Joy Webber, Alper Kilci +13 more

Temporal dynamics and metagenomics of phosphorothioate epigenomes in the human gut microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.29.596306

N/A

0.165DataRank · unranked

2 citations

Michael S. DeMott, Yifeng Yuan, Farzan Ghanegolmohammadi, Stefanie Kaiser, James G. Fox +3 more

Alternate routes to mnm 5 s 2 U synthesis in Gram-positive bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.21.572861

N/A

0.165DataRank · unranked

2 citations

Guangxin Sun, Ho‐Ching Tiffany Tsui, Colbie Reed, Jinjing Sun, Marko Jörg +7 more

Dosimetry of N 6 -Formyllysine Adducts Following [ 13 C 2 H 2 ]-Formaldehyde Exposures in Rats

Figshare(2020)10.17615/qafy-vx20

N/A

0.104DataRank · unranked

1 citations

Melanie Doyle‐Eisele, Peter C. Dedon, Benjamin C. Moeller, Koli Taghizadeh, Bahar Edrissi +2 more

Synonymous codon usage defines functional gene families

BMC Biology(2026)10.1186/s12915-026-02505-x

N/A

0.104DataRank · unranked

1 citations

Shinsuke Ohnuki, Shane Byrne, Rahul Raman, Thomas J. Begley, Peter C. Dedon +1 more

DNA Modifications Enabling Proximity Biotinylation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.02.510503

N/A

0DataRank · unranked

2 citations

Keenan Pearson, Shane R. Byrne, Laura B. Bickart, Peter C. Dedon, L. James Maher +1 more

Tissue- and sex-specific DNA damage tracks aging in rodents and humans

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.28.518087

N/A

0DataRank · unranked

0 citations

Farzan Ghanegolmohammadi, Yijun Wang, Jiapeng Leng, Alexander Kreymerman, Jacqueline Gamboa Varela +16 more

Molecular Coping Mechanisms: Reprogramming tRNAs To Regulate Codon-Biased Translation of Stress Response Proteins

Accounts of Chemical Research(2023)10.1021/acs.accounts.3c00572

N/A

0DataRank · unranked

29 citations

Thomas J. Begley, Peter C. Dedon, Michelle M. Mitchener

Four additional natural 7-deazaguanine derivatives in phages and how to make them

Nucleic Acids Research(2023)10.1093/nar/gkad657

N/A

0DataRank · unranked

13 citations

Seetharamsing Balamkundu, Chuan‐Fa Liu, Hong Ye, Jacob Hourihan, Astrid Rausch +18 more

7-Deazaguanines in DNA: functional and structural elucidation of a DNA modification system

Nucleic Acids Research(2023)10.1093/nar/gkad141

N/A

0DataRank · unranked

11 citations

Evan Wood, Andrew Gustafson, Cui Liang, Shr-Hau Hung, Joshua Savage +7 more

Discovery adductomics provides a comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans

Nucleic Acids Research(2023)10.1093/nar/gkad822

N/A

0DataRank · unranked

8 citations

Farzan Ghanegolmohammadi, Yijun Wang, Jiapeng Leng, Alexander Kreymerman, Jacqueline Gamboa Varela +16 more

DNA Modifications Enabling Proximity Biotinylation

Bioconjugate Chemistry(2023)10.1021/acs.bioconjchem.2c00475

N/A

0DataRank · unranked

2 citations

Keenan Pearson, Shane R. Byrne, Laura B. Bickart, Peter C. Dedon, L. James Maher +1 more

Queuosine Salvage in Bartonella henselae Houston 1: A Unique Evolutionary Path

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.05.570228

N/A

0DataRank · unranked

3 citations

Yifeng Yuan, Guangxin Sun, Ranjala Ratnayake, Geoffrey Hutinet, Peter C. Dedon +3 more

Accumulation of m 6 A exhibits stronger correlation with MAPT than β-amyloid pathology in an APP NL-G-F /MAPT P301S mouse model of Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.28.534515

N/A

0DataRank · unranked

2 citations

Rebecca Roberts, Melissa Wong, Lushuang Zhang, Chelsea Joy Webber, Alper Kilci +13 more

Facile metabolic reprogramming distinguishes mycobacterial adaptation to hypoxia and starvation: The role of ketosis in starvation-induced persistence

Research Square(2023)10.21203/rs.3.rs-3193999/v1

N/A

0DataRank · unranked

0 citations

Nick Davis, Yok Hian Chionh, Megan E. McBee, Fabian Hia, Duanduan Ma +7 more

The Greatwall-Endosulfine-PP2A/B55 pathway controls entry into quiescence by promoting translation of Elongator-tuneable transcripts

Research Square(2023)10.21203/rs.3.rs-3616701/v1

N/A

0DataRank · unranked

0 citations

Javier Encinar del Dedo, Rafael López-San Segundo, Alicia Vázquez-Bolado, Jingjing Sun, Natalia García-Blanco +9 more

Antibody production relies on the tRNA inosine wobble modification to meet biased codon demand

Science(2024)10.1126/science.adi1763

N/A

0DataRank · unranked

30 citations

Xuesong Wang, Sabrina M. Huber, Liling Xu, John E. Warner, Stephanie R. Weldon +10 more

tRNA modification reprogramming contributes to artemisinin resistance in Plasmodium falciparum

Nature Microbiology(2024)10.1038/s41564-024-01664-3

N/A

0DataRank · unranked

30 citations

Ameya Sinha, Talia S. Bloxham, Laura M. Hagenah, Guangxin Sun, Peter R. Preiser +3 more

Mapping the tRNA modification landscape of Bartonella henselae Houston I and Bartonella quintana Toulouse

Frontiers in Microbiology(2024)10.3389/fmicb.2024.1369018

N/A

0DataRank · unranked

10 citations

Jingjing Sun, Virginie Marchand, Guangxin Sun, Colbie Reed, Yuri Motorin +4 more

Alternate routes to mnm 5 s 2 U synthesis in Gram-positive bacteria

Journal of Bacteriology(2024)10.1128/jb.00452-23

N/A

0DataRank · unranked

9 citations

Guangxin Sun, Ho‐Ching Tiffany Tsui, Colbie Reed, Jingjing Sun, Marko Jörg +8 more

Facile metabolic reprogramming distinguishes mycobacterial adaptation to hypoxia and starvation: ketosis drives starvation-induced persistence in M. bovis BCG

Communications Biology(2024)10.1038/s42003-024-06562-2

N/A

0DataRank · unranked

7 citations

Yok Hian Chionh, Megan E. McBee, Fabian Hia, Duanduan Ma, Cui Liang +7 more

Queuosine salvage in Bartonella henselae Houston 1: a unique evolutionary path

Microbiology(2024)10.1099/mic.0.001490

N/A

0DataRank · unranked

5 citations

Yifeng Yuan, Guangxin Sun, Ranjala Ratnayake, Geoffrey Hutinet, Peter C. Dedon +3 more

Environmental Control of Queuosine Levels in Streptococcus mutanstRNAs

Molecular Microbiology(2024)10.1111/mmi.15336

N/A

0DataRank · unranked

3 citations

Kathryn E. Savage, Paul J. Kuipers, Jo Marie Bacusmo, Jennifer Hu, Jingjing Sun +4 more

Mechanism of Catalysis and Substrate Binding of Epoxyqueuosine Reductase in the Biosynthetic Pathway to Queuosine-Modified tRNA

Biochemistry(2024)10.1021/acs.biochem.4c00524

N/A

0DataRank · unranked

1 citations

Marshall Jaroch, Guangxin Sun, Peter C. Dedon, Valérie de Crécy‐Lagard, Steven D. Bruner +1 more

tRNA modification profiling reveals epitranscriptome regulatory networks in Pseudomonas aeruginosa

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.01.601603

N/A

0DataRank · unranked

4 citations

Junzhou Wu, Yifeng Yuan, Leon Fan, Wei Lin Patrina Chua, Yan Han Sharon Ling +7 more

Synergistic effects of tRNA modification defects in Escherichia coli K12

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.12.622971

N/A

0DataRank · unranked

1 citations

Jill Babor, Jennifer Hu, Bo Cao, Stefanie Kellner, Sierra Szkrybalo +8 more

Mapping the tRNA Modification Landscape of Bartonella henselae Houston I and Bartonella quintana Toulouse

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.08.574729

N/A

0DataRank · unranked

0 citations

Jingjing Sun, Virginie Marchand, Guangxin Sun, Colbie Reed, Yuri Motorin +4 more

Correction to “Molecular Coping Mechanisms: Reprogramming tRNAs to Regulate Codon-Biased Translation of Stress Response Proteins”

Accounts of Chemical Research(2024)10.1021/acs.accounts.4c00466

N/A

0DataRank · unranked

0 citations

Thomas J. Begley, Peter C. Dedon, Michelle M. Mitchener

tRNA modification profiling reveals epitranscriptome regulatory networks in Pseudomonas aeruginosa

Nucleic Acids Research(2025)10.1093/nar/gkaf696

N/A

0DataRank · unranked

7 citations

Junzhou Wu, Yifeng Yuan, Leon Fan, Wei Lin Patrina Chua, Yan Han Sharon Ling +8 more

Unlocking the regulatory code of RNA: launching the Human RNome Project

Genome biology(2025)10.1186/s13059-025-03824-y

N/A

0DataRank · unranked

7 citations

Etienne Boileau, Janusz M. Bujnicki, Vivian G. Cheung, Silvestro G. Conticello, Peter C. Dedon +14 more

5-Methyluridine is Ubiquitous in Pseudomonas aeruginosa tRNA and Modulates Antimicrobial Resistance and Virulence

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169020

N/A

0DataRank · unranked

6 citations

Ruixi Chen, Junzhou Wu, Michael S. DeMott, Jingjing Sun, Kamonwan Phatinuwat +7 more

Genes and Pathways Comprising the Human and Mouse ORFeomes Display Distinct Codon Bias Signatures that Can Regulate Protein Levels

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.03.636209

N/A

0DataRank · unranked

3 citations

Rahul Raman, Shane R. Byrne, Farzan Ghanegolmohammadi, Chetna Mathur, Ulrike Begley +3 more

PT-seq: A method for metagenomic analysis of phosphorothioate epigenetics in complex microbial communities

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.03.597111

N/A

0DataRank · unranked

0 citations

Michael S. DeMott, Shane R. Byrne, the Global Microbiome Conservancy, Peter C. Dedon, Yifeng Yuan

The epitranscriptomic writer ALKBH8 drives tolerance and protects mouse lungs from the environmental pollutant naphthalene

Epigenetics(2020)10.1080/15592294.2020.1750213

N/A

0DataRank · unranked

24 citations

Nataliia Kovalchuk, Lei Yin, Lauren Endres, Sara Evke, Steven Nevins +8 more

Protein Domain Guided Screen for Sequence Specific and Phosphorothioate-Dependent Restriction Endonucleases

Frontiers in Microbiology(2020)10.3389/fmicb.2020.01960

N/A

0DataRank · unranked

10 citations

H. Czapinska, Alexey Fomenkov, В. А. Потапов, Daniel F. Heiter, Bo Cao +4 more

Phenoxy Radical Reactivity of Nucleic Acids: Practical Implications for Biotinylation

ChemBioChem(2020)10.1002/cbic.202000854

N/A

0DataRank · unranked

5 citations

Brian A. Garcia, Shane R. Byrne, Peter C. Dedon, L. James Maher, Brandon Wilbanks

Illuminating Host-Mycobacterial Interactions with Genome-wide CRISPR Knockout and CRISPRi Screens

Cell Systems(2020)10.1016/j.cels.2020.08.010

N/A

0DataRank · unranked

46 citations

Gregory H. Babunovic, Liang Cui, Peter C. Dedon, John G. Doench, Sarah M. Fortune +2 more

Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2002933117

N/A

0DataRank · unranked

34 citations

Bo Cao, Patricia Aquino, Tsu-Pei Chiu, Chao Chen, Susu Jiang +7 more

tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast

RNA Biology(2020)10.1080/15476286.2020.1819671

N/A

0DataRank · unranked

30 citations

Nick Davis, Ana Poim, Andreia Reis, Stefanie Kellner, Inês Sousa +5 more

Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast

Biomolecules(2020)10.3390/biom10020322

N/A

0DataRank · unranked

27 citations

Roland Klassen, Nick Davis, Akif Ciftci, Jo Marie Bacusmo, Maria Martinelli +6 more

Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast

Preprints.org(2020)10.20944/preprints202001.0188.v1

N/A

0DataRank · unranked

5 citations

Roland Klassen, Nick Davis, Akif Ciftci, Jo Marie Bacusmo, Maria Marinelli +6 more

Illuminating host-mycobacterial interactions with functional genomic screening to inhibit mycobacterial pathogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.30.016139

N/A

0DataRank · unranked

0 citations

Gregory H. Babunovic, Liang Cui, Peter C. Dedon, John G. Doench, Sarah M. Fortune +2 more

Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for meiotic chromosome segregation

Molecular Cell(2021)10.1016/j.molcel.2021.11.003

N/A

0DataRank · unranked

62 citations

Carlo Yague‐Sanz, Lara K. Krüger, Phong T. Tran, Valérie Migeot, Max Louski +11 more

Depletion of METTL3 alters cellular and extracellular levels of miRNAs containing m6A consensus sequences

Heliyon(2021)10.1016/j.heliyon.2021.e08519

N/A

0DataRank · unranked

17 citations

Jeffrey L. Franklin, Margaret A. Clement, Scott A. Hinger, Ryan M. Allen, Xiao Liu +10 more

Arsenite toxicity is regulated by queuine availability and oxidation-induced reprogramming of the human tRNA epitranscriptome

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2123529119

N/A

0DataRank · unranked

54 citations

Ulrike Begley, Anwesha Sarkar, William Gasperi, Evan T. Davis, Vasudha Surampudi +5 more

Nanopore Sequencing for Detection and Characterization of Phosphorothioate Modifications in Native DNA Sequences

Frontiers in Microbiology(2022)10.3389/fmicb.2022.871937

N/A

0DataRank · unranked

5 citations

Sun Hee Moon, Michael S. DeMott, Visanu Wanchai, En Huang, Peter C. Dedon +3 more